pycom02g26310

Thylakoid lumenal 19 kDa protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0005710
Physical Location & Seq
Reverse (-)
24129184 .. 24130077
894 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 756 bp
ATGGCTAACATGTTCTCACCCTCAACCTTCTTCTCCTCCACCACCACCAACACCACCAACAACATCACATCTCCAAAACCATCTCAAACTCCCCTACCGCCCAAATCCCACATCCCTATCCCACCCTCTAAACCACTCTTAACTACCTTAACCGCCACACTAACTGTCACCGCTGCTGCAGCTGCCATCCTAACCGCCCCTCCACCCTCGTTGGCAGACTCCACAGCAGAAACAACTTACCAAATCTACTACGGCACTGCTGCCAGCGCGGCCAACTATGGCGGTTACGGTGGCAACTCCGACAAGAAAGCCTCCGCCGAATATGTCTATGACGTGCCAGATGGATGGAAAGAGCGTTTGGTCTCAAAAGTCGAAAAGGGTACAAATGGGACTGATAGCGAATTTTACAACCCGAAGAAGAAGTCAGAAAAAGAGTACTTGACATTCCTTTCCGGGTTTAGGCAACTAGCACCGAAGGATGCGGTGCTGAACAATTTGGCTCTGTCAGATGTGAACTTGCAGGACTTGCTAGCAAGCGCGGATAATGTGACATCGGAGGAGAGGAAGGACGAGAAGGGACAGGTTTACTATGTGTATGAGATCGATGGAGTTGCTGCTCACAGTTTGATTTCAGTGACTTGTGCTCAGAACAAGCTGTATGCACATTTTGTCAATGCGCCAACGACAGAGTGGAACCGTGACCATGACTTGTTGCAGCATGTTCATGAGTCTTTCAAGACTATTGGATCTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

252

Amino Acids

27.28

Weight (kDa)

5.68

Isoelectric Point (pI)

