Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0004977

Physical Location & Seq

Genomic Coordinates Reverse (-)

12422379 .. 12428601

Gene Structure 6223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGAAAAACACTTCTACACGAGTTAGAGTGCGTGAGAGGTTTAACAAGGCAGCCTCCCTGGCTCTCTCTCTCTCTAGTATATTCACAACGACAGAGAGCAGAGAGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGAGAGCAGCGCCGTCCTTGGAGGTCTTCAGCCAAATTACCTTCTTTGCCCCTCCCGCAATCCTTCTTCCTCTCTTCCCCTCCGCCCCTTCTCCTTCACCTCCCATTCCTCTCCTCTCTCCTTAAAGCTTCAAAAGCAGCCTCCTTTGACTTCTCATGGAGCCGCCGCCGCAGCCGCCGCCTCTCCCATTGGCGGATATACCGCATCGTCCGATACGTTCGTTGAAACAAGTGAATTAGCGGACATCGATTGGGACAACCTTGGCTTTTTGTTTCATTCTACCGACTACATGTACGTCATGAAATGTGCTCAAGGCGGAAACTTTCCCAAAGGTGAATTACAAAGTTTTGGGAACATCGAATTGAGCCCCTCAGCCGGAGTCTTGAATTATGGGCAGGGATTGTTTGAAGGTTTGAAAGCCTACAGGAAAGAAGATGGTACTATACACTTGTTTCGACCTGAGGAAAATGCATTGCGGATGAGGTTGGGTGCAGAGCGGATGTGTATGCCATCACCAACTGTCAAACAGTTTGTTGAAGCTGTAAAGGCTACTGTTTTAGCAAATAAACGCTGGGTTCCCCCTCCAGGCAAAGGTTCCCTATATATCAGGCCATTGCTAATGGGTAGTGGTGCTGTTCTTGGTCTTGCACCTGCTCCGGAGTACACATTTCTTATTTATGTTTCACCCGTTGGAAACTATTTTCAGGAAGGTGTTGCACCCATAAATTTGATTGTCGAACATGAATTGCATCGTGCAACTCCTGGTGGTACTGGAGGGGTCAAGACTATAGGGAATTATGCCGCGGTTTTGAAGGCACAGTCTGCTGCAAAAGCGAAAGGCTATTCTGATGTTTTGTACCTCGACTGTGTTCACAAAAAATATCTAGAGGAGGTTTCCTTGTGCAATATTTTTGTTGTCAAGGATAATGTTATCTCTACTCCGGCAATAAAAGGGACAATCTTACCTGGCGTTACTCGAAAGAGTATAATTGATGTTGCTCGTAGCGAAGGATTCCAGGTTGAGGAGCGCCAAGTGGCAGTGGATGAATTACTTGATGCTGATGAAGTCTTCTGCACCGGAACAGCTGTGGTTGTATCACCTGTTGGCAGCATAACGTATCTTGGCAAAAAGGTTTCTTATGGAGAAGGTGGTTTTGGAGTCGTGTCGGAAAAGCTCTACTCTCTGCTTACCAGATTACAAATGGGTCTTTCAGAGGACAAGATGGATTGGACTGTTGAGCTAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

463

Amino Acids

50.21

Weight (kDa)

7.05

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_4	PF01063	180 - 418	1.9e-35	Amino-transferase class IV

