Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000838.1

Orthogroup ID

OG0003343

Physical Location & Seq

Genomic Coordinates Reverse (-)

19954 .. 31731

Gene Structure 11778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000838.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3747 bp

atggctcgaatgatgatcactcgaaaaacagtatcagcagtagcacttatgggatggacagtgttcattagcctcctaatgataagtgaagttgtgaatgcagaaaggcccctaaaagatgagcagaagccaagaaattttgttgaagaagatgtaaagcaaggagtctttgtgagaatgatgaagcttctctggcagactggagggtcttcttatcaacctgtttggcctgagatgaagtttggttggaaaattgtagtgggaacaatagttgggttctttggtgctgcattgggtagtgttggaggtgttggtggtggaggaatttttgttccgatgctcgcgttgatcgttggtttcgatcccaagtcttccaccgccatttccaagtgtatgataatgggagctgcaggctcaacagtgtacttcaatttgagacttaggcacccaacactggacatgccccttatagattatgatctggctttgctctttcagccaatgcttatgctaggaatcagcattggagttgccttcaacgtcatgtttgccgattggatggtcacagttctactcatcattcttttcctagggacagcagcaaaagctttaatgaaaggcatacaaacatggaagaaagaaacaatgatgaagaaggaagccgaaaagcagttggaatcggagtccaaacccggtgatggttctggagaagactacaaaccattacctagcggtccagtttcattgcaagatgacgaagtacctatctcgcgcaacgtttactggaaagagttgttattgcttgtgtttgtgtgggtggctttccttattgttcagattgtcaagacatataccgagacttgctccaccatgttctgggtcctgaattccttgcaggtaccaattgctgcctcagtaacagtttttgaagcgatatgcttgtggaaaggcaccagggtaattgcatcaaaaggaaaggaaatcacaaactggaagttgcatcagctatttctttactgctgctgtgggattgtagctggtatggttggtggactacttggcctcggaggcggtttcatcttgggacccctatttcttgaacttggaattcctcctcaggtagcaagtgctacatcaacctttgctatgctattctcatcctccatgtcagttgtacaatattaccttctcaaccgtttcccagttccatatgctgcttattttgttttggttgctacaattgctgcctttactggtcaacatgtcgtgagaaagatcattgcagtgctcggaagagcctccattgtcatcttcatactagcgatgacgattttcgtcagtgcaatcagcttagggggggtcggaatagcaaacatggttgagaagatggagaatcaagagtacatgggtggccagtggtggccgggggcctttgtgcctgttggtgggtcccgcattggagagaattgcaactttgttgggataccctccgtggaccctctcctacgcctagtggccagtggtggccgggggcctttgtgcctgttggtttttgaaatggcgacgaaggccgagccgtcggcggagtctccgacttcggttctcaaggaagaggatgtatgtggggagattgatgtcaaattagaggagattgatgtcaaattagagaaggaggaggagaagctcctcgaagctcgggttaaggaagaggaggcagaaacagaaaaggagcccccccacttgaatgacactcagtttagcaagttggatgagcttctaacaaagactcagctttactccgattttttgctcgagaaaatggatgacatcacgcttgatgttcccgagcagccgtgtgaacctgttgagaaaaagagaggtcgtggtttcaaaagaaaggctacttacaataatacaaaggccaagagggcagttgcagctatgcttacaaggtctaaagagggtgagaaaattgaagatgtgaacctaaccgaggaagaaagagttgagaaacagcaacaggaacttgtacctctactgactggtggaaaattgaagtcttatcaactcaaaggtgtaaagtggttgatctctttatggcaaaatgggttgaatgggatccttgcagaccaaatgggacttggaaagactatccaaaccataggttttctttctcatcttaaatctatgggactggatgggccatacttggtgattgcacctctttctaccctttccaactggattaatgaaatttcaaggtttacgccttcaatgaaggctataatctatcatggtaacaagaaagaaagggatgacatacgaaggaagcacatgcccaaatcagttggccctaacttcccaataattgttacctcatatgaagttgcgttggctgatgcaagaaaatgtttaaggcactacaactggaaatatcttgtggttgatgaaggacacagattgaaaaactccaagtgcaaattagtgcagcagttgaagtacatacctgtagagaataagattctgttgactggaacacctctgcagaataatttggctgagctttggtcattgttgaactttattttgccggatatattctcatcccatgaagaatttgagtcatggtttgacctaggaggaaagtgcaatagtgaagcaatgaaggaagaattggaagagaagagaagggctcaagtgctaccgaaactccatgccatactgcgtccctttcttctccgaagaatgaagatagatgttgagctgatgcttcctaggaaaaaggaaatcatattatatgcaaccatgacagagcatcaaaagaagtttcaggaacatctgatcaataagacactggagaaacatctaatgcttgaaaatggaagccatgtaaatggcctgaaagggaagcttaacaatttgatgatccaacttcggaagaactgcaatcatcctgaccttttagagtcggcatttgatggatcatatttctacccccctgttgaccagatagttgagcaatgtgggaaatttagcttgcttgaacgactgttgaagcggctgcttgcctgcaaacacaaggttctgatattctcacagtggactaagattttggatataatggattactattttagcgaaaaaggatttgaagtttgtagaatcgatggcaatgtgaaactagatgagcggagaagacagattgcttctttcaatgatttagacagcacttgtagaatattccttctgagcactagagctggtggactgggtatcaaccttactgcagctgatacttgtatactgtatgacagtgattggaaccctcaaatggatttgcaagccatggatagatgtcacaggattgggcaaaccaagccggttcatgtttaccggttggcaacagcacaatctgtggagggtcggatgttgaaaagagcttttagtaagttgaagcttgaacatgtagtcattggaaaaggaaagttccatcaggaaagagccaagcctgaggcagaattcttggaggaagaggatctcatagcagttctccgagaagaagaatctgctgaggacaagatgatacagacagaaatcagtgacgaagaactggagaaggtcttggatcgcagtgatctcgtggggactcctactgatgctgctgctgcacttcccctaaaggggcctggctgggaagtggtggttcctaccgctggtgggggcatgctctccacccttaatagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000786 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006342 GO:0006344 GO:0006346 GO:0006349 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0010639 GO:0016043 GO:0016458 GO:0016462 GO:0016569 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031056 GO:0031057 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031401 