Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003343

Physical Location & Seq

Genomic Coordinates Reverse (-)

12864090 .. 12866596

Gene Structure 2507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017103

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGGCTCGAATGATGATCACTCGGAAAACAGTATCAGCAGTAGCACTTTTAGGATGGACAGTGTTCATTAGCCTCCTTATGATAAGTGAAGTTGTCAGTGCAGAAAGGCCCCTAAAAGATGAGCAGAAGCCAAGAAATTTTGTTGAAGAAGATGTAAAGGAAGGAGCCTTTGTGAGAATGATGAAGCTTCTCTGGCAGACTGGAGGGTCTTCTTATCGACCTGTTTGGCCTGAGATGAAGTTTGGTTGGAAAATTGTAGTGGGAACAATAGTTGGGTTCTTTGGTGCTGCATTGGGTAGTGTTGGAGGTGTTGGTGGTGGAGGAATTTTTGTTCCGATGCTCGCGTTGATCGTTGGTTTTGATCCCAAGTCTTCCACCGCCATTTCCAAGTGTATGATAATGGGAGCTGCAGGCTCAACAGTGTACTTCAATTTGAGACTTAGGCACCCAACACTGGACATGCCCCTTATAGATTATGATCTGGCTTTGCTCTTTCAGCCAATGCTTATGCTAGGAATCAGCATTGGAGTTGCCTTCAACGTCATGTTTGCCGATTGGATGGTCACAGTTCTACTCATCATTCTTTTCTTAGGGACAGCAGCAAAAGCTTTAATGAAAGGCATACAAACATGGAAGAAAGAAACAATGATGAAGAAGGAAGCCGAAAAGCAGTTGGAATCGGAGTCCAAACCCGATGGTTCTGGAGAAGACTACAAACCATTACCTAGTGGTCCAGTTTCATTGCAAGATGAAGAAGTACCTGTCTCGCGCAACGTTTACTGGAAAGAGTTGTTATTGCTTGTGTTTGTGTGGGTGGCTTTCCTTATTGTTCAGATTGTCAAGACATATACCGAGACTTGCTCCACCCTGTTCTGGGTCCTGAATTCCTTGCAGGTACCAATTGCTGCCTCAGTAACGGTTTTTGAAGCGATATGCTTGTGGAAAGGCACCAAGGTAATTGCATCAAAAGGAAAGGAAATCACAAACTGGAAGTTGCATCAGCTATTTCTTTACTGCTGCTGTGGGATTGTAGCTGGTATGGTTGGTGGACTACTTGGCCTCGGAGGCGGTTTCATCTTGGGACCCCTATTTCTTGAACTTGGAATTCCTCCTCAGGTAGCAAGTGCTACATCAACCTTTGCTATGCTATTCTCATCCTCCATGTCAGTTGTACAATATTACCTTCTCAACCGTTTCCCAGTTCCATATGCTGCTTATTTTGTTTTGGTTGCTACAATTGCTGCCTTCACTGGTCAACATGTCGTGAGAAAGATCATTGCAGTGCTCGGAAGAGCCTCCATCGTCATCTTTATACTAGCTATGACGATTTTTGTCAGCGCAATCAGCTTAGGGGGGGTCGGAATAGCAAACATGGTTGAGAAGATGGAGAATCAAGAGTACATGGGGTTTGAAAATTTCTGTCACCAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TauE

Protein Analysis

478

Amino Acids

52.29

Weight (kDa)

8.68

Isoelectric Point (pI)