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49680 AT3G49680 AT5G65780
fragaria_vesca	FvH4_1g18510 FvH4_2g32420
malus_domestica	MD02G1191100.v1.1 MD02G1191200.v1.1 MD02G1191300.v1.1 MD15G1063000.v1.1 MD15G1302500.v1.1
prunus_persica	Prupe.6G214200_v2.0.a1 Prupe.6G214200_v2.0.a1
pyrus_communis	pycom02g15550 pycom15g05960 pycom15g26550
rosa_chinensis	RchiOBHm_Chr2g0109141 RchiOBHm_Chr6g0310251
rosa_laevigata	RLG00000010495 RLG00000017716
rosa_multiflora	Rmu_sc0000186.1_g000017
rosa_roxburghii	Rroxscaffold_2G00134470 Rroxscaffold_7G00158700
rosa_rugosa	Rorug02G0157400 Rorug06G0378500
rosa_samantha	Rh2AG209500 Rh2BG219900 Rh6AG492700 Rh6CG507300 Rh6DG493500
rosa_wichuraiana	Rw6G042880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	799
Acc36I	ACCTGC	1 cut(s)	799
AccBSI	CCGCTC	1 cut(s)	637
AccII	CGCG	1 cut(s)	944
AccIII	TCCGGA	1 cut(s)	796
AcsI	RAATTY	1 cut(s)	865
AcuI	CTGAAG	1 cut(s)	152
AfaI	GTAC	5 cut(s)	434, 580, 803, 910, 998
AfiI	CCNNNNNNNGG	5 cut(s)	332, 515, 725, 731, 1162
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	7 cut(s)	272, 365, 526, 548, 556, 677, 952
AjnI	CCWGG	5 cut(s)	57, 724, 901, 1105, 1155
AjuI	GAANNNNNNNTTGG	2 cut(s)	1278, 1310
AluBI	AGCT	5 cut(s)	268, 680, 1226, 1315, 1381
AluI	AGCT	5 cut(s)	268, 680, 1226, 1315, 1381
Alw21I	GWGCWC	1 cut(s)	451
Aor13HI	TCCGGA	1 cut(s)	796
AoxI	GGCC	1 cut(s)	749
ApeKI	GCWGC	6 cut(s)	50, 147, 277, 311, 965, 1248
ApoI	RAATTY	1 cut(s)	865
AspLEI	GCGC	2 cut(s)	152, 1170
AsuHPI	GGTGA	5 cut(s)	229, 485, 645, 816, 1230
AxyI	CCTNAGG	1 cut(s)	600
BaeI	ACNNNNGTAYC	2 cut(s)	345, 378
BanII	GRGCYC	1 cut(s)	509
BauI	CACGAG	1 cut(s)	18
BbsI	GAAGAC	2 cut(s)	158, 1201
Bbv12I	GWGCWC	1 cut(s)	451
BbvCI	CCTCAGC	1 cut(s)	511
BbvI	GCAGC	6 cut(s)	62, 159, 289, 323, 952, 1260
BccI	CCATC	4 cut(s)	133, 569, 658, 1357
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	5 cut(s)	59, 726, 903, 1107, 1157
BfaI	CTAG	3 cut(s)	75, 1025, 1382
BfmI	CTRYAG	2 cut(s)	562, 927
BfoI	RGCGCY	2 cut(s)	153, 1171
BfuAI	ACCTGC	1 cut(s)	799
BglI	GCCNNNNNGGC	1 cut(s)	59
Bme1390I	CCNGG	5 cut(s)	59, 726, 903, 1107, 1157
BmiI	GGNNCC	3 cut(s)	301, 717, 736
BmrFI	CCNGG	5 cut(s)	59, 726, 903, 1107, 1157
BmsI	GCATC	3 cut(s)	353, 898, 1186
BpiI	GAAGAC	2 cut(s)	158, 1201
BpmI	CTGGAG	2 cut(s)	708, 933