GO:0032196 GO:0032197 GO:0032268 GO:0032269 GO:0032270 GO:0032392 GO:0032508 GO:0032991 GO:0032993 GO:0033043 GO:0033044 GO:0034641 GO:0035065 GO:0035067 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044030 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044764 GO:0044815 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0060255 GO:0065007 GO:0070035 GO:0071103 GO:0071514 GO:0071704 GO:0071840 GO:0080090 GO:0090239 GO:0090241 GO:0090304 GO:0140097 GO:1901360 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1905269 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2001141 GO:2001251 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

1248

Amino Acids

139.88

Weight (kDa)

7.06

Isoelectric Point (pI)

36.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66750
fragaria_vesca	FvH4_1g13430 FvH4_1g13430 FvH4_1g13430 FvH4_1g13440 FvH4_1g13440
malus_domestica	MD02G1149400.v1.1 MD02G1149600.v1.1 MD15G1264100.v1.1 MD15G1264200.v1.1
prunus_persica	Prupe.3G299700_v2.0.a1 Prupe.7G153300_v2.0.a1 Prupe.7G153400_v2.0.a1 Prupe.7G153400_v2.0.a1
pyrus_communis	pycom02g11750 pycom02g11770 pycom15g22990
rosa_chinensis	RchiOBHm_Chr2g0101811 RchiOBHm_Chr2g0101821
rosa_laevigata	RLG00000017102 RLG00000017103
rosa_multiflora	Rmu_co8045018.1_g000001 Rmu_sc0000838.1_g000003
rosa_roxburghii	Rroxscaffold_2G00141020
rosa_rugosa	Rorug02G0102000 Rorug07G0333200
rosa_samantha	Rh2AG149400 Rh2AG149500 Rh2BG155000 Rh2BG155100 Rh2CG155400 Rh2CG155500 Rh2DG155200 Rh2DG155300
rosa_wichuraiana	Rw2G011690 Rw2G011700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	205
Acc36I	ACCTGC	1 cut(s)	886
Acc65I	GGTACC	1 cut(s)	898
AccB1I	GGYRCC	3 cut(s)	444, 898, 950
AccB7I	CCANNNNNTGG	1 cut(s)	876
AccBSI	CCGCTC	1 cut(s)	3190
AccI	GTMKAC	1 cut(s)	3301
AccII	CGCG	2 cut(s)	344, 772
AciI	CCGC	8 cut(s)	378, 732, 1071, 1453, 1583, 3058, 3190, 3711
AclI	AACGTT	1 cut(s)	777
AclWI	GGATC	7 cut(s)	356, 2113, 2126, 2920, 2989, 3543, 3633
AcoI	YGGCCR	4 cut(s)	1411, 1421, 1515, 1525
AcsI	RAATTY	8 cut(s)	136, 324, 886, 1107, 2253, 2615, 3029, 3518
AfaI	GTAC	7 cut(s)	425, 762, 900, 1176, 1403, 2031, 2501
AflIII	ACRYGT	2 cut(s)	1261, 3463
AgeI	ACCGGT	1 cut(s)	3393
AjnI	CCWGG	2 cut(s)	953, 3685
