RchiOBHm_Chr7g0225801
ERF Family

Belongs to the small GTPase superfamily. SAR1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0005553
Physical Location & Seq
Reverse (-)
48703465 .. 48704246
782 bp
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UTR
Exon/CDS
Intron
PRQ20225

Sequence Viewer

Length: 309 bp
ATGTTTCTGTTTGATTGGTTGTACGGTGTGCTCGCTTCCCTCGGTATGTGGCAGAAGGAGGCCAAGATCTCATTCCTAGCGCTCAATAATGCTGGCAAGACCACCTTGCTTCACATGCTCAAAGATGAGAGGCTGGTGCAGCATCAACCTACGCAATATCCCACATCCGAGGAGTTGAGAATTGGCAAAATCAAGTTCAAGGCCTTTGATTTGGGAGGTCATCAGATTGCTTGCAGGGTCTGGAAGGATTACTACGCAAAGGTAGATGTTGTGGTGTACCTTGTGGATGCCTACGATGGTTTTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
Arf

Protein Analysis

102

Amino Acids

11.83

Weight (kDa)

8.67

Isoelectric Point (pI)

20.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 9 - 99 4.2e-31 ADP-ribosylation factor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 23, 278
AfeI AGCGCT 1 cut(s) 81
AgsI TTSAA 1 cut(s) 199
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
Alw21I GWGCWC 1 cut(s) 33
AlwNI CAGNNNCTG 1 cut(s) 240
Aor51HI AGCGCT 1 cut(s) 81
AoxI GGCC 2 cut(s) 60, 201
ApeKI GCWGC 1 cut(s) 139
AspLEI GCGC 1 cut(s) 82
BarI GAAGNNNNNNTAC 2 cut(s) 236, 268
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 151
BccI CCATC 1 cut(s) 290
BfaI CTAG 1 cut(s) 77
BfoI RGCGCY 1 cut(s) 83
BglII AGATCT 1 cut(s) 66
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
BmsI GCATC 2 cut(s) 151, 277
BsaJI CCNNGG 2 cut(s) 40, 168
BseDI CCNNGG 2 cut(s) 40, 168
BseGI GGATG 2 cut(s) 164, 292
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 151
BsgI GTGCAG 1 cut(s) 158
BshFI GGCC 2 cut(s) 62, 203
BsiHKAI GWGCWC 1 cut(s) 33
BsnI GGCC 2 cut(s) 62, 203
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 1 cut(s) 66
BspANI GGCC 2 cut(s) 62, 203
BssECI CCNNGG 2 cut(s) 40, 168
BssMI GATC 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 26
BstC8I GCNNGC 3 cut(s) 33, 94, 232
BstF5I GGATG 2 cut(s) 164, 292
BstH2I RGCGCY 1 cut(s) 83
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 1 cut(s) 69
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 2 cut(s) 115, 139
BstNSI RCATGY 1 cut(s) 118
BstV1I GCAGC 1 cut(s) 151
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BsuRI GGCC 2 cut(s) 62, 203
BtsCI GGATG 2 cut(s) 164, 292
Cac8I GCNNGC 3 cut(s) 33, 94, 232
CaiI CAGNNNCTG 1 cut(s) 240
CfoI GCGC 1 cut(s) 82
Csp6I GTAC 2 cut(s) 22, 277
CviAII CATG 1 cut(s) 115
CviJI RGCY 3 cut(s) 62, 133, 203
CviKI_1 RGCY 3 cut(s) 62, 133, 203
CviQI GTAC 2 cut(s) 22, 277
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
Eco147I AGGCCT 1 cut(s) 203
Eco47III AGCGCT 1 cut(s) 81
FaeI CATG 1 cut(s) 118
FaiI YATR 2 cut(s) 47, 116
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FatI CATG 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 140
FokI GGATG 2 cut(s) 151, 299
Fsp4HI GCNGC 1 cut(s) 140
FspBI CTAG 1 cut(s) 77
GlaI GCGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 140
HaeII RGCGCY 1 cut(s) 83
HaeIII GGCC 2 cut(s) 62, 203
HhaI GCGC 1 cut(s) 82
Hin1II CATG 1 cut(s) 118
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 2 cut(s) 169, 225
Hpy188III TCNNGA 1 cut(s) 241
Hpy8I GTNNAC 1 cut(s) 277
HpyAV CCTTC 2 cut(s) 49, 238
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4V TGCA 2 cut(s) 139, 234
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 139
Hsp92II CATG 1 cut(s) 118
HspAI GCGC 1 cut(s) 80
Kzo9I GATC 1 cut(s) 66
LpnPI CCDG 4 cut(s) 78, 119, 220, 226
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 2 cut(s) 151, 277
MaeI CTAG 1 cut(s) 77
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MflI RGATCY 1 cut(s) 66
MhlI GDGCHC 1 cut(s) 33
MluCI AATT 1 cut(s) 180
MnlI CCTC 5 cut(s) 50, 52, 123, 163, 209
MseI TTAA 1 cut(s) 303
MwoI GCNNNNNNNGC 2 cut(s) 115, 139
NdeII GATC 1 cut(s) 66
NlaIII CATG 1 cut(s) 118
NspI RCATGY 1 cut(s) 118
PceI AGGCCT 1 cut(s) 203
PkrI GCNGC 1 cut(s) 141
PstNI CAGNNNCTG 1 cut(s) 240
PsuI RGATCY 1 cut(s) 66
RsaI GTAC 2 cut(s) 23, 278
RsaNI GTAC 2 cut(s) 22, 277
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 1 cut(s) 140
Sau3AI GATC 1 cut(s) 66
SduI GDGCHC 1 cut(s) 33
SetI ASST 5 cut(s) 107, 151, 220, 264, 282
SfaNI GCATC 2 cut(s) 151, 277
Sse9I AATT 1 cut(s) 180
SseBI AGGCCT 1 cut(s) 203
SspMI CTAG 1 cut(s) 77
StuI AGGCCT 1 cut(s) 203
TaaI ACNGT 1 cut(s) 26
TasI AATT 1 cut(s) 180
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TseI GCWGC 1 cut(s) 139
XceI RCATGY 1 cut(s) 118
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.