Bpu10I	CCTNAGC	1 cut(s)	511
BpuEI	CTTGAG	1 cut(s)	435
Bsa29I	ATCGAT	1 cut(s)	387
BsaJI	CCNNGG	4 cut(s)	57, 157, 400, 942
BsaWI	WCCGGW	2 cut(s)	796, 1217
Bsc4I	CCNNNNNNNGG	5 cut(s)	332, 515, 725, 731, 1162
Bse1I	ACTGG	1 cut(s)	916
Bse21I	CCTNAGG	1 cut(s)	600
Bse3DI	GCAATG	2 cut(s)	611, 752
BseAI	TCCGGA	1 cut(s)	796
BseBI	CCWGG	5 cut(s)	59, 726, 903, 1107, 1157
BseCI	ATCGAT	1 cut(s)	387
BseDI	CCNNGG	4 cut(s)	57, 157, 400, 942
BseGI	GGATG	3 cut(s)	624, 645, 1189
BseLI	CCNNNNNNNGG	5 cut(s)	332, 515, 725, 731, 1162
BseMI	GCAATG	2 cut(s)	611, 752
BseMII	CTCAG	2 cut(s)	525, 591
BseNI	ACTGG	1 cut(s)	916
BseRI	GAGGAG	3 cut(s)	243, 1043, 1178
BseXI	GCAGC	6 cut(s)	62, 159, 289, 323, 952, 1260
BseYI	CCCAGC	1 cut(s)	711
BsgI	GTGCAG	2 cut(s)	651, 1198
Bsh1236I	CGCG	1 cut(s)	944
BshFI	GGCC	1 cut(s)	751
BshVI	ATCGAT	1 cut(s)	387
BsiHKAI	GWGCWC	1 cut(s)	451
BsiSI	CCGG	4 cut(s)	516, 797, 1082, 1218
BslFI	GGGAC	2 cut(s)	407, 1108
BslI	CCNNNNNNNGG	5 cut(s)	332, 515, 725, 731, 1162
BsmFI	GGGAC	2 cut(s)	407, 1108
BsnI	GGCC	1 cut(s)	751
Bsp1286I	GDGCHC	2 cut(s)	451, 509
Bsp13I	TCCGGA	1 cut(s)	796
BspANI	GGCC	1 cut(s)	751
BspCNI	CTCAG	2 cut(s)	524, 592
BspDI	ATCGAT	1 cut(s)	387
BspEI	TCCGGA	1 cut(s)	796
BspFNI	CGCG	1 cut(s)	944
BspHI	TCATGA	1 cut(s)	438
BspLI	GGNNCC	3 cut(s)	301, 717, 736
BspMI	ACCTGC	1 cut(s)	799
BsrBI	CCGCTC	1 cut(s)	637
BsrDI	GCAATG	2 cut(s)	611, 752
BsrI	ACTGG	1 cut(s)	916
BssECI	CCNNGG	4 cut(s)	57, 157, 400, 942
BssSI	CACGAG	1 cut(s)	18
BssT1I	CCWWGG	2 cut(s)	157, 400
Bst2BI	CACGAG	1 cut(s)	18
Bst2UI	CCWGG	5 cut(s)	59, 726, 903, 1107, 1157
Bst4CI	ACNGT	6 cut(s)	661, 669, 694, 960, 1007, 1375
Bst6I	CTCTTC	1 cut(s)	219
BstAPI	GCANNNNNTGC	1 cut(s)	962
BstDEI	CTNAG	2 cut(s)	511, 600
BstDSI	CCRYGG	1 cut(s)	942
BstF5I	GGATG	3 cut(s)	624, 645, 1189
BstFNI	CGCG	1 cut(s)	944
BstH2I	RGCGCY	2 cut(s)	153, 1171
BstHHI	GCGC	2 cut(s)	152, 1170
BstNI	CCWGG	5 cut(s)	59, 726, 903, 1107, 1157
BstNSI	RCATGY	1 cut(s)	433
BstSCI	CCNGG	5 cut(s)	57, 724, 901, 1105, 1155
BstSFI	CTRYAG	2 cut(s)	562, 927
BstUI	CGCG	1 cut(s)	944
BstV1I	GCAGC	6 cut(s)	62, 159, 289, 323, 952, 1260
BstV2I	GAAGAC	2 cut(s)	158, 1201
Bsu15I	ATCGAT	1 cut(s)	387
Bsu36I	CCTNAGG	1 cut(s)	600
BsuRI	GGCC	1 cut(s)	751
BsuTUI	ATCGAT	1 cut(s)	387
