Rw2G036330

Sar1p-like members of the Ras-family of small GTPases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0005553
Physical Location & Seq
Forward (+)
59720479 .. 59721264
786 bp
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UTR
Exon/CDS
Intron
Rw2G036330.1

Sequence Viewer

Length: 276 bp
ATGTTTCTATTCGACTGGTTGTACGGCGTGCTCGCTTCCCTCGGTCTGTGGCAGAAGGAGGCCAAGATCTTATTCCTAGTGCTCAATAATGCCGGCAAGACCACCTTGCTTCACATGCTCAAAGATGAGAGGCTGGTGCAGCATCAACCTACGCAATATCCCACATCCGAGGAGTTGAGAATTGGCAAAATCAAGTTCAAGGCCTTTGATTTGGGAGGTCATCAAATTGTAGATGCTGTAGTGTACCCTGTGGATGCCTACGATGGTTTTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
Arf

Protein Analysis

91

Amino Acids

10.44

Weight (kDa)

6.82

Isoelectric Point (pI)

20.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 9 - 77 1.6e-21 ADP-ribosylation factor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 23, 245
AgsI TTSAA 1 cut(s) 199
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
Alw21I GWGCWC 2 cut(s) 33, 84
AoxI GGCC 2 cut(s) 60, 201
ApeKI GCWGC 1 cut(s) 139
Bbv12I GWGCWC 2 cut(s) 33, 84
BbvI GCAGC 1 cut(s) 151
BccI CCATC 1 cut(s) 257
BceAI ACGGC 1 cut(s) 40
BfaI CTAG 1 cut(s) 77
BfmI CTRYAG 1 cut(s) 237
BglII AGATCT 1 cut(s) 66
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
BmsI GCATC 3 cut(s) 151, 223, 244
BsaJI CCNNGG 2 cut(s) 40, 168
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 20
BseDI CCNNGG 2 cut(s) 40, 168
BseGI GGATG 2 cut(s) 164, 259
BseNI ACTGG 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 151
BsgI GTGCAG 1 cut(s) 158
BshFI GGCC 2 cut(s) 62, 203
BsiHKAI GWGCWC 2 cut(s) 33, 84
BsiSI CCGG 1 cut(s) 93
BsnI GGCC 2 cut(s) 62, 203
Bsp1286I GDGCHC 2 cut(s) 33, 84
Bsp143I GATC 1 cut(s) 66
BspANI GGCC 2 cut(s) 62, 203
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 1 cut(s) 20
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 2 cut(s) 40, 168
BssMI GATC 1 cut(s) 66
BstC8I GCNNGC 3 cut(s) 29, 33, 94
BstF5I GGATG 2 cut(s) 164, 259
BstKTI GATC 1 cut(s) 69
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 2 cut(s) 115, 139
BstNSI RCATGY 1 cut(s) 118
BstSFI CTRYAG 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 151
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BsuRI GGCC 2 cut(s) 62, 203
BtsCI GGATG 2 cut(s) 164, 259
Cac8I GCNNGC 3 cut(s) 29, 33, 94
Cfr10I RCCGGY 1 cut(s) 92
Csp6I GTAC 2 cut(s) 22, 244
CviAII CATG 1 cut(s) 115
CviJI RGCY 3 cut(s) 62, 133, 203
CviKI_1 RGCY 3 cut(s) 62, 133, 203
CviQI GTAC 2 cut(s) 22, 244
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
Eco147I AGGCCT 1 cut(s) 203
FaeI CATG 1 cut(s) 118
FaiI YATR 1 cut(s) 116
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FatI CATG 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 140
FokI GGATG 2 cut(s) 151, 266
Fsp4HI GCNGC 1 cut(s) 140
FspBI CTAG 1 cut(s) 77
GluI GCNGC 1 cut(s) 140
HaeIII GGCC 2 cut(s) 62, 203
HapII CCGG 1 cut(s) 93
Hin1II CATG 1 cut(s) 118
HpaII CCGG 1 cut(s) 93
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 1 cut(s) 169
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 1 cut(s) 49
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 139
Hsp92II CATG 1 cut(s) 118
KroI GCCGGC 1 cut(s) 92
KroNI GCCGGC 1 cut(s) 94
Kzo9I GATC 1 cut(s) 66
LpnPI CCDG 3 cut(s) 106, 119, 261
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 3 cut(s) 151, 223, 244
MaeI CTAG 1 cut(s) 77
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MflI RGATCY 1 cut(s) 66
MhlI GDGCHC 2 cut(s) 33, 84
MluCI AATT 2 cut(s) 180, 225
MnlI CCTC 5 cut(s) 50, 52, 123, 163, 209
MroNI GCCGGC 1 cut(s) 92
MseI TTAA 1 cut(s) 270
MspI CCGG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 115, 139
NaeI GCCGGC 1 cut(s) 94
NdeII GATC 1 cut(s) 66
NgoMIV GCCGGC 1 cut(s) 92
NlaIII CATG 1 cut(s) 118
NspI RCATGY 1 cut(s) 118
PceI AGGCCT 1 cut(s) 203
PdiI GCCGGC 1 cut(s) 94
PkrI GCNGC 1 cut(s) 141
PsuI RGATCY 1 cut(s) 66
RsaI GTAC 2 cut(s) 23, 245
RsaNI GTAC 2 cut(s) 22, 244
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 1 cut(s) 140
Sau3AI GATC 1 cut(s) 66
SduI GDGCHC 2 cut(s) 33, 84
SetI ASST 3 cut(s) 107, 151, 220
SfaNI GCATC 3 cut(s) 151, 223, 244
SfcI CTRYAG 1 cut(s) 237
Sse9I AATT 2 cut(s) 180, 225
SseBI AGGCCT 1 cut(s) 203
SspMI CTAG 1 cut(s) 77
StuI AGGCCT 1 cut(s) 203
TaqI TCGA 1 cut(s) 12
TaqII GACCGA 1 cut(s) 32
TasI AATT 2 cut(s) 180, 225
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TseI GCWGC 1 cut(s) 139
XceI RCATGY 1 cut(s) 118
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.