35.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 106 - 246 6.5e-08 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 269, 539
AciI CCGC 9 cut(s) 98, 153, 171, 195, 269, 282, 315, 482, 539
AclWI GGATC 1 cut(s) 754
AcoI YGGCCR 1 cut(s) 270
AcsI RAATTY 1 cut(s) 401
AfaI GTAC 2 cut(s) 382, 437
AfiI CCNNNNNNNGG 1 cut(s) 459
AflIII ACRYGT 1 cut(s) 9
AgsI TTSAA 1 cut(s) 736
AjiI CACGTC 1 cut(s) 334
AjuI GAANNNNNNNTTGG 2 cut(s) 341, 373
AluBI AGCT 2 cut(s) 182, 655
AluI AGCT 2 cut(s) 182, 655
Alw21I GWGCWC 1 cut(s) 646
Alw26I GTCTC 1 cut(s) 367
AlwI GGATC 1 cut(s) 754
AoxI GGCC 1 cut(s) 270
ApeKI GCWGC 7 cut(s) 173, 176, 179, 182, 260, 614, 715
ApoI RAATTY 1 cut(s) 401
ArsI GACNNNNNNTTYG 2 cut(s) 407, 439
AspLEI GCGC 3 cut(s) 269, 539, 679
AsuC2I CCSGG 1 cut(s) 454
AsuHPI GGTGA 2 cut(s) 9, 160
AsuNHI GCTAGC 1 cut(s) 529
Bbv12I GWGCWC 1 cut(s) 646
BbvI GCAGC 7 cut(s) 160, 163, 169, 191, 247, 601, 727
BccI CCATC 5 cut(s) 88, 194, 335, 339, 599
BceAI ACGGC 1 cut(s) 268
BcgI CGANNNNNNTGC 2 cut(s) 593, 627
BcnI CCSGG 1 cut(s) 454
BcoDI GTCTC 1 cut(s) 367
BfaI CTAG 2 cut(s) 467, 530
BfmI CTRYAG 1 cut(s) 177
BglI GCCNNNNNGGC 1 cut(s) 269
BisI GCNGC 8 cut(s) 174, 177, 180, 183, 261, 270, 615, 716
BlsI GCNGC 8 cut(s) 175, 178, 181, 184, 262, 271, 616, 717
BmcAI AGTACT 1 cut(s) 437
Bme1390I CCNGG 1 cut(s) 454
BmgBI CACGTC 1 cut(s) 334
BmiI GGNNCC 1 cut(s) 695
BmrFI CCNGG 1 cut(s) 454
BmsI GCATC 1 cut(s) 469
BmtI GCTAGC 1 cut(s) 533
BpuMI CCSGG 1 cut(s) 454
Bsa29I ATCGAT 1 cut(s) 603
BsaI GGTCTC 1 cut(s) 367
BsaXI ACNNNNNCTCC 2 cut(s) 184, 214
Bsc4I CCNNNNNNNGG 1 cut(s) 459
BseCI ATCGAT 1 cut(s) 603
BseGI GGATG 4 cut(s) 111, 186, 350, 484
BseLI CCNNNNNNNGG 1 cut(s) 459
BseMII CTCAG 1 cut(s) 659
BseRI GAGGAG 2 cut(s) 25, 572
BseXI GCAGC 7 cut(s) 160, 163, 169, 191, 247, 601, 727
Bsh1236I CGCG 2 cut(s) 269, 539
BshFI GGCC 1 cut(s) 272
BshVI ATCGAT 1 cut(s) 603
BsiHKAI GWGCWC 1 cut(s) 646
BsiSI CCGG 1 cut(s) 453
BslFI GGGAC 2 cut(s) 403, 591
BslI CCNNNNNNNGG 1 cut(s) 459
BsmAI GTCTC 1 cut(s) 367
BsmFI GGGAC 2 cut(s) 403, 591
BsnI GGCC 1 cut(s) 272
Bso31I GGTCTC 1 cut(s) 367
Bsp1286I GDGCHC 1 cut(s) 646
Bsp143I GATC 2 cut(s) 600, 746
BspACI CCGC 9 cut(s) 98, 153, 171, 195, 269, 282, 315, 482, 539
BspANI GGCC 1 cut(s) 272
BspCNI CTCAG 1 cut(s) 658
BspDI ATCGAT 1 cut(s) 603
BspFNI CGCG 2 cut(s) 269, 539
BspHI TCATGA 1 cut(s) 724
BspLI GGNNCC 1 cut(s) 695
BspMAI CTGCAG 1 cut(s) 181
BspOI GCTAGC 1 cut(s) 533
BspPI GGATC 1 cut(s) 754
BspTNI GGTCTC 1 cut(s) 367