BtgI	CCRYGG	1 cut(s)	942
BtsCI	GGATG	3 cut(s)	624, 645, 1189
BtsI	GCAGTG	1 cut(s)	1185
BtsIMutI	CAGTG	1 cut(s)	1185
BveI	ACCTGC	1 cut(s)	799
CciI	TCATGA	1 cut(s)	438
CfoI	GCGC	2 cut(s)	152, 1170
Cfr42I	CCGCGG	1 cut(s)	945
ClaI	ATCGAT	1 cut(s)	387
Csp6I	GTAC	5 cut(s)	433, 579, 802, 909, 997
CviAII	CATG	4 cut(s)	296, 430, 439, 881
CviQI	GTAC	5 cut(s)	433, 579, 802, 909, 997
DdeI	CTNAG	2 cut(s)	511, 600
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
EciI	GGCGGA	3 cut(s)	212, 348, 471
Eco130I	CCWWGG	2 cut(s)	157, 400
Eco24I	GRGCYC	1 cut(s)	509
Eco57I	CTGAAG	1 cut(s)	152
Eco81I	CCTNAGG	1 cut(s)	600
EcoRII	CCWGG	5 cut(s)	57, 724, 901, 1105, 1155
EcoT14I	CCWWGG	2 cut(s)	157, 400
EcoT22I	ATGCAT	1 cut(s)	613
EcoT38I	GRGCYC	1 cut(s)	509
ErhI	CCWWGG	2 cut(s)	157, 400
FaeI	CATG	4 cut(s)	299, 433, 442, 884
FaqI	GGGAC	2 cut(s)	407, 1108
FatI	CATG	4 cut(s)	295, 429, 438, 880
FauI	CCCGC	1 cut(s)	203
FokI	GGATG	3 cut(s)	631, 652, 1196
FriOI	GRGCYC	1 cut(s)	509
FspBI	CTAG	3 cut(s)	75, 1025, 1382
GlaI	GCGC	2 cut(s)	151, 1169
GsaI	CCCAGC	1 cut(s)	715
GsuI	CTGGAG	2 cut(s)	708, 933
HaeII	RGCGCY	2 cut(s)	153, 1171
HaeIII	GGCC	1 cut(s)	751
HapII	CCGG	4 cut(s)	516, 797, 1082, 1218
HhaI	GCGC	2 cut(s)	152, 1170
Hin1II	CATG	4 cut(s)	299, 433, 442, 884
Hin6I	GCGC	2 cut(s)	150, 1168
HinP1I	GCGC	2 cut(s)	150, 1168
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	3 cut(s)	519, 1152, 1299
HpaII	CCGG	4 cut(s)	516, 797, 1082, 1218
HphI	GGTGA	5 cut(s)	229, 485, 645, 816, 1230
Hpy166II	GTNNAC	2 cut(s)	804, 1012
Hpy188I	TCNGA	4 cut(s)	352, 988, 1309, 1354
Hpy188III	TCNNGA	6 cut(s)	439, 523, 797, 845, 922, 1025
Hpy8I	GTNNAC	2 cut(s)	804, 1012
HpyAV	CCTTC	9 cut(s)	191, 213, 238, 244, 542, 842, 946, 1142, 1280
HpyCH4III	ACNGT	6 cut(s)	661, 669, 694, 960, 1007, 1375
HpyCH4IV	ACGT	3 cut(s)	356, 435, 1256
HpyCH4V	TGCA	9 cut(s)	611, 632, 788, 857, 889, 896, 968, 1044, 1215
HpyF3I	CTNAG	2 cut(s)	511, 600
HpySE526I	ACGT	3 cut(s)	356, 435, 1256
Hsp92II	CATG	4 cut(s)	299, 433, 442, 884
HspAI	GCGC	2 cut(s)	150, 1168
Kpn2I	TCCGGA	1 cut(s)	796
KspI	CCGCGG	1 cut(s)	945
LmnI	GCTCC	3 cut(s)	299, 799, 1165
Lsp1109I	GCAGC	6 cut(s)	62, 159, 289, 323, 952, 1260
LweI	GCATC	3 cut(s)	353, 898, 1186
MaeI	CTAG	3 cut(s)	75, 1025, 1382
MaeII	ACGT	3 cut(s)	356, 435, 1256
