Rh7DG378300
ERF Family

Belongs to the small GTPase superfamily. SAR1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0005553
Physical Location & Seq
Forward (+)
51380203 .. 51381256
1054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG378300.1

Sequence Viewer

Length: 243 bp
ATGTTTCTGTTAGACTGGTTGTACAGTGTGCTCGCTTCCCTCGGTCTGTGGCAGAAGGAGGCCAAGATCTTATTCCTAGTGCTCAATAATGCTGGCAAGACCACCTTGCTTCACATGCTCAAAGATGAGAGGCTGGTGCAGCATCAACCTACGCAATATCCCACATTCGAGGAGTTGAGAATTGGCAAAATCAAGTTCAAGGCCTTTGATTTGGGAGGTTATCAGATTGCTTGCAGGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
Arf

Protein Analysis

80

Amino Acids

9.31

Weight (kDa)

9.21

Isoelectric Point (pI)

26.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 8 - 76 4.4e-21 ADP-ribosylation factor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 23
AgsI TTSAA 1 cut(s) 199
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
Alw21I GWGCWC 2 cut(s) 33, 84
AoxI GGCC 2 cut(s) 60, 201
ApeKI GCWGC 1 cut(s) 139
Bbv12I GWGCWC 2 cut(s) 33, 84
BbvI GCAGC 1 cut(s) 151
BfaI CTAG 2 cut(s) 77, 241
BglII AGATCT 1 cut(s) 66
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
BmsI GCATC 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 40
Bse1I ACTGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 40
BseNI ACTGG 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 151
BsgI GTGCAG 1 cut(s) 158
BshFI GGCC 2 cut(s) 62, 203
BsiHKAI GWGCWC 2 cut(s) 33, 84
BsnI GGCC 2 cut(s) 62, 203
Bsp1286I GDGCHC 2 cut(s) 33, 84
Bsp1407I TGTACA 1 cut(s) 21
Bsp143I GATC 1 cut(s) 66
BspANI GGCC 2 cut(s) 62, 203
BsrGI TGTACA 1 cut(s) 21
BsrI ACTGG 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 40
BssMI GATC 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 26
BstAUI TGTACA 1 cut(s) 21
BstC8I GCNNGC 3 cut(s) 33, 94, 232
BstKTI GATC 1 cut(s) 69
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 2 cut(s) 115, 139
BstNSI RCATGY 1 cut(s) 118
BstV1I GCAGC 1 cut(s) 151
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BsuRI GGCC 2 cut(s) 62, 203
BtsIMutI CAGTG 1 cut(s) 31
Cac8I GCNNGC 3 cut(s) 33, 94, 232
Csp6I GTAC 1 cut(s) 22
CviAII CATG 1 cut(s) 115
CviJI RGCY 3 cut(s) 62, 133, 203
CviKI_1 RGCY 3 cut(s) 62, 133, 203
CviQI GTAC 1 cut(s) 22
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
Eco147I AGGCCT 1 cut(s) 203
FaeI CATG 1 cut(s) 118
FaiI YATR 1 cut(s) 116
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FatI CATG 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 140
FspBI CTAG 2 cut(s) 77, 241
GluI GCNGC 1 cut(s) 140
HaeIII GGCC 2 cut(s) 62, 203
Hin1II CATG 1 cut(s) 118
Hpy188I TCNGA 1 cut(s) 225
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4V TGCA 2 cut(s) 139, 234
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 139
Hsp92II CATG 1 cut(s) 118
Kzo9I GATC 1 cut(s) 66
LpnPI CCDG 3 cut(s) 78, 119, 220
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 1 cut(s) 151
MaeI CTAG 2 cut(s) 77, 241
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MflI RGATCY 1 cut(s) 66
MhlI GDGCHC 2 cut(s) 33, 84
MluCI AATT 1 cut(s) 180
MnlI CCTC 5 cut(s) 50, 52, 123, 163, 209
MwoI GCNNNNNNNGC 2 cut(s) 115, 139
NdeII GATC 1 cut(s) 66
NlaIII CATG 1 cut(s) 118
NspI RCATGY 1 cut(s) 118
PceI AGGCCT 1 cut(s) 203
PkrI GCNGC 1 cut(s) 141
PsuI RGATCY 1 cut(s) 66
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
SatI GCNGC 1 cut(s) 140
Sau3AI GATC 1 cut(s) 66
SduI GDGCHC 2 cut(s) 33, 84
SetI ASST 3 cut(s) 107, 151, 220
SfaNI GCATC 1 cut(s) 151
Sse9I AATT 1 cut(s) 180
SseBI AGGCCT 1 cut(s) 203
SspMI CTAG 2 cut(s) 77, 241
StuI AGGCCT 1 cut(s) 203
TaaI ACNGT 1 cut(s) 26
TaqI TCGA 1 cut(s) 168
TaqII GACCGA 1 cut(s) 32
TasI AATT 1 cut(s) 180
TatI WGTACW 1 cut(s) 21
TscAI CASTG 1 cut(s) 31
TseI GCWGC 1 cut(s) 139
TspRI CASTG 1 cut(s) 31
XceI RCATGY 1 cut(s) 118
XspI CTAG 2 cut(s) 77, 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.