pycom03g00030

intracellular protein transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0005553
Physical Location & Seq
Reverse (-)
14560 .. 15568
1009 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g00030.1

Sequence Viewer

Length: 309 bp
ATGTTCTTGTTGGGTTTTTTCTATGGGGTTCTTGCATTGCTCGGATTGTGGCAGAAGGAGGCAAAGATCTTGTTTTTGGGTCTCGACAATGCCGGCAAGACGACGTTGCTTCATAGGCTCAAAGATGAGGTATCGTTTGGTATGCAGATGGGACGGGATAAGACGGAACGGAACGAAACGAGAGCAAAGATGCCCTCGGATGGAAATAAGGAGGAAGAAGGAGACGGAAATGTTATAATTTTATGTTCCACGGATGTGGAACGAGTCGTTCCAGGGGGTGAGGTGGAACGAAAATTCATCCAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
Arf

Protein Analysis

103

Amino Acids

11.46

Weight (kDa)

5.41

Isoelectric Point (pI)

36.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 8 - 43 2.1e-10 ADP-ribosylation factor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 236
AcsI RAATTY 1 cut(s) 293
AfiI CCNNNNNNNGG 1 cut(s) 200
AjnI CCWGG 1 cut(s) 271
AleI CACNNNNGTG 1 cut(s) 254
Alw26I GTCTC 2 cut(s) 86, 216
ApoI RAATTY 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 290
BccI CCATC 2 cut(s) 142, 194
BciT130I CCWGG 1 cut(s) 273
BcoDI GTCTC 2 cut(s) 86, 216
BfaI CTAG 1 cut(s) 307
BglII AGATCT 1 cut(s) 66
Bme1390I CCNGG 1 cut(s) 273
BmrFI CCNGG 1 cut(s) 273
BmsI GCATC 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 3 cut(s) 195, 249, 272
Bsc4I CCNNNNNNNGG 1 cut(s) 200
Bse118I RCCGGY 1 cut(s) 92
Bse3DI GCAATG 1 cut(s) 35
BseBI CCWGG 1 cut(s) 273
BseDI CCNNGG 3 cut(s) 195, 249, 272
BseGI GGATG 3 cut(s) 205, 259, 297
BseLI CCNNNNNNNGG 1 cut(s) 200
BseMI GCAATG 1 cut(s) 35
BsiSI CCGG 1 cut(s) 93
BslFI GGGAC 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 200
BsmAI GTCTC 2 cut(s) 86, 216
BsmBI CGTCTC 1 cut(s) 216
BsmFI GGGAC 1 cut(s) 165
Bso31I GGTCTC 1 cut(s) 86
Bsp143I GATC 1 cut(s) 66
BspTNI GGTCTC 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 35
BsrFI RCCGGY 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 3 cut(s) 195, 249, 272
BssMI GATC 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 273
BstC8I GCNNGC 1 cut(s) 94
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 3 cut(s) 205, 259, 297
BstKTI GATC 1 cut(s) 69
BstMAI GTCTC 2 cut(s) 86, 216
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 1 cut(s) 115
BstNI CCWGG 1 cut(s) 273
BstSCI CCNGG 1 cut(s) 271
BstX2I RGATCY 1 cut(s) 66
BstXI CCANNNNNNTGG 1 cut(s) 256
BstYI RGATCY 1 cut(s) 66
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 3 cut(s) 205, 259, 297
Cac8I GCNNGC 1 cut(s) 94
Cfr10I RCCGGY 1 cut(s) 92
CviJI RGCY 1 cut(s) 118
CviKI_1 RGCY 1 cut(s) 118
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 271
Esp3I CGTCTC 1 cut(s) 216
FaiI YATR 5 cut(s) 24, 114, 143, 236, 244
FaqI GGGAC 1 cut(s) 165
FokI GGATG 3 cut(s) 212, 266, 284
FspBI CTAG 1 cut(s) 307
HapII CCGG 1 cut(s) 93
HinfI GANTC 1 cut(s) 264
HpaII CCGG 1 cut(s) 93
HphI GGTGA 1 cut(s) 290
Hpy188I TCNGA 2 cut(s) 44, 199
Hpy188III TCNNGA 1 cut(s) 83
Hpy99I CGWCG 1 cut(s) 106
HpyAV CCTTC 2 cut(s) 49, 212
HpyCH4IV ACGT 1 cut(s) 104
HpyCH4V TGCA 2 cut(s) 35, 145
HpyF10VI GCNNNNNNNGC 1 cut(s) 115
HpySE526I ACGT 1 cut(s) 104
KroI GCCGGC 1 cut(s) 92
KroNI GCCGGC 1 cut(s) 94
Kzo9I GATC 1 cut(s) 66
LpnPI CCDG 3 cut(s) 106, 258, 285
LweI GCATC 1 cut(s) 180
MaeI CTAG 1 cut(s) 307
MaeII ACGT 1 cut(s) 104
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 1 cut(s) 227
MflI RGATCY 1 cut(s) 66
MluCI AATT 2 cut(s) 237, 293
MlyI GAGTC 1 cut(s) 273
MnlI CCTC 5 cut(s) 52, 121, 205, 205, 274
MroNI GCCGGC 1 cut(s) 92
MslI CAYNNNNRTG 1 cut(s) 254
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 1 cut(s) 273
MvaI CCWGG 1 cut(s) 273
MwoI GCNNNNNNNGC 1 cut(s) 115
NaeI GCCGGC 1 cut(s) 94
NdeII GATC 1 cut(s) 66
NgoMIV GCCGGC 1 cut(s) 92
OliI CACNNNNGTG 1 cut(s) 254
PdiI GCCGGC 1 cut(s) 94
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
PsiI TTATAA 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PsuI RGATCY 1 cut(s) 66
RseI CAYNNNNRTG 1 cut(s) 254
Sau3AI GATC 1 cut(s) 66
SchI GAGTC 1 cut(s) 273
ScrFI CCNGG 1 cut(s) 273
SetI ASST 3 cut(s) 107, 132, 285
SfaNI GCATC 1 cut(s) 180
SmiMI CAYNNNNRTG 1 cut(s) 254
Sse9I AATT 2 cut(s) 237, 293
SspMI CTAG 1 cut(s) 307
StyD4I CCNGG 1 cut(s) 271
TaiI ACGT 1 cut(s) 107
TaqI TCGA 1 cut(s) 84
TasI AATT 2 cut(s) 237, 293
TspDTI ATGAA 2 cut(s) 101, 286
TspGWI ACGGA 4 cut(s) 179, 184, 240, 266
XapI RAATTY 1 cut(s) 293
XspI CTAG 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.