MaeIII	GTNAC	1 cut(s)	1111
MbiI	CCGCTC	1 cut(s)	637
MboII	GAAGA	5 cut(s)	158, 198, 206, 584, 1201
MhlI	GDGCHC	2 cut(s)	451, 509
MlyI	GAGTC	2 cut(s)	528, 1308
MmeI	TCCRAC	2 cut(s)	811, 1287
Mph1103I	ATGCAT	1 cut(s)	613
MroI	TCCGGA	1 cut(s)	796
MseI	TTAA	2 cut(s)	42, 263
MspA1I	CMGCKG	2 cut(s)	944, 1226
MspI	CCGG	4 cut(s)	516, 797, 1082, 1218
MspR9I	CCNGG	5 cut(s)	59, 726, 903, 1107, 1157
MvaI	CCWGG	5 cut(s)	59, 726, 903, 1107, 1157
MvnI	CGCG	1 cut(s)	944
NlaIII	CATG	4 cut(s)	299, 433, 442, 884
NlaIV	GGNNCC	3 cut(s)	301, 717, 736
NsiI	ATGCAT	1 cut(s)	613
NspI	RCATGY	1 cut(s)	433
PagI	TCATGA	1 cut(s)	438
PaqCI	CACCTGC	1 cut(s)	799
PciI	ACATGT	1 cut(s)	429
PcsI	WCGNNNNNNNCGW	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	1152
PleI	GAGTC	2 cut(s)	527, 1307
PpsI	GAGTC	2 cut(s)	527, 1307
PscI	ACATGT	1 cut(s)	429
Psp6I	CCWGG	5 cut(s)	57, 724, 901, 1105, 1155
PspFI	CCCAGC	1 cut(s)	711
PspGI	CCWGG	5 cut(s)	57, 724, 901, 1105, 1155
PspN4I	GGNNCC	3 cut(s)	301, 717, 736
PvuII	CAGCTG	1 cut(s)	1226
RsaI	GTAC	5 cut(s)	434, 580, 803, 910, 998
RsaNI	GTAC	5 cut(s)	433, 579, 802, 909, 997
SacII	CCGCGG	1 cut(s)	945
SaqAI	TTAA	2 cut(s)	42, 263
SchI	GAGTC	2 cut(s)	528, 1308
ScrFI	CCNGG	5 cut(s)	59, 726, 903, 1107, 1157
SduI	GDGCHC	2 cut(s)	451, 509
SfaNI	GCATC	3 cut(s)	353, 898, 1186
SfcI	CTRYAG	2 cut(s)	562, 927
Sfr303I	CCGCGG	1 cut(s)	945
SgrBI	CCGCGG	1 cut(s)	945
SmlI	CTYRAG	1 cut(s)	450
SmoI	CTYRAG	1 cut(s)	450
SspI	AATATT	1 cut(s)	1048
SspMI	CTAG	3 cut(s)	75, 1025, 1382
StyD4I	CCNGG	5 cut(s)	57, 724, 901, 1105, 1155
StyI	CCWWGG	2 cut(s)	157, 400
TaaI	ACNGT	6 cut(s)	661, 669, 694, 960, 1007, 1375
TaiI	ACGT	3 cut(s)	359, 438, 1259
TaqI	TCGA	6 cut(s)	387, 498, 595, 876, 1002, 1117
TatI	WGTACW	1 cut(s)	801
TauI	GCSGC	6 cut(s)	305, 308, 311, 317, 320, 944
TfiI	GAWTC	1 cut(s)	1152
Tru1I	TTAA	2 cut(s)	42, 263
Tru9I	TTAA	2 cut(s)	42, 263
TscAI	CASTG	1 cut(s)	1185
TseI	GCWGC	6 cut(s)	50, 147, 277, 311, 965, 1248
TspDTI	ATGAA	6 cut(s)	17, 404, 455, 897, 1200, 1218
TspRI	CASTG	1 cut(s)	1185
XapI	RAATTY	1 cut(s)	865
XbaI	TCTAGA	1 cut(s)	1024
XceI	RCATGY	1 cut(s)	433
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1339
XspI	CTAG	3 cut(s)	75, 1025, 1382
Zsp2I	ATGCAT	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.