Rh7BG179300
ERF Family

Belongs to the small GTPase superfamily. SAR1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0005553
Physical Location & Seq
Forward (+)
14192088 .. 14192417
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG179300.1

Sequence Viewer

Length: 330 bp
ATGTTTCTCTTCGACTGGTTCTACGGTGTGCTCGCTTCCCTCGGTGTGTGGCAGAAGGAGGCCAAGATCTTGTTCCTAGGGCTCGATAATGTCGGCAAGACCACCTTGCTTCACATGCTCAAAGATGAAAAGCTGGTGCAGCATCAACCTACGCAATATCCCACATCCGAGGAGTTGAGTATTGGCAAAATCAAGTTCAAGGCCTTTGATTTGGGAGGTCATCAGATTGCTCGCAGGGTCTGGAAGGATTACTACGCAAAGGTAGATGTTGTGGTGTACCTTGTGGATGCCTACAATGGTTTTAAGTGGCTCTCTCAATACATTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
Arf

Protein Analysis

109

Amino Acids

12.75

Weight (kDa)

9.07

Isoelectric Point (pI)

18.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 8 - 99 5.7e-35 ADP-ribosylation factor family
Roc PF08477 22 - 98 6.1e-07 Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1 PF01926 22 - 102 8.6e-07 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 278
AgsI TTSAA 1 cut(s) 199
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Alw21I GWGCWC 1 cut(s) 33
AlwNI CAGNNNCTG 1 cut(s) 240
AoxI GGCC 2 cut(s) 60, 201
ApeKI GCWGC 1 cut(s) 139
AspA2I CCTAGG 1 cut(s) 76
AvrII CCTAGG 1 cut(s) 76
BanII GRGCYC 1 cut(s) 84
BarI GAAGNNNNNNTAC 2 cut(s) 236, 268
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 151
BfaI CTAG 1 cut(s) 77
BglII AGATCT 1 cut(s) 66
BisI GCNGC 1 cut(s) 140
BlnI CCTAGG 1 cut(s) 76
BlsI GCNGC 1 cut(s) 141
BmsI GCATC 2 cut(s) 151, 277
BsaJI CCNNGG 3 cut(s) 40, 76, 168
Bse1I ACTGG 1 cut(s) 20
BseDI CCNNGG 3 cut(s) 40, 76, 168
BseGI GGATG 2 cut(s) 164, 292
BseNI ACTGG 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 151
BsgI GTGCAG 1 cut(s) 158
BshFI GGCC 2 cut(s) 62, 203
BsiHKAI GWGCWC 1 cut(s) 33
BsnI GGCC 2 cut(s) 62, 203
Bsp1286I GDGCHC 2 cut(s) 33, 84
Bsp143I GATC 1 cut(s) 66
BspANI GGCC 2 cut(s) 62, 203
BsrI ACTGG 1 cut(s) 20
BssECI CCNNGG 3 cut(s) 40, 76, 168
BssMI GATC 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 26
Bst6I CTCTTC 1 cut(s) 14
BstC8I GCNNGC 2 cut(s) 33, 232
BstF5I GGATG 2 cut(s) 164, 292
BstKTI GATC 1 cut(s) 69
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 2 cut(s) 115, 139
BstNSI RCATGY 1 cut(s) 118
BstV1I GCAGC 1 cut(s) 151
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BsuRI GGCC 2 cut(s) 62, 203
BtsCI GGATG 2 cut(s) 164, 292
Cac8I GCNNGC 2 cut(s) 33, 232
CaiI CAGNNNCTG 1 cut(s) 240
Csp6I GTAC 1 cut(s) 277
CviAII CATG 1 cut(s) 115
CviJI RGCY 5 cut(s) 62, 82, 133, 203, 310
CviKI_1 RGCY 5 cut(s) 62, 82, 133, 203, 310
CviQI GTAC 1 cut(s) 277
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Eco130I CCWWGG 1 cut(s) 76
Eco147I AGGCCT 1 cut(s) 203
Eco24I GRGCYC 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 76
FaeI CATG 1 cut(s) 118
FaiI YATR 1 cut(s) 116
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FatI CATG 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 140
FokI GGATG 2 cut(s) 151, 299
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 1 cut(s) 140
FspBI CTAG 1 cut(s) 77
GluI GCNGC 1 cut(s) 140
HaeIII GGCC 2 cut(s) 62, 203
Hin1II CATG 1 cut(s) 118
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 2 cut(s) 169, 225
Hpy188III TCNNGA 1 cut(s) 241
Hpy8I GTNNAC 1 cut(s) 277
HpyAV CCTTC 2 cut(s) 49, 238
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 139
Hsp92II CATG 1 cut(s) 118
Kzo9I GATC 1 cut(s) 66
LpnPI CCDG 3 cut(s) 119, 220, 226
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 2 cut(s) 151, 277
MaeI CTAG 1 cut(s) 77
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MflI RGATCY 1 cut(s) 66
MhlI GDGCHC 2 cut(s) 33, 84
MnlI CCTC 4 cut(s) 50, 52, 163, 209
MseI TTAA 2 cut(s) 303, 324
MwoI GCNNNNNNNGC 2 cut(s) 115, 139
NdeII GATC 1 cut(s) 66
NlaIII CATG 1 cut(s) 118
NspI RCATGY 1 cut(s) 118
PceI AGGCCT 1 cut(s) 203
PkrI GCNGC 1 cut(s) 141
PstNI CAGNNNCTG 1 cut(s) 240
PsuI RGATCY 1 cut(s) 66
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
SaqAI TTAA 2 cut(s) 303, 324
SatI GCNGC 1 cut(s) 140
Sau3AI GATC 1 cut(s) 66
SduI GDGCHC 2 cut(s) 33, 84
SetI ASST 6 cut(s) 107, 135, 151, 220, 264, 282
SfaNI GCATC 2 cut(s) 151, 277
SseBI AGGCCT 1 cut(s) 203
SspMI CTAG 1 cut(s) 77
StuI AGGCCT 1 cut(s) 203
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 1 cut(s) 26
TaqI TCGA 2 cut(s) 12, 84
Tru1I TTAA 2 cut(s) 303, 324
Tru9I TTAA 2 cut(s) 303, 324
TseI GCWGC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 141
XceI RCATGY 1 cut(s) 118
XmaJI CCTAGG 1 cut(s) 76
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.