Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8045018.1

Orthogroup ID

OG0003343

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 404

Gene Structure 404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8045018.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atgcaatttggtgtggttctgtccggttgcttaggtatgatcacgggtggagcagctgcaactgttttttacaacttaaggttaaggcatcctactcttgacttgcccatcatcgactatgacctggcgcttcttttccaaccgatgcttatgcttgggattagcattggagtttgtttgaatgtaatatttgctgagtggatgattacagtgttgctaatcattattttcttaggcacatcaactaaggccttcttcaagggagttgagtcctggaaaagagaaactatactgaagaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TauE

Protein Analysis

100

Amino Acids

11.11

Weight (kDa)

8.71

Isoelectric Point (pI)

29.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66750
fragaria_vesca	FvH4_1g13430 FvH4_1g13430 FvH4_1g13430 FvH4_1g13440 FvH4_1g13440
malus_domestica	MD02G1149400.v1.1 MD02G1149600.v1.1 MD15G1264100.v1.1 MD15G1264200.v1.1
prunus_persica	Prupe.3G299700_v2.0.a1 Prupe.7G153300_v2.0.a1 Prupe.7G153400_v2.0.a1 Prupe.7G153400_v2.0.a1
pyrus_communis	pycom02g11750 pycom02g11770 pycom15g22990
rosa_chinensis	RchiOBHm_Chr2g0101811 RchiOBHm_Chr2g0101821
rosa_laevigata	RLG00000017102 RLG00000017103
rosa_multiflora	Rmu_co8045018.1_g000001 Rmu_sc0000838.1_g000003
rosa_roxburghii	Rroxscaffold_2G00141020
rosa_rugosa	Rorug02G0102000 Rorug07G0333200
rosa_samantha	Rh2AG149400 Rh2AG149500 Rh2BG155000 Rh2BG155100 Rh2CG155400 Rh2CG155500 Rh2DG155200 Rh2DG155300
rosa_wichuraiana	Rw2G011690 Rw2G011700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AflII	CTTAAG	1 cut(s)	76
AgsI	TTSAA	2 cut(s)	181, 259
AjnI	CCWGG	2 cut(s)	123, 272
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	2 cut(s)	53, 56
AspLEI	GCGC	1 cut(s)	130
BbvI	GCAGC	2 cut(s)	43, 65
BccI	CCATC	1 cut(s)	116
BcgI	CGANNNNNNTGC	2 cut(s)	133, 167
BciT130I	CCWGG	2 cut(s)	125, 274
BclI	TGATCA	1 cut(s)	39
BfoI	RGCGCY	1 cut(s)	131
BfrI	CTTAAG	1 cut(s)	76
BisI	GCNGC	2 cut(s)	54, 57
BlsI	GCNGC	2 cut(s)	55, 58
Bme1390I	CCNGG	2 cut(s)	125, 274
BmrFI	CCNGG	2 cut(s)	125, 274
BmsI	GCATC	2 cut(s)	97, 135
Bpu10I	CCTNAGC	1 cut(s)	31
BsaWI	WCCGGW	1 cut(s)	23
BseBI	CCWGG	2 cut(s)	125, 274
BseGI	GGATG	2 cut(s)	88, 207
BseMII	CTCAG	1 cut(s)	186
BseXI	GCAGC	2 cut(s)	43, 65
BshFI	GGCC	1 cut(s)	251
BsiSI	CCGG	1 cut(s)	24
BsnI	GGCC	1 cut(s)	251
Bsp143I	GATC	1 cut(s)	39
BspANI	GGCC	1 cut(s)	251
BspCNI	CTCAG	1 cut(s)	187
BspTI	CTTAAG	1 cut(s)	76
BssMI	GATC	1 cut(s)	39
Bst2UI	CCWGG	2 cut(s)	125, 274
Bst4CI	ACNGT	2 cut(s)	64, 211
BstAFI	CTTAAG	1 cut(s)	76
BstDEI	CTNAG	4 cut(s)	31, 195, 232, 246
BstF5I	GGATG	2 cut(s)	88, 207