BssMI GATC 2 cut(s) 600, 746
Bst4CI ACNGT 4 cut(s) 166, 290, 623, 698
BstAPI GCANNNNNTGC 1 cut(s) 526
BstC8I GCNNGC 3 cut(s) 265, 531, 535
BstDEI CTNAG 1 cut(s) 645
BstF5I GGATG 4 cut(s) 111, 186, 350, 484
BstFNI CGCG 2 cut(s) 269, 539
BstHHI GCGC 3 cut(s) 269, 539, 679
BstKTI GATC 2 cut(s) 603, 749
BstMAI GTCTC 1 cut(s) 367
BstMBI GATC 2 cut(s) 600, 746
BstMWI GCNNNNNNNGC 5 cut(s) 179, 182, 266, 269, 526
BstNSI RCATGY 2 cut(s) 13, 722
BstSCI CCNGG 1 cut(s) 452
BstSFI CTRYAG 1 cut(s) 177
BstUI CGCG 2 cut(s) 269, 539
BstV1I GCAGC 7 cut(s) 160, 163, 169, 191, 247, 601, 727
BstX2I RGATCY 1 cut(s) 746
BstXI CCANNNNNNTGG 1 cut(s) 345
BstYI RGATCY 1 cut(s) 746
Bsu15I ATCGAT 1 cut(s) 603
BsuRI GGCC 1 cut(s) 272
BsuTUI ATCGAT 1 cut(s) 603
BtrI CACGTC 1 cut(s) 334
BtsCI GGATG 4 cut(s) 111, 186, 350, 484
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 2 cut(s) 255, 639
Cac8I GCNNGC 3 cut(s) 265, 531, 535
CciI TCATGA 1 cut(s) 724
CfoI GCGC 3 cut(s) 269, 539, 679
ClaI ATCGAT 1 cut(s) 603
Csp6I GTAC 2 cut(s) 381, 436
CspCI CAANNNNNGTGG 2 cut(s) 192, 227
CviAII CATG 4 cut(s) 10, 704, 719, 725
CviJI RGCY 6 cut(s) 5, 182, 272, 311, 500, 655
CviKI_1 RGCY 6 cut(s) 5, 182, 272, 311, 500, 655
CviQI GTAC 2 cut(s) 381, 436
DdeI CTNAG 1 cut(s) 645
DpnI GATC 2 cut(s) 602, 748
DpnII GATC 2 cut(s) 600, 746
EaeI YGGCCR 1 cut(s) 270
EciI GGCGGA 1 cut(s) 304
Eco31I GGTCTC 1 cut(s) 367
FaeI CATG 4 cut(s) 13, 707, 722, 728
FaqI GGGAC 2 cut(s) 403, 591
FatI CATG 4 cut(s) 9, 703, 718, 724
Fnu4HI GCNGC 8 cut(s) 174, 177, 180, 183, 261, 270, 615, 716
FokI GGATG 4 cut(s) 98, 173, 357, 491
Fsp4HI GCNGC 8 cut(s) 174, 177, 180, 183, 261, 270, 615, 716
FspBI CTAG 2 cut(s) 467, 530
GlaI GCGC 3 cut(s) 268, 538, 678
GluI GCNGC 8 cut(s) 174, 177, 180, 183, 261, 270, 615, 716
HaeIII GGCC 1 cut(s) 272
HapII CCGG 1 cut(s) 453
HhaI GCGC 3 cut(s) 269, 539, 679
Hin1II CATG 4 cut(s) 13, 707, 722, 728
Hin6I GCGC 3 cut(s) 267, 537, 677
HinP1I GCGC 3 cut(s) 267, 537, 677
HinfI GANTC 2 cut(s) 218, 728
HpaII CCGG 1 cut(s) 453
HphI GGTGA 2 cut(s) 9, 160
Hpy166II GTNNAC 2 cut(s) 514, 586
Hpy188I TCNGA 5 cut(s) 301, 427, 508, 556, 648
Hpy188III TCNNGA 2 cut(s) 725, 736
Hpy8I GTNNAC 2 cut(s) 514, 586
HpyAV CCTTC 4 cut(s) 37, 469, 559, 568
HpyCH4III ACNGT 4 cut(s) 166, 290, 623, 698
HpyCH4IV ACGT 1 cut(s) 333
HpyCH4V TGCA 4 cut(s) 179, 520, 662, 715
HpyF10VI GCNNNNNNNGC 5 cut(s) 179, 182, 266, 269, 526
HpyF3I CTNAG 1 cut(s) 645
HpySE526I ACGT 1 cut(s) 333
Hsp92II CATG 4 cut(s) 13, 707, 722, 728
