Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033404.1

Orthogroup ID

OG0005553

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 346

Gene Structure 346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033404.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 241 bp

tctggcatccctagggctgtggcagaaggaagctaagatcttgttcttggggctcgataatgccgggaagaccaccttgctccacatgctcaaagatgagagattagttcagcaccaaccgactcagtacccgacctccgaggagttgagtatagggaagattaagttcaaggcttttgatttgggtggccatcagatcgctcgcagagtctggaaggattattacgccaaggttttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

79

Amino Acids

9.1

Weight (kDa)

9.52

Isoelectric Point (pI)

29.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005553)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g00030 pycom15g34450 pycom16g13280
rosa_chinensis	RchiOBHm_Chr7g0225741 RchiOBHm_Chr7g0225771 RchiOBHm_Chr7g0