29.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TauE	PF01925	90 - 209	2.3e-12	Sulfite exporter TauE/SafE
TauE	PF01925	339 - 445	2.9e-13	Sulfite exporter TauE/SafE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66750
fragaria_vesca	FvH4_1g13430 FvH4_1g13430 FvH4_1g13430 FvH4_1g13440 FvH4_1g13440
malus_domestica	MD02G1149400.v1.1 MD02G1149600.v1.1 MD15G1264100.v1.1 MD15G1264200.v1.1
prunus_persica	Prupe.3G299700_v2.0.a1 Prupe.7G153300_v2.0.a1 Prupe.7G153400_v2.0.a1 Prupe.7G153400_v2.0.a1
pyrus_communis	pycom02g11750 pycom02g11770 pycom15g22990
rosa_chinensis	RchiOBHm_Chr2g0101811 RchiOBHm_Chr2g0101821
rosa_laevigata	RLG00000017102 RLG00000017103
rosa_multiflora	Rmu_co8045018.1_g000001 Rmu_sc0000838.1_g000003
rosa_roxburghii	Rroxscaffold_2G00141020
rosa_rugosa	Rorug02G0102000 Rorug07G0333200
rosa_samantha	Rh2AG149400 Rh2AG149500 Rh2BG155000 Rh2BG155100 Rh2CG155400 Rh2CG155500 Rh2DG155200 Rh2DG155300
rosa_wichuraiana	Rw2G011690 Rw2G011700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	205
Acc36I	ACCTGC	1 cut(s)	883
Acc65I	GGTACC	1 cut(s)	895
AccB1I	GGYRCC	3 cut(s)	444, 895, 947
AccII	CGCG	2 cut(s)	344, 769
AciI	CCGC	2 cut(s)	378, 1068
AclI	AACGTT	1 cut(s)	774
AclWI	GGATC	1 cut(s)	356
AcsI	RAATTY	5 cut(s)	136, 324, 883, 1104, 1414
AfaI	GTAC	5 cut(s)	425, 759, 897, 1173, 1400
AfiI	CCNNNNNNNGG	3 cut(s)	454, 873, 874
AflIII	ACRYGT	1 cut(s)	1258
AgsI	TTSAA	6 cut(s)	146, 430, 538, 926, 1097, 1412
AloI	GAACNNNNNNTCC	2 cut(s)	315, 347
AluBI	AGCT	7 cut(s)	187, 407, 608, 1003, 1034, 1319, 1347
AluI	AGCT	7 cut(s)	187, 407, 608, 1003, 1034, 1319, 1347
Alw21I	GWGCWC	1 cut(s)	1287
Alw26I	GTCTC	3 cut(s)	430, 769, 848
AlwI	GGATC	1 cut(s)	356
AoxI	GGCC	3 cut(s)	107, 227, 1057
ApeKI	GCWGC	7 cut(s)	287, 407, 599, 905, 1017, 1211, 1241
ApoI	RAATTY	5 cut(s)	136, 324, 883, 1104, 1414
Asp718I	GGTACC	1 cut(s)	895
AspLEI	GCGC	2 cut(s)	771, 1340
AspS9I	GGNCC	4 cut(s)	108, 731, 877, 1082
AsuHPI	GGTGA	1 cut(s)	1415
AvaII	GGWCC	3 cut(s)	731, 877, 1082
AxyI	CCTNAGG	1 cut(s)	1113
BanI	GGYRCC	3 cut(s)	444, 895, 947
BbsI	GAAGAC	3 cut(s)	201, 363, 714
Bbv12I	GWGCWC	1 cut(s)	1287
BbvI	GCAGC	7 cut(s)	274, 394, 611, 892, 1004, 1198, 1228
BccI	CCATC	5 cut(s)	48, 553, 689, 1307, 1378
BclI	TGATCA	1 cut(s)	15
BcoDI	GTCTC	3 cut(s)	430, 769, 848
BfaI	CTAG	3 cut(s)	512, 726, 1316
BfmI	CTRYAG	1 cut(s)	408
BfuAI	ACCTGC	1 cut(s)	883
BglI	GCCNNNNNGGC	1 cut(s)	1065
BisI	GCNGC	7 cut(s)	288, 408, 600, 906, 1018, 1212, 1242
BlsI	GCNGC	7 cut(s)	289, 409, 601, 907, 1019, 1213, 1243
Bme18I	GGWCC	3 cut(s)	731, 877, 1082
BmgT120I	GGNCC	4 cut(s)	108, 731, 877, 1082
BmiI	GGNNCC	8 cut(s)	110, 166, 446, 878, 897, 949, 1083, 1084