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	1 cut(s)	42
BstMBI	GATC	1 cut(s)	39
BstNI	CCWGG	2 cut(s)	125, 274
BstSCI	CCNGG	2 cut(s)	123, 272
BstV1I	GCAGC	2 cut(s)	43, 65
BsuRI	GGCC	1 cut(s)	251
BtsCI	GGATG	2 cut(s)	88, 207
BtsIMutI	CAGTG	1 cut(s)	216
CfoI	GCGC	1 cut(s)	130
CviJI	RGCY	2 cut(s)	56, 251
CviKI_1	RGCY	2 cut(s)	56, 251
DdeI	CTNAG	4 cut(s)	31, 195, 232, 246
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
Eco147I	AGGCCT	1 cut(s)	251
EcoRII	CCWGG	2 cut(s)	123, 272
FaiI	YATR	4 cut(s)	38, 120, 152, 290
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FbaI	TGATCA	1 cut(s)	39
Fnu4HI	GCNGC	2 cut(s)	54, 57
FokI	GGATG	2 cut(s)	75, 214
Fsp4HI	GCNGC	2 cut(s)	54, 57
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	2 cut(s)	54, 57
HaeII	RGCGCY	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	1 cut(s)	24
HhaI	GCGC	1 cut(s)	130
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HinfI	GANTC	1 cut(s)	269
HpaII	CCGG	1 cut(s)	24
Hpy188III	TCNNGA	1 cut(s)	98
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	2 cut(s)	64, 211
HpyCH4V	TGCA	2 cut(s)	4, 59
HpyF3I	CTNAG	4 cut(s)	31, 195, 232, 246
HspAI	GCGC	1 cut(s)	128
Ksp22I	TGATCA	1 cut(s)	39
Kzo9I	GATC	1 cut(s)	39
LmnI	GCTCC	1 cut(s)	50
LpnPI	CCDG	5 cut(s)	37, 110, 137, 259, 286
Lsp1109I	GCAGC	2 cut(s)	43, 65
LweI	GCATC	2 cut(s)	97, 135
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MboII	GAAGA	1 cut(s)	247
MluCI	AATT	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	278
MmeI	TCCRAC	1 cut(s)	163
MseI	TTAA	2 cut(s)	77, 83
MspA1I	CMGCKG	1 cut(s)	56
MspCI	CTTAAG	1 cut(s)	76
MspI	CCGG	1 cut(s)	24
MspR9I	CCNGG	2 cut(s)	125, 274
MvaI	CCWGG	2 cut(s)	125, 274
NdeII	GATC	1 cut(s)	39
PceI	AGGCCT	1 cut(s)	251
PfoI	TCCNGGA	1 cut(s)	272
PkrI	GCNGC	2 cut(s)	55, 58
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
Psp6I	CCWGG	2 cut(s)	123, 272
PspGI	CCWGG	2 cut(s)	123, 272
PvuII	CAGCTG	1 cut(s)	56
SaqAI	TTAA	2 cut(s)	77, 83
SatI	GCNGC	2 cut(s)	54, 57
Sau3AI	GATC	1 cut(s)	39
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	2 cut(s)	125, 274
SetI	ASST	4 cut(s)	37, 58, 83, 126
SfaNI	GCATC	2 cut(s)	97, 135
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
Sse9I	AATT	1 cut(s)	5
SseBI	AGGCCT	1 cut(s)	251
SspI	AATATT	1 cut(s)	189
StuI	AGGCCT	1 cut(s)	251
StyD4I	CCNGG	2 cut(s)	123, 272
TaaI	ACNGT	2 cut(s)	64, 211
TaqI	TCGA	1 cut(s)	114
TasI	AATT	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	77, 83
Tru9I	TTAA	2 cut(s)	77, 83
TscAI	CASTG	1 cut(s)	216
TseI	GCWGC	2 cut(s)	53, 56
TspRI	CASTG	1 cut(s)	216
Vha464I	CTTAAG	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.