AjuI	GAANNNNNNNTTGG	2 cut(s)	2657, 2689
AloI	GAACNNNNNNTCC	2 cut(s)	315, 347
Alw21I	GWGCWC	2 cut(s)	1290, 3254
Alw26I	GTCTC	3 cut(s)	430, 851, 1593
AlwI	GGATC	7 cut(s)	356, 2113, 2126, 2920, 2989, 3543, 3633
Ama87I	CYCGRG	3 cut(s)	1695, 1811, 1844
ApoI	RAATTY	8 cut(s)	136, 324, 886, 1107, 2253, 2615, 3029, 3518
ArsI	GACNNNNNNTTYG	2 cut(s)	3094, 3126
AseI	ATTAAT	1 cut(s)	2247
AsiGI	ACCGGT	1 cut(s)	3393
Asp718I	GGTACC	1 cut(s)	898
AspA2I	CCTAGG	3 cut(s)	589, 2635, 2774
AspLEI	GCGC	1 cut(s)	774
AsuC2I	CCSGG	3 cut(s)	693, 1425, 1529
AsuHPI	GGTGA	3 cut(s)	707, 1976, 2224
AvaI	CYCGRG	3 cut(s)	1695, 1811, 1844
AvaII	GGWCC	5 cut(s)	734, 880, 1085, 1449, 1495
AvrII	CCTAGG	3 cut(s)	589, 2635, 2774
AxyI	CCTNAGG	2 cut(s)	1116, 3510
BalI	TGGCCA	2 cut(s)	1413, 1517
BamHI	GGATCC	1 cut(s)	2118
BanI	GGYRCC	3 cut(s)	444, 898, 950
BanII	GRGCYC	2 cut(s)	1734, 2695
BauI	CACGAG	1 cut(s)	3638
BbsI	GAAGAC	4 cut(s)	201, 363, 717, 3202
Bbv12I	GWGCWC	2 cut(s)	1290, 3254
BbvCI	CCTCAGC	1 cut(s)	3570
BccI	CCATC	8 cut(s)	48, 553, 692, 1381, 2192, 2972, 3161, 3498
BceAI	ACGGC	2 cut(s)	1561, 1837
BcgI	CGANNNNNNTGC	2 cut(s)	3619, 3653
BciT130I	CCWGG	2 cut(s)	955, 3687
BciVI	GTATCC	1 cut(s)	1476
BclI	TGATCA	2 cut(s)	15, 2841
BcnI	CCSGG	3 cut(s)	693, 1425, 1529
BcoDI	GTCTC	3 cut(s)	430, 851, 1593
BfaI	CTAG	9 cut(s)	512, 590, 729, 1319, 1511, 2636, 2775, 3182, 3255
BfmI	CTRYAG	4 cut(s)	408, 2508, 2543, 3285
BfuAI	ACCTGC	1 cut(s)	886
BfuI	GTATCC	1 cut(s)	1476
BglI	GCCNNNNNGGC	2 cut(s)	1068, 1928
BlnI	CCTAGG	3 cut(s)	589, 2635, 2774
BlpI	GCTNAGC	1 cut(s)	2559
Bme1390I	CCNGG	5 cut(s)	693, 955, 1425, 1529, 3687
Bme18I	GGWCC	5 cut(s)	734, 880, 1085, 1449, 1495
BmeT110I	CYCGRG	3 cut(s)	1695, 1811, 1844
BmrFI	CCNGG	5 cut(s)	693, 955, 1425, 1529, 3687
BmrI	ACTGGG	2 cut(s)	1196, 3278
BmsI	GCATC	7 cut(s)	327, 974, 1009, 2389, 2757, 2824, 3646
BmuI	ACTGGG	2 cut(s)	1196, 3278
BpiI	GAAGAC	4 cut(s)	201, 363, 717, 3202
BplI	GAGNNNNNCTC	4 cut(s)	848, 880, 2677, 2709
BpmI	CTGGAG	4 cut(s)	222, 726, 2876, 3632
Bpu10I	CCTNAGC	2 cut(s)	1351, 3570
Bpu1102I	GCTNAGC	1 cut(s)	2559
BpuEI	CTTGAG	2 cut(s)	1589, 2679
BpuMI	CCSGG	3 cut(s)	693, 1425, 1529
Bsa29I	ATCGAT	1 cut(s)	3165
BsaBI	GATNNNNATC	1 cut(s)	477
BsaWI	WCCGGW	1 cut(s)	3393