HspAI GCGC 3 cut(s) 267, 537, 677
Kzo9I GATC 2 cut(s) 600, 746
LpnPI CCDG 5 cut(s) 277, 351, 466, 506, 566
Lsp1109I GCAGC 7 cut(s) 160, 163, 169, 191, 247, 601, 727
LweI GCATC 1 cut(s) 469
MaeI CTAG 2 cut(s) 467, 530
MaeII ACGT 1 cut(s) 333
MaeIII GTNAC 5 cut(s) 166, 284, 547, 634, 698
MalI GATC 2 cut(s) 602, 748
MboI GATC 2 cut(s) 600, 746
MboII GAAGA 3 cut(s) 22, 427, 430
MflI RGATCY 1 cut(s) 746
MhlI GDGCHC 1 cut(s) 646
MluCI AATT 2 cut(s) 401, 493
MlyI GAGTC 2 cut(s) 212, 737
MmeI TCCRAC 1 cut(s) 324
MnlI CCTC 8 cut(s) 31, 46, 136, 210, 217, 322, 550, 555
MseI TTAA 2 cut(s) 140, 149
MslI CAYNNNNRTG 1 cut(s) 723
MspA1I CMGCKG 2 cut(s) 173, 182
MspI CCGG 1 cut(s) 453
MspR9I CCNGG 1 cut(s) 454
MvnI CGCG 2 cut(s) 269, 539
MwoI GCNNNNNNNGC 5 cut(s) 179, 182, 266, 269, 526
NciI CCSGG 1 cut(s) 454
NdeII GATC 2 cut(s) 600, 746
NheI GCTAGC 1 cut(s) 529
NlaIII CATG 4 cut(s) 13, 707, 722, 728
NlaIV GGNNCC 1 cut(s) 695
NmuCI GTSAC 4 cut(s) 166, 547, 634, 698
NspI RCATGY 2 cut(s) 13, 722
PagI TCATGA 1 cut(s) 724
PciI ACATGT 1 cut(s) 9
PkrI GCNGC 8 cut(s) 175, 178, 181, 184, 262, 271, 616, 717
PleI GAGTC 2 cut(s) 212, 736
PpsI GAGTC 2 cut(s) 212, 736
PscI ACATGT 1 cut(s) 9
PspN4I GGNNCC 1 cut(s) 695
PstI CTGCAG 1 cut(s) 181
PsuI RGATCY 1 cut(s) 746
PvuII CAGCTG 1 cut(s) 182
RsaI GTAC 2 cut(s) 382, 437
RsaNI GTAC 2 cut(s) 381, 436
RseI CAYNNNNRTG 1 cut(s) 723
SaqAI TTAA 2 cut(s) 140, 149
SatI GCNGC 8 cut(s) 174, 177, 180, 183, 261, 270, 615, 716
Sau3AI GATC 2 cut(s) 600, 746
ScaI AGTACT 1 cut(s) 437
SchI GAGTC 2 cut(s) 212, 737
ScrFI CCNGG 1 cut(s) 454
SduI GDGCHC 1 cut(s) 646
SetI ASST 6 cut(s) 29, 149, 184, 336, 585, 657
SfaNI GCATC 1 cut(s) 469
SfcI CTRYAG 1 cut(s) 177
SmiMI CAYNNNNRTG 1 cut(s) 723
Sse9I AATT 2 cut(s) 401, 493
SsiI CCGC 9 cut(s) 98, 153, 171, 195, 269, 282, 315, 482, 539
SspMI CTAG 2 cut(s) 467, 530
StyD4I CCNGG 1 cut(s) 452
TaaI ACNGT 4 cut(s) 166, 290, 623, 698
TaiI ACGT 1 cut(s) 336
TaqI TCGA 2 cut(s) 372, 603
TasI AATT 2 cut(s) 401, 493
TatI WGTACW 1 cut(s) 435
TauI GCSGC 1 cut(s) 272
Tru1I TTAA 2 cut(s) 140, 149
Tru9I TTAA 2 cut(s) 140, 149
TscAI CASTG 2 cut(s) 262, 639
TseFI GTSAC 4 cut(s) 166, 547, 634, 698
TseI GCWGC 7 cut(s) 173, 176, 179, 182, 260, 614, 715
Tsp45I GTSAC 4 cut(s) 166, 547, 634, 698
TspDTI ATGAA 1 cut(s) 713
TspRI CASTG 2 cut(s) 262, 639
XapI RAATTY 1 cut(s) 401
XceI RCATGY 2 cut(s) 13, 722
XcmI CCANNNNNNNNNTGG 1 cut(s) 687
XspI CTAG 2 cut(s) 467, 530
ZrmI AGTACT 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.