BmrI	ACTGGG	1 cut(s)	1193
BmsI	GCATC	3 cut(s)	327, 971, 1006
BmuI	ACTGGG	1 cut(s)	1193
BpiI	GAAGAC	3 cut(s)	201, 363, 714
BplI	GAGNNNNNCTC	2 cut(s)	845, 877
BpmI	CTGGAG	2 cut(s)	222, 723
Bpu10I	CCTNAGC	1 cut(s)	1348
BsaBI	GATNNNNATC	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	951, 1060
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
Bsc4I	CCNNNNNNNGG	3 cut(s)	454, 873, 874
Bse1I	ACTGG	8 cut(s)	205, 459, 734, 785, 992, 1199, 1255, 1426
Bse21I	CCTNAGG	1 cut(s)	1113
Bse3DI	GCAATG	2 cut(s)	740, 1275
Bse8I	GATNNNNATC	1 cut(s)	477
BseDI	CCNNGG	2 cut(s)	951, 1060
BseGI	GGATG	3 cut(s)	59, 564, 1154
BseJI	GATNNNNATC	1 cut(s)	477
BseLI	CCNNNNNNNGG	3 cut(s)	454, 873, 874
BseMI	GCAATG	2 cut(s)	740, 1275
BseMII	CTCAG	3 cut(s)	222, 924, 1127
BseNI	ACTGG	8 cut(s)	205, 459, 734, 785, 992, 1199, 1255, 1426
BseRI	GAGGAG	1 cut(s)	1101
BseXI	GCAGC	7 cut(s)	274, 394, 611, 892, 1004, 1198, 1228
BsgI	GTGCAG	1 cut(s)	120
Bsh1236I	CGCG	2 cut(s)	344, 769
BshFI	GGCC	3 cut(s)	109, 229, 1059
BshNI	GGYRCC	3 cut(s)	444, 895, 947
BsiHKAI	GWGCWC	1 cut(s)	1287
BslFI	GGGAC	2 cut(s)	607, 1095
BslI	CCNNNNNNNGG	3 cut(s)	454, 873, 874
BsmAI	GTCTC	3 cut(s)	430, 769, 848
BsmFI	GGGAC	2 cut(s)	607, 1095
BsnI	GGCC	3 cut(s)	109, 229, 1059
Bsp1286I	GDGCHC	1 cut(s)	1287
Bsp1407I	TGTACA	1 cut(s)	1171
Bsp143I	GATC	5 cut(s)	15, 348, 361, 478, 1272
BspACI	CCGC	2 cut(s)	378, 1068
BspANI	GGCC	3 cut(s)	109, 229, 1059
BspCNI	CTCAG	3 cut(s)	223, 923, 1126
BspFNI	CGCG	2 cut(s)	344, 769
BspLI	GGNNCC	8 cut(s)	110, 166, 446, 878, 897, 949, 1083, 1084
BspMAI	CTGCAG	1 cut(s)	412
BspMI	ACCTGC	1 cut(s)	883
BspPI	GGATC	1 cut(s)	356
BspQI	GCTCTTC	1 cut(s)	1285
BspT107I	GGYRCC	3 cut(s)	444, 895, 947
BsrDI	GCAATG	2 cut(s)	740, 1275
BsrGI	TGTACA	1 cut(s)	1171
BsrI	ACTGG	8 cut(s)	205, 459, 734, 785, 992, 1199, 1255, 1426
BssECI	CCNNGG	2 cut(s)	951, 1060
BssMI	GATC	5 cut(s)	15, 348, 361, 478, 1272
BssT1I	CCWWGG	1 cut(s)	951
Bst4CI	ACNGT	6 cut(s)	31, 61, 421, 568, 919, 1193
Bst6I	CTCTTC	1 cut(s)	1285
BstAUI	TGTACA	1 cut(s)	1171
BstC8I	GCNNGC	2 cut(s)	342, 412
BstDEI	CTNAG	6 cut(s)	231, 440, 589, 910, 1113, 1348
BstF5I	GGATG	3 cut(s)	59, 564, 1154
BstFNI	CGCG	2 cut(s)	344, 769
BstHHI	GCGC	2 cut(s)	771, 1340
BstKTI	GATC	5 cut(s)	18, 351, 364, 481, 1275
BstMAI	GTCTC	3 cut(s)	430, 769, 848
BstMBI	GATC	5 cut(s)	15, 348, 361, 478, 1272
BstMWI	GCNNNNNNNGC	6 cut(s)	193, 496, 605, 1065, 1238, 1344
BstNSI	RCATGY	2 cut(s)	463, 1262
BstSFI	CTRYAG	1 cut(s)	408
BstUI	CGCG	2 cut(s)	344, 769
BstV1I	GCAGC	7 cut(s)	274, 394, 611, 892, 1004, 1198, 1228
BstV2I	GAAGAC	3 cut(s)	201, 363, 714
Bsu36I	CCTNAGG	1 cut(s)	1113
BsuRI	GGCC	3 cut(s)	109, 229, 1059