BsaXI	ACNNNNNCTCC	4 cut(s)	156, 186, 2694, 2724
Bse118I	RCCGGY	2 cut(s)	3379, 3393
Bse21I	CCTNAGG	2 cut(s)	1116, 3510
Bse3DI	GCAATG	5 cut(s)	743, 1278, 2667, 3026, 3178
Bse8I	GATNNNNATC	1 cut(s)	477
BseBI	CCWGG	2 cut(s)	955, 3687
BseCI	ATCGAT	1 cut(s)	3165
BseJI	GATNNNNATC	1 cut(s)	477
BseMI	GCAATG	5 cut(s)	743, 1278, 2667, 3026, 3178
BseMII	CTCAG	9 cut(s)	222, 927, 1130, 1766, 1802, 2550, 3239, 3501, 3561
BseRI	GAGGAG	6 cut(s)	1104, 1661, 1676, 1688, 1691, 1724
BseYI	CCCAGC	1 cut(s)	3690
BsgI	GTGCAG	2 cut(s)	2507, 3651
Bsh1236I	CGCG	2 cut(s)	344, 772
BshNI	GGYRCC	3 cut(s)	444, 898, 950
BshTI	ACCGGT	1 cut(s)	3393
BshVI	ATCGAT	1 cut(s)	3165
BsiHKAI	GWGCWC	2 cut(s)	1290, 3254
BsiHKCI	CYCGRG	3 cut(s)	1695, 1811, 1844
BsiSI	CCGG	6 cut(s)	693, 1424, 1528, 2591, 3380, 3394
BslFI	GGGAC	7 cut(s)	607, 1098, 1435, 2151, 2205, 2712, 3658
BsmAI	GTCTC	3 cut(s)	430, 851, 1593
BsmFI	GGGAC	7 cut(s)	607, 1098, 1435, 2151, 2205, 2712, 3658
BsmI	GAATGC	1 cut(s)	103
BsoBI	CYCGRG	3 cut(s)	1695, 1811, 1844
Bsp1286I	GDGCHC	4 cut(s)	1290, 1734, 2695, 3254
Bsp1407I	TGTACA	1 cut(s)	1174
Bsp1720I	GCTNAGC	1 cut(s)	2559
Bsp19I	CCATGG	1 cut(s)	3345
BspACI	CCGC	8 cut(s)	378, 732, 1071, 1453, 1583, 3058, 3190, 3711
BspCNI	CTCAG	9 cut(s)	223, 926, 1129, 1765, 1801, 2551, 3240, 3502, 3562
BspDI	ATCGAT	1 cut(s)	3165
BspFNI	CGCG	2 cut(s)	344, 772
BspMAI	CTGCAG	3 cut(s)	412, 2547, 3289
BspMI	ACCTGC	1 cut(s)	886
BspPI	GGATC	7 cut(s)	356, 2113, 2126, 2920, 2989, 3543, 3633
BspQI	GCTCTTC	1 cut(s)	1288
BspT107I	GGYRCC	3 cut(s)	444, 898, 950
BsrBI	CCGCTC	1 cut(s)	3190
BsrDI	GCAATG	5 cut(s)	743, 1278, 2667, 3026, 3178
BsrFI	RCCGGY	2 cut(s)	3379, 3393
BsrGI	TGTACA	1 cut(s)	1174
BssAI	RCCGGY	2 cut(s)	3379, 3393
BssNAI	GTATAC	1 cut(s)	3302
BssSI	CACGAG	1 cut(s)	3638
BssT1I	CCWWGG	4 cut(s)	589, 2635, 2774, 3345
Bst1107I	GTATAC	1 cut(s)	3302
Bst2BI	CACGAG	1 cut(s)	3638
Bst2UI	CCWGG	2 cut(s)	955, 3687
Bst6I	CTCTTC	6 cut(s)	1288, 1605, 1701, 2673, 2678, 3525
BstAUI	TGTACA	1 cut(s)	1174
BstC8I	GCNNGC	7 cut(s)	342, 412, 3038, 3066, 3070, 3342, 3725
BstDSI	CCRYGG	2 cut(s)	1491, 3345
BstENI	CCTNNNNNAGG	1 cut(s)	1991
BstFNI	CGCG	2 cut(s)	344, 772
BstHHI	GCGC	1 cut(s)	774
BstMAI	GTCTC	3 cut(s)	430, 851, 1593
BstNI	CCWGG	2 cut(s)	955, 3687
