Rmu_sc0022500.1_g000007
ERF Family

Belongs to the small GTPase superfamily. SAR1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022500.1
OG0005553
Physical Location & Seq
Forward (+)
27404 .. 27830
427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022500.1_g000007.1.cds

Sequence Viewer

Length: 345 bp
atgttcttgttcgactggttctacggcgtcctcgcatctctgggcctctggcagaaggaggccaagattctcttcctcggcctcgacaatgccggaaagaccacgctgcttcatatgttgaaggatgagagactagtgcagcaccagccgacgcagcatccgacgtcggaggaattgagcattgggaagattaagttcaaggctttcgatttggggggacaccagatcgctcgcagagtctggaaggattactatgcgaaggtcttcttttgcttccctccctcactattcgatttgctgaactcgtttgttttcgatttttggatggattattattacttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
Arf

Protein Analysis

114

Amino Acids

13.59

Weight (kDa)

6.9

Isoelectric Point (pI)

36.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 167
AcyI GRCGYC 2 cut(s) 27, 164
AgsI TTSAA 2 cut(s) 121, 199
AhlI ACTAGT 1 cut(s) 133
AjuI GAANNNNNNNTTGG 4 cut(s) 56, 88, 165, 197
Alw26I GTCTC 1 cut(s) 124
AlwNI CAGNNNCTG 1 cut(s) 240
AoxI GGCC 3 cut(s) 43, 60, 79
ApeKI GCWGC 3 cut(s) 106, 139, 154
Asp700I GAANNNNTTC 1 cut(s) 263
AspS9I GGNCC 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 256
BbvI GCAGC 3 cut(s) 93, 151, 166
BccI CCATC 1 cut(s) 319
BceAI ACGGC 1 cut(s) 40
BcoDI GTCTC 1 cut(s) 124
BcuI ACTAGT 1 cut(s) 133
BfaI CTAG 1 cut(s) 134
BisI GCNGC 3 cut(s) 107, 140, 155
BlsI GCNGC 3 cut(s) 108, 141, 156
BmgT120I GGNCC 1 cut(s) 43
BmsI GCATC 2 cut(s) 44, 166
BpiI GAAGAC 1 cut(s) 256
BsaHI GRCGYC 2 cut(s) 27, 164
BsaJI CCNNGG 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 76
BseGI GGATG 3 cut(s) 130, 157, 330
BseNI ACTGG 1 cut(s) 20
BseXI GCAGC 3 cut(s) 93, 151, 166
BsgI GTGCAG 1 cut(s) 158
BshFI GGCC 3 cut(s) 45, 62, 81
BsiSI CCGG 1 cut(s) 93
BslFI GGGAC 1 cut(s) 231
BsmAI GTCTC 1 cut(s) 124
BsmFI GGGAC 1 cut(s) 231
BsnI GGCC 3 cut(s) 45, 62, 81
Bsp143I GATC 1 cut(s) 225
BspANI GGCC 3 cut(s) 45, 62, 81
BsrI ACTGG 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 1 cut(s) 225
BssNI GRCGYC 2 cut(s) 27, 164
Bst6I CTCTTC 1 cut(s) 77
BstACI GRCGYC 2 cut(s) 27, 164
BstC8I GCNNGC 1 cut(s) 232
BstF5I GGATG 3 cut(s) 130, 157, 330
BstKTI GATC 1 cut(s) 228
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 1 cut(s) 225
BstMWI GCNNNNNNNGC 2 cut(s) 145, 154
BstV1I GCAGC 3 cut(s) 93, 151, 166
BstV2I GAAGAC 1 cut(s) 256
BsuRI GGCC 3 cut(s) 45, 62, 81