BtsCI	GGATG	3 cut(s)	59, 564, 1154
BtsI	GCAGTG	1 cut(s)	1287
BtsIMutI	CAGTG	6 cut(s)	66, 103, 426, 452, 1248, 1287
BveI	ACCTGC	1 cut(s)	883
Cac8I	GCNNGC	2 cut(s)	342, 412
CfoI	GCGC	2 cut(s)	771, 1340
Cfr13I	GGNCC	4 cut(s)	108, 731, 877, 1082
Csp6I	GTAC	5 cut(s)	424, 758, 896, 1172, 1399
CviAII	CATG	7 cut(s)	460, 544, 630, 1162, 1259, 1372, 1402
CviQI	GTAC	5 cut(s)	424, 758, 896, 1172, 1399
DdeI	CTNAG	6 cut(s)	231, 440, 589, 910, 1113, 1348
DpnI	GATC	5 cut(s)	17, 350, 363, 480, 1274
DpnII	GATC	5 cut(s)	15, 348, 361, 478, 1272
DrdI	GACNNNNNNGTC	1 cut(s)	205
DseDI	GACNNNNNNGTC	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	1285
EarI	CTCTTC	1 cut(s)	1285
Eco130I	CCWWGG	1 cut(s)	951
Eco47I	GGWCC	3 cut(s)	731, 877, 1082
Eco81I	CCTNAGG	1 cut(s)	1113
EcoO109I	RGGNCCY	3 cut(s)	108, 877, 1082
EcoRI	GAATTC	2 cut(s)	883, 1104
EcoT14I	CCWWGG	1 cut(s)	951
ErhI	CCWWGG	1 cut(s)	951
FaeI	CATG	7 cut(s)	463, 547, 633, 1165, 1262, 1375, 1405
FaqI	GGGAC	2 cut(s)	607, 1095
FatI	CATG	7 cut(s)	459, 543, 629, 1161, 1258, 1371, 1401
FauNDI	CATATG	1 cut(s)	1207
FbaI	TGATCA	1 cut(s)	15
Fnu4HI	GCNGC	7 cut(s)	288, 408, 600, 906, 1018, 1212, 1242
FokI	GGATG	3 cut(s)	66, 571, 1141
Fsp4HI	GCNGC	7 cut(s)	288, 408, 600, 906, 1018, 1212, 1242
FspBI	CTAG	3 cut(s)	512, 726, 1316
GlaI	GCGC	2 cut(s)	770, 1339
GluI	GCNGC	7 cut(s)	288, 408, 600, 906, 1018, 1212, 1242
GsuI	CTGGAG	2 cut(s)	222, 723
HaeIII	GGCC	3 cut(s)	109, 229, 1059
HhaI	GCGC	2 cut(s)	771, 1340
Hin1II	CATG	7 cut(s)	463, 547, 633, 1165, 1262, 1375, 1405
Hin6I	GCGC	2 cut(s)	769, 1338
HinP1I	GCGC	2 cut(s)	769, 1338
HincII	GTYRAC	1 cut(s)	1256
HindII	GTYRAC	1 cut(s)	1256
HindIII	AAGCTT	2 cut(s)	185, 606
HinfI	GANTC	4 cut(s)	516, 677, 683, 1390
HphI	GGTGA	1 cut(s)	1415
Hpy166II	GTNNAC	4 cut(s)	424, 778, 1049, 1256
Hpy188I	TCNGA	7 cut(s)	24, 336, 682, 834, 1064, 1289, 1361
Hpy188III	TCNNGA	6 cut(s)	702, 841, 880, 1094, 1264, 1394
Hpy8I	GTNNAC	4 cut(s)	424, 778, 1049, 1256
HpyAV	CCTTC	5 cut(s)	155, 544, 649, 1193, 1255
HpyCH4III	ACNGT	6 cut(s)	31, 61, 421, 568, 919, 1193
HpyCH4IV	ACGT	2 cut(s)	540, 774
HpyCH4V	TGCA	8 cut(s)	101, 290, 410, 745, 892, 962, 997, 1280
HpyF10VI	GCNNNNNNNGC	6 cut(s)	193, 496, 605, 1065, 1238, 1344
HpyF3I	CTNAG	6 cut(s)	231, 440, 589, 910, 1113, 1348
HpySE526I	ACGT	2 cut(s)	540, 774
Hsp92II	CATG	7 cut(s)	463, 547, 633, 1165, 1262, 1375, 1405
HspAI	GCGC	2 cut(s)	769, 1338
KflI	GGGWCCC	1 cut(s)	1082
KpnI	GGTACC	1 cut(s)	899
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	5 cut(s)	15, 348, 361, 478, 1272
LguI	GCTCTTC	1 cut(s)	1285
LmnI	GCTCC	3 cut(s)	164, 404, 866
Lsp1109I	GCAGC	7 cut(s)	274, 394, 611, 892, 1004, 1198, 1228
