Rh2AG444900
ERF Family

Belongs to the small GTPase superfamily. SAR1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0005553
Physical Location & Seq
Forward (+)
65744064 .. 65744848
785 bp
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UTR
Exon/CDS
Intron
Rh2AG444900.1

Sequence Viewer

Length: 309 bp
ATGTTTCTATTCGACTGGTTGTACGGGGTGCTCGCTTCCCTCGGTCTGTGGCAGAAGGAGGCCAAGATCTTATTCCTAGTGCTCAATAATGCCGGCAAGACCACCTTGCTTCACATGCTCAAAGATGAGAGGCTAGTGCAGCATCAACCAACGCAATTTCCCACATCCGAGGAGTTGAGAATTGGCAAAATCAATTTCAAGGCCTTTGATTTGGGAGGTCATCAGATTGCTCGCAGGGTCTGTAAGGATTACTACGCAAAGGTAGATATTGTGGTGTACCCTGTGGATGCCTACGATGGTTTTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
Arf

Protein Analysis

102

Amino Acids

11.81

Weight (kDa)

8.71

Isoelectric Point (pI)

28.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 9 - 99 6.8e-30 ADP-ribosylation factor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 23, 278
AgsI TTSAA 1 cut(s) 199
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
Alw21I GWGCWC 2 cut(s) 33, 84
AlwNI CAGNNNCTG 1 cut(s) 240
AoxI GGCC 2 cut(s) 60, 201
ApeKI GCWGC 1 cut(s) 139
Bbv12I GWGCWC 2 cut(s) 33, 84
BbvI GCAGC 1 cut(s) 151
BccI CCATC 1 cut(s) 290
BfaI CTAG 2 cut(s) 77, 134
BglII AGATCT 1 cut(s) 66
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
BmsI GCATC 2 cut(s) 151, 277
BsaJI CCNNGG 2 cut(s) 40, 168
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 20
BseDI CCNNGG 2 cut(s) 40, 168
BseGI GGATG 2 cut(s) 164, 292
BseNI ACTGG 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 151
BsgI GTGCAG 1 cut(s) 158
BshFI GGCC 2 cut(s) 62, 203
BsiHKAI GWGCWC 2 cut(s) 33, 84
BsiSI CCGG 1 cut(s) 93
BsnI GGCC 2 cut(s) 62, 203
Bsp1286I GDGCHC 2 cut(s) 33, 84
Bsp143I GATC 1 cut(s) 66
BspANI GGCC 2 cut(s) 62, 203
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 1 cut(s) 20
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 2 cut(s) 40, 168
BssMI GATC 1 cut(s) 66
BstC8I GCNNGC 3 cut(s) 33, 94, 232
BstF5I GGATG 2 cut(s) 164, 292
BstKTI GATC 1 cut(s) 69
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 2 cut(s) 115, 139
BstNSI RCATGY 1 cut(s) 118
BstV1I GCAGC 1 cut(s) 151
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BsuRI GGCC 2 cut(s) 62, 203
BtsCI GGATG 2 cut(s) 164, 292
Cac8I GCNNGC 3 cut(s) 33, 94, 232
CaiI CAGNNNCTG 1 cut(s) 240
Cfr10I RCCGGY 1 cut(s) 92
Csp6I GTAC 2 cut(s) 22, 277
CviAII CATG 1 cut(s) 115
CviJI RGCY 3 cut(s) 62, 133, 203
CviKI_1 RGCY 3 cut(s) 62, 133, 203
CviQI GTAC 2 cut(s) 22, 277
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
Eco147I AGGCCT 1 cut(s) 203
FaeI CATG 1 cut(s) 118
FaiI YATR 1 cut(s) 116
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FatI CATG 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 140
FokI GGATG 2 cut(s) 151, 299
Fsp4HI GCNGC 1 cut(s) 140
FspBI CTAG 2 cut(s) 77, 134
GluI GCNGC 1 cut(s) 140
HaeIII GGCC 2 cut(s) 62, 203
HapII CCGG 1 cut(s) 93
Hin1II CATG 1 cut(s) 118
HpaII CCGG 1 cut(s) 93
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 2 cut(s) 169, 225
Hpy8I GTNNAC 1 cut(s) 277
HpyAV CCTTC 1 cut(s) 49
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 139
Hsp92II CATG 1 cut(s) 118
KroI GCCGGC 1 cut(s) 92
KroNI GCCGGC 1 cut(s) 94
Kzo9I GATC 1 cut(s) 66
LpnPI CCDG 3 cut(s) 106, 220, 294
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 2 cut(s) 151, 277
MaeI CTAG 2 cut(s) 77, 134
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MflI RGATCY 1 cut(s) 66
MhlI GDGCHC 2 cut(s) 33, 84
MluCI AATT 3 cut(s) 155, 180, 193
MnlI CCTC 5 cut(s) 50, 52, 123, 163, 209
MroNI GCCGGC 1 cut(s) 92
MseI TTAA 1 cut(s) 303
MspI CCGG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 115, 139
NaeI GCCGGC 1 cut(s) 94
NdeII GATC 1 cut(s) 66
NgoMIV GCCGGC 1 cut(s) 92
NlaIII CATG 1 cut(s) 118
NspI RCATGY 1 cut(s) 118
PceI AGGCCT 1 cut(s) 203
PdiI GCCGGC 1 cut(s) 94
PkrI GCNGC 1 cut(s) 141
PstNI CAGNNNCTG 1 cut(s) 240
PsuI RGATCY 1 cut(s) 66
RsaI GTAC 2 cut(s) 23, 278
RsaNI GTAC 2 cut(s) 22, 277
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 1 cut(s) 140
Sau3AI GATC 1 cut(s) 66
SduI GDGCHC 2 cut(s) 33, 84
SetI ASST 3 cut(s) 107, 220, 264
SfaNI GCATC 2 cut(s) 151, 277
Sse9I AATT 3 cut(s) 155, 180, 193
SseBI AGGCCT 1 cut(s) 203
SspMI CTAG 2 cut(s) 77, 134
StuI AGGCCT 1 cut(s) 203
TaqI TCGA 1 cut(s) 12
TaqII GACCGA 1 cut(s) 32
TasI AATT 3 cut(s) 155, 180, 193
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TseI GCWGC 1 cut(s) 139
XceI RCATGY 1 cut(s) 118
XspI CTAG 2 cut(s) 77, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.