BstNSI	RCATGY	5 cut(s)	463, 1265, 2338, 3467, 3727
BstSCI	CCNGG	5 cut(s)	691, 953, 1423, 1527, 3685
BstSFI	CTRYAG	4 cut(s)	408, 2508, 2543, 3285
BstUI	CGCG	2 cut(s)	344, 772
BstV2I	GAAGAC	4 cut(s)	201, 363, 717, 3202
BstX2I	RGATCY	2 cut(s)	2118, 3535
BstXI	CCANNNNNNTGG	1 cut(s)	2894
BstYI	RGATCY	2 cut(s)	2118, 3535
BstZ17I	GTATAC	1 cut(s)	3302
Bsu15I	ATCGAT	1 cut(s)	3165
Bsu36I	CCTNAGG	2 cut(s)	1116, 3510
BsuI	GTATCC	1 cut(s)	1476
BsuTUI	ATCGAT	1 cut(s)	3165
BtgI	CCRYGG	2 cut(s)	1491, 3345
BtgZI	GCGATG	1 cut(s)	1337
BtsI	GCAGTG	2 cut(s)	1290, 3637
BveI	ACCTGC	1 cut(s)	886
Cac8I	GCNNGC	7 cut(s)	342, 412, 3038, 3066, 3070, 3342, 3725
CfoI	GCGC	1 cut(s)	774
Cfr10I	RCCGGY	2 cut(s)	3379, 3393
ClaI	ATCGAT	1 cut(s)	3165
CseI	GACGC	1 cut(s)	2714
Csp6I	GTAC	7 cut(s)	424, 761, 899, 1175, 1402, 2030, 2500
CspAI	ACCGGT	1 cut(s)	3393
CviQI	GTAC	7 cut(s)	424, 761, 899, 1175, 1402, 2030, 2500
DrdI	GACNNNNNNGTC	1 cut(s)	205
DseDI	GACNNNNNNGTC	1 cut(s)	205
EaeI	YGGCCR	4 cut(s)	1411, 1421, 1515, 1525
Eam1104I	CTCTTC	6 cut(s)	1288, 1605, 1701, 2673, 2678, 3525
EarI	CTCTTC	6 cut(s)	1288, 1605, 1701, 2673, 2678, 3525
EciI	GGCGGA	1 cut(s)	1598
Eco130I	CCWWGG	4 cut(s)	589, 2635, 2774, 3345
Eco24I	GRGCYC	2 cut(s)	1734, 2695
Eco47I	GGWCC	5 cut(s)	734, 880, 1085, 1449, 1495
Eco81I	CCTNAGG	2 cut(s)	1116, 3510
Eco88I	CYCGRG	3 cut(s)	1695, 1811, 1844
EcoNI	CCTNNNNNAGG	1 cut(s)	1991
EcoO109I	RGGNCCY	7 cut(s)	108, 880, 1085, 1428, 1449, 1532, 3683
EcoRI	GAATTC	3 cut(s)	886, 1107, 3518
EcoRII	CCWGG	2 cut(s)	953, 3685
EcoT14I	CCWWGG	4 cut(s)	589, 2635, 2774, 3345
EcoT38I	GRGCYC	2 cut(s)	1734, 2695
ErhI	CCWWGG	4 cut(s)	589, 2635, 2774, 3345
FalI	AAGNNNNNCTT	2 cut(s)	2895, 2927
FaqI	GGGAC	7 cut(s)	607, 1098, 1435, 2151, 2205, 2712, 3658
FauI	CCCGC	1 cut(s)	1460
FauNDI	CATATG	2 cut(s)	1210, 2380
FbaI	TGATCA	2 cut(s)	15, 2841
FblI	GTMKAC	1 cut(s)	3301
FriOI	GRGCYC	2 cut(s)	1734, 2695
FspBI	CTAG	9 cut(s)	512, 590, 729, 1319, 1511, 2636, 2775, 3182, 3255
GlaI	GCGC	1 cut(s)	773
GsaI	CCCAGC	1 cut(s)	3694
GsuI	CTGGAG	4 cut(s)	222, 726, 2876, 3632
HapII	CCGG	6 cut(s)	693, 1424, 1528, 2591, 3380, 3394
HgaI	GACGC	1 cut(s)	2714
HhaI	GCGC	1 cut(s)	774
Hin6I	GCGC	1 cut(s)	772
HinP1I	GCGC	1 cut(s)	772