LweI	GCATC	3 cut(s)	327, 971, 1006
MaeI	CTAG	3 cut(s)	512, 726, 1316
MaeII	ACGT	2 cut(s)	540, 774
MaeIII	GTNAC	3 cut(s)	562, 913, 1421
MalI	GATC	5 cut(s)	17, 350, 363, 480, 1274
MboI	GATC	5 cut(s)	15, 348, 361, 478, 1272
MfeI	CAATTG	2 cut(s)	900, 1236
MhlI	GDGCHC	1 cut(s)	1287
MlyI	GAGTC	1 cut(s)	692
MmeI	TCCRAC	4 cut(s)	227, 283, 654, 1339
MseI	TTAA	2 cut(s)	611, 1432
MslI	CAYNNNNRTG	1 cut(s)	1280
MunI	CAATTG	2 cut(s)	900, 1236
MvnI	CGCG	2 cut(s)	344, 769
MwoI	GCNNNNNNNGC	6 cut(s)	193, 496, 605, 1065, 1238, 1344
NdeI	CATATG	1 cut(s)	1207
NdeII	GATC	5 cut(s)	15, 348, 361, 478, 1272
NlaIII	CATG	7 cut(s)	463, 547, 633, 1165, 1262, 1375, 1405
NlaIV	GGNNCC	8 cut(s)	110, 166, 446, 878, 897, 949, 1083, 1084
NmuCI	GTSAC	2 cut(s)	562, 1421
NspI	RCATGY	2 cut(s)	463, 1262
PciI	ACATGT	1 cut(s)	1258
PciSI	GCTCTTC	1 cut(s)	1285
PcsI	WCGNNNNNNNCGW	1 cut(s)	348
PfeI	GAWTC	3 cut(s)	516, 677, 1390
PkrI	GCNGC	7 cut(s)	289, 409, 601, 907, 1019, 1213, 1243
PleI	GAGTC	1 cut(s)	691
PpsI	GAGTC	1 cut(s)	691
PpuMI	RGGWCCY	2 cut(s)	877, 1082
PscI	ACATGT	1 cut(s)	1258
Psp1406I	AACGTT	1 cut(s)	774
Psp5II	RGGWCCY	2 cut(s)	877, 1082
PspN4I	GGNNCC	8 cut(s)	110, 166, 446, 878, 897, 949, 1083, 1084
PspPI	GGNCC	4 cut(s)	108, 731, 877, 1082
PspPPI	RGGWCCY	2 cut(s)	877, 1082
PstI	CTGCAG	1 cut(s)	412
RsaI	GTAC	5 cut(s)	425, 759, 897, 1173, 1400
RsaNI	GTAC	5 cut(s)	424, 758, 896, 1172, 1399
RseI	CAYNNNNRTG	1 cut(s)	1280
SapI	GCTCTTC	1 cut(s)	1285
SaqAI	TTAA	2 cut(s)	611, 1432
SatI	GCNGC	7 cut(s)	288, 408, 600, 906, 1018, 1212, 1242
Sau3AI	GATC	5 cut(s)	15, 348, 361, 478, 1272
Sau96I	GGNCC	4 cut(s)	108, 731, 877, 1082
SchI	GAGTC	1 cut(s)	692
SduI	GDGCHC	1 cut(s)	1287
SfaNI	GCATC	3 cut(s)	327, 971, 1006
SfcI	CTRYAG	1 cut(s)	408
SinI	GGWCC	3 cut(s)	731, 877, 1082
SmiMI	CAYNNNNRTG	1 cut(s)	1280
SsiI	CCGC	2 cut(s)	378, 1068
SspI	AATATT	1 cut(s)	1178
SspMI	CTAG	3 cut(s)	512, 726, 1316
StyI	CCWWGG	1 cut(s)	951
TaaI	ACNGT	6 cut(s)	31, 61, 421, 568, 919, 1193
TaiI	ACGT	2 cut(s)	543, 777
TaqI	TCGA	2 cut(s)	7, 217
TatI	WGTACW	3 cut(s)	423, 1171, 1398
TfiI	GAWTC	3 cut(s)	516, 677, 1390
Tru1I	TTAA	2 cut(s)	611, 1432
Tru9I	TTAA	2 cut(s)	611, 1432
TscAI	CASTG	6 cut(s)	66, 103, 426, 459, 1255, 1287
TseFI	GTSAC	2 cut(s)	562, 1421
TseI	GCWGC	7 cut(s)	287, 407, 599, 905, 1017, 1211, 1241
Tsp45I	GTSAC	2 cut(s)	562, 1421
TspDTI	ATGAA	8 cut(s)	55, 197, 251, 629, 665, 729, 765, 1063
TspRI	CASTG	6 cut(s)	66, 103, 426, 459, 1255, 1287
VpaK11BI	GGWCC	3 cut(s)	731, 877, 1082
XapI	RAATTY	5 cut(s)	136, 324, 883, 1104, 1414
XceI	RCATGY	2 cut(s)	463, 1262
XspI	CTAG	3 cut(s)	512, 726, 1316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.