BtsCI GGATG 3 cut(s) 130, 157, 330
Cac8I GCNNGC 1 cut(s) 232
CaiI CAGNNNCTG 1 cut(s) 240
Cfr13I GGNCC 1 cut(s) 43
CseI GACGC 2 cut(s) 16, 160
CviJI RGCY 5 cut(s) 45, 62, 81, 148, 203
CviKI_1 RGCY 5 cut(s) 45, 62, 81, 148, 203
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
FaiI YATR 3 cut(s) 114, 116, 255
FalI AAGNNNNNCTT 4 cut(s) 56, 88, 251, 283
FaqI GGGAC 1 cut(s) 231
FauNDI CATATG 1 cut(s) 114
Fnu4HI GCNGC 3 cut(s) 107, 140, 155
FokI GGATG 3 cut(s) 137, 144, 337
Fsp4HI GCNGC 3 cut(s) 107, 140, 155
FspBI CTAG 1 cut(s) 134
GluI GCNGC 3 cut(s) 107, 140, 155
HaeIII GGCC 3 cut(s) 45, 62, 81
HapII CCGG 1 cut(s) 93
HgaI GACGC 2 cut(s) 16, 160
Hin1I GRCGYC 2 cut(s) 27, 164
HinfI GANTC 2 cut(s) 67, 237
HpaII CCGG 1 cut(s) 93
Hpy188I TCNGA 2 cut(s) 162, 169
Hpy188III TCNNGA 1 cut(s) 241
Hpy99I CGWCG 3 cut(s) 154, 166, 169
HpyAV CCTTC 4 cut(s) 49, 115, 238, 253
HpyCH4IV ACGT 1 cut(s) 164
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 154
HpySE526I ACGT 1 cut(s) 164
Hsp92I GRCGYC 2 cut(s) 27, 164
Kzo9I GATC 1 cut(s) 225
LpnPI CCDG 6 cut(s) 26, 34, 106, 158, 226, 236
Lsp1109I GCAGC 3 cut(s) 93, 151, 166
LweI GCATC 2 cut(s) 44, 166
MaeI CTAG 1 cut(s) 134
MaeII ACGT 1 cut(s) 164
MalI GATC 1 cut(s) 227
MboI GATC 1 cut(s) 225
MboII GAAGA 3 cut(s) 64, 199, 256
MluCI AATT 1 cut(s) 173
MlyI GAGTC 1 cut(s) 246
MmeI TCCRAC 2 cut(s) 147, 185
MnlI CCTC 8 cut(s) 41, 52, 56, 86, 92, 163, 288, 292
MroXI GAANNNNTTC 1 cut(s) 263
MseI TTAA 1 cut(s) 192
MspI CCGG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 145, 154
NdeI CATATG 1 cut(s) 114
NdeII GATC 1 cut(s) 225
NmeAIII GCCGAG 1 cut(s) 57
PcsI WCGNNNNNNNCGW 1 cut(s) 158
PdmI GAANNNNTTC 1 cut(s) 263
PfeI GAWTC 1 cut(s) 67
PkrI GCNGC 3 cut(s) 108, 141, 156
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
PspPI GGNCC 1 cut(s) 43
PstNI CAGNNNCTG 1 cut(s) 240
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 3 cut(s) 107, 140, 155
Sau3AI GATC 1 cut(s) 225
Sau96I GGNCC 1 cut(s) 43
SchI GAGTC 1 cut(s) 246
SetI ASST 2 cut(s) 167, 264
SfaNI GCATC 2 cut(s) 44, 166
SpeI ACTAGT 1 cut(s) 133
Sse9I AATT 1 cut(s) 173
SspMI CTAG 1 cut(s) 134
TaiI ACGT 1 cut(s) 167
TaqI TCGA 5 cut(s) 12, 84, 207, 291, 315
TasI AATT 1 cut(s) 173
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TseI GCWGC 3 cut(s) 106, 139, 154
TspDTI ATGAA 1 cut(s) 101
XmnI GAANNNNTTC 1 cut(s) 263
XspI CTAG 1 cut(s) 134
ZraI GACGTC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.