HincII	GTYRAC	3 cut(s)	1259, 2529, 3004
HindII	GTYRAC	3 cut(s)	1259, 2529, 3004
HindIII	AAGCTT	4 cut(s)	185, 606, 2909, 3455
HpaII	CCGG	6 cut(s)	693, 1424, 1528, 2591, 3380, 3394
HphI	GGTGA	3 cut(s)	707, 1976, 2224
Hpy99I	CGWCG	2 cut(s)	1567, 1582
HpyCH4IV	ACGT	2 cut(s)	540, 777
HpySE526I	ACGT	2 cut(s)	540, 777
HspAI	GCGC	1 cut(s)	772
KflI	GGGWCCC	2 cut(s)	1085, 1449
KpnI	GGTACC	1 cut(s)	902
Ksp22I	TGATCA	2 cut(s)	15, 2841
LguI	GCTCTTC	1 cut(s)	1288
LmnI	GCTCC	4 cut(s)	404, 869, 1689, 1729
LweI	GCATC	7 cut(s)	327, 974, 1009, 2389, 2757, 2824, 3646
MaeI	CTAG	9 cut(s)	512, 590, 729, 1319, 1511, 2636, 2775, 3182, 3255
MaeII	ACGT	2 cut(s)	540, 777
MaeIII	GTNAC	6 cut(s)	562, 916, 2297, 2371, 3356, 3599
MbiI	CCGCTC	1 cut(s)	3190
MfeI	CAATTG	2 cut(s)	903, 1239
MflI	RGATCY	2 cut(s)	2118, 3535
MhlI	GDGCHC	4 cut(s)	1290, 1734, 2695, 3254
MlsI	TGGCCA	2 cut(s)	1413, 1517
MluNI	TGGCCA	2 cut(s)	1413, 1517
MlyI	GAGTC	7 cut(s)	174, 692, 1595, 1780, 2630, 2975, 3640
MmeI	TCCRAC	9 cut(s)	227, 283, 654, 1342, 1616, 1746, 2262, 2953, 3404
Mox20I	TGGCCA	2 cut(s)	1413, 1517
MscI	TGGCCA	2 cut(s)	1413, 1517
MseI	TTAA	7 cut(s)	611, 1701, 2181, 2247, 2414, 2913, 3738
MslI	CAYNNNNRTG	3 cut(s)	1283, 1743, 2892
Msp20I	TGGCCA	2 cut(s)	1413, 1517
MspA1I	CMGCKG	2 cut(s)	3290, 3713
MspI	CCGG	6 cut(s)	693, 1424, 1528, 2591, 3380, 3394
MspR9I	CCNGG	5 cut(s)	693, 955, 1425, 1529, 3687
MunI	CAATTG	2 cut(s)	903, 1239
Mva1269I	GAATGC	1 cut(s)	103
MvaI	CCWGG	2 cut(s)	955, 3687
MvnI	CGCG	2 cut(s)	344, 772
NciI	CCSGG	3 cut(s)	693, 1425, 1529
NcoI	CCATGG	1 cut(s)	3345
NdeI	CATATG	2 cut(s)	1210, 2380
NmeAIII	GCCGAG	1 cut(s)	1597
NmuCI	GTSAC	3 cut(s)	562, 3356, 3599
NspI	RCATGY	5 cut(s)	463, 1265, 2338, 3467, 3727
PaeI	GCATGC	1 cut(s)	3727
PaeR7I	CTCGAG	1 cut(s)	1811
PciI	ACATGT	2 cut(s)	1261, 3463
PciSI	GCTCTTC	1 cut(s)	1288
PcsI	WCGNNNNNNNCGW	2 cut(s)	348, 357
PctI	GAATGC	1 cut(s)	103
PfeI	GAWTC	6 cut(s)	516, 677, 1393, 2521, 3162, 3563
PflMI	CCANNNNNTGG	1 cut(s)	876
PinAI	ACCGGT	1 cut(s)	3393
PleI	GAGTC	7 cut(s)	173, 691, 1594, 1780, 2629, 2974, 3640
PpsI	GAGTC	7 cut(s)	173, 691, 1594, 1780, 2629, 2974, 3640
PpuMI	RGGWCCY	3 cut(s)	880, 1085, 1449
PscI	ACATGT	2 cut(s)	1261, 3463
PshBI	ATTAAT	1 cut(s)	2247
Psp1406I	AACGTT	1 cut(s)	777
