Rorug02G0102000

ATP-dependent DNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003343
Physical Location & Seq
Forward (+)
8713107 .. 8713533
427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0102000.1

Sequence Viewer

Length: 222 bp
ATGCGTATGTATAATGCTGAAAAGAATAAGCAAAGCCGGACTTCAGTCCATTGGAAAAATTTGGCTGGCATTCCTCCCCAACCTGGCAACAAGGAGTGCGGGTACTTTATCATGCGATACATGAGAGATATCATTGAGGATAAAGACATGTCATTGTTTCCTTCCAAGTGGGAGAGGAGAGGCAGCAGCCAATACACCCAAGCGGATATTGATCAAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000786 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006342 GO:0006344 GO:0006346 GO:0006349 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0010639 GO:0016043 GO:0016458 GO:0016462 GO:0016569 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031056 GO:0031057 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031401 GO:0032196 GO:0032197 GO:0032268 GO:0032269 GO:0032270 GO:0032392 GO:0032508 GO:0032991 GO:0032993 GO:0033043 GO:0033044 GO:0034641 GO:0035065 GO:0035067 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044030 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044764 GO:0044815 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0051570 GO:0051574 GO:0051704 GO:0060255 GO:0065007 GO:0070035 GO:0071103 GO:0071514 GO:0071704 GO:0071840 GO:0080090 GO:0090239 GO:0090241 GO:0090304 GO:0140097 GO:1901360 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1905269 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2001141 GO:2001251 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

73

Amino Acids

8.67

Weight (kDa)

9.2

Isoelectric Point (pI)

68.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 99, 203
AcsI RAATTY 1 cut(s) 58
AcuI CTGAAG 1 cut(s) 27
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 83
AflIII ACRYGT 1 cut(s) 147
AjnI CCWGG 1 cut(s) 82
ApeKI GCWGC 2 cut(s) 183, 186
ApoI RAATTY 1 cut(s) 58
BbvI GCAGC 2 cut(s) 195, 198
BciT130I CCWGG 1 cut(s) 84
BclI TGATCA 1 cut(s) 211
BisI GCNGC 2 cut(s) 184, 187
BlsI GCNGC 2 cut(s) 185, 188
Bme1390I CCNGG 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 84
BoxI GACNNNNGTC 1 cut(s) 44
BsaBI GATNNNNATC 1 cut(s) 210
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse8I GATNNNNATC 1 cut(s) 210
BseBI CCWGG 1 cut(s) 84
BseJI GATNNNNATC 1 cut(s) 210
BseLI CCNNNNNNNGG 1 cut(s) 83
BseRI GAGGAG 1 cut(s) 190
BseXI GCAGC 2 cut(s) 195, 198
BsiSI CCGG 1 cut(s) 37
BslI CCNNNNNNNGG 1 cut(s) 83
BsmI GAATGC 1 cut(s) 69
Bsp143I GATC 1 cut(s) 211
BspACI CCGC 2 cut(s) 99, 203
BssMI GATC 1 cut(s) 211
Bst2UI CCWGG 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 67
BstKTI GATC 1 cut(s) 214
BstMBI GATC 1 cut(s) 211
BstNI CCWGG 1 cut(s) 84
BstNSI RCATGY 1 cut(s) 151
BstPAI GACNNNNGTC 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 82
BstV1I GCAGC 2 cut(s) 195, 198
Cac8I GCNNGC 1 cut(s) 67
Csp6I GTAC 1 cut(s) 103
CviAII CATG 3 cut(s) 112, 121, 148
CviJI RGCY 3 cut(s) 36, 65, 189
CviKI_1 RGCY 3 cut(s) 36, 65, 189
CviQI GTAC 1 cut(s) 103
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
Eco32I GATATC 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 82
EcoRV GATATC 1 cut(s) 130
FaeI CATG 3 cut(s) 115, 124, 151
FaiI YATR 5 cut(s) 8, 12, 113, 122, 149
FalI AAGNNNNNCTT 2 cut(s) 25, 57
FatI CATG 3 cut(s) 111, 120, 147
FauI CCCGC 1 cut(s) 92
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 2 cut(s) 184, 187
Fsp4HI GCNGC 2 cut(s) 184, 187
GluI GCNGC 2 cut(s) 184, 187
HapII CCGG 1 cut(s) 37
Hin1II CATG 3 cut(s) 115, 124, 151
HpaII CCGG 1 cut(s) 37
HpyAV CCTTC 1 cut(s) 171
Hsp92II CATG 3 cut(s) 115, 124, 151
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 1 cut(s) 211
LpnPI CCDG 4 cut(s) 50, 51, 69, 96
Lsp1109I GCAGC 2 cut(s) 195, 198
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MluCI AATT 1 cut(s) 58
MnlI CCTC 4 cut(s) 84, 130, 168, 173
MspI CCGG 1 cut(s) 37
MspR9I CCNGG 1 cut(s) 84
Mva1269I GAATGC 1 cut(s) 69
MvaI CCWGG 1 cut(s) 84
NdeII GATC 1 cut(s) 211
NlaIII CATG 3 cut(s) 115, 124, 151
NspI RCATGY 1 cut(s) 151
PciI ACATGT 1 cut(s) 147
PctI GAATGC 1 cut(s) 69
PkrI GCNGC 2 cut(s) 185, 188
PscI ACATGT 1 cut(s) 147
PshAI GACNNNNGTC 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SatI GCNGC 2 cut(s) 184, 187
Sau3AI GATC 1 cut(s) 211
ScrFI CCNGG 1 cut(s) 84
SetI ASST 1 cut(s) 85
Sse9I AATT 1 cut(s) 58
SsiI CCGC 2 cut(s) 99, 203
StyD4I CCNGG 1 cut(s) 82
TasI AATT 1 cut(s) 58
TseI GCWGC 2 cut(s) 183, 186
XapI RAATTY 1 cut(s) 58
XceI RCATGY 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.