Psp5II	RGGWCCY	3 cut(s)	880, 1085, 1449
Psp6I	CCWGG	2 cut(s)	953, 3685
PspFI	CCCAGC	1 cut(s)	3690
PspGI	CCWGG	2 cut(s)	953, 3685
PspPPI	RGGWCCY	3 cut(s)	880, 1085, 1449
PstI	CTGCAG	3 cut(s)	412, 2547, 3289
PsuI	RGATCY	2 cut(s)	2118, 3535
PvuII	CAGCTG	1 cut(s)	3290
RsaI	GTAC	7 cut(s)	425, 762, 900, 1176, 1403, 2031, 2501
RsaNI	GTAC	7 cut(s)	424, 761, 899, 1175, 1402, 2030, 2500
RseI	CAYNNNNRTG	3 cut(s)	1283, 1743, 2892
SapI	GCTCTTC	1 cut(s)	1288
SaqAI	TTAA	7 cut(s)	611, 1701, 2181, 2247, 2414, 2913, 3738
SchI	GAGTC	7 cut(s)	174, 692, 1595, 1780, 2630, 2975, 3640
ScrFI	CCNGG	5 cut(s)	693, 955, 1425, 1529, 3687
SduI	GDGCHC	4 cut(s)	1290, 1734, 2695, 3254
SfaNI	GCATC	7 cut(s)	327, 974, 1009, 2389, 2757, 2824, 3646
SfcI	CTRYAG	4 cut(s)	408, 2508, 2543, 3285
Sfr274I	CTCGAG	1 cut(s)	1811
SinI	GGWCC	5 cut(s)	734, 880, 1085, 1449, 1495
SlaI	CTCGAG	1 cut(s)	1811
SmiMI	CAYNNNNRTG	3 cut(s)	1283, 1743, 2892
SmlI	CTYRAG	3 cut(s)	1604, 1811, 2694
SmoI	CTYRAG	3 cut(s)	1604, 1811, 2694
SphI	GCATGC	1 cut(s)	3727
SsiI	CCGC	8 cut(s)	378, 732, 1071, 1453, 1583, 3058, 3190, 3711
SspI	AATATT	2 cut(s)	1181, 3240
SspMI	CTAG	9 cut(s)	512, 590, 729, 1319, 1511, 2636, 2775, 3182, 3255
StyD4I	CCNGG	5 cut(s)	691, 953, 1423, 1527, 3685
StyI	CCWWGG	4 cut(s)	589, 2635, 2774, 3345
TaiI	ACGT	2 cut(s)	543, 780
TaqI	TCGA	6 cut(s)	7, 22, 360, 1689, 1812, 3165
TatI	WGTACW	4 cut(s)	423, 1174, 1401, 2499
TauI	GCSGC	1 cut(s)	3061
TfiI	GAWTC	6 cut(s)	516, 677, 1393, 2521, 3162, 3563
Tru1I	TTAA	7 cut(s)	611, 1701, 2181, 2247, 2414, 2913, 3738
Tru9I	TTAA	7 cut(s)	611, 1701, 2181, 2247, 2414, 2913, 3738
TseFI	GTSAC	3 cut(s)	562, 3356, 3599
Tsp45I	GTSAC	3 cut(s)	562, 3356, 3599
TspGWI	ACGGA	1 cut(s)	1480
Van91I	CCANNNNNTGG	1 cut(s)	876
VpaK11BI	GGWCC	5 cut(s)	734, 880, 1085, 1449, 1495
VspI	ATTAAT	1 cut(s)	2247
XagI	CCTNNNNNAGG	1 cut(s)	1991
XapI	RAATTY	8 cut(s)	136, 324, 886, 1107, 2253, 2615, 3029, 3518
XceI	RCATGY	5 cut(s)	463, 1265, 2338, 3467, 3727
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2138
XhoI	CTCGAG	1 cut(s)	1811
XmaJI	CCTAGG	3 cut(s)	589, 2635, 2774
XmiI	GTMKAC	1 cut(s)	3301
XspI	CTAG	9 cut(s)	512, 590, 729, 1319, 1511, 2636, 2775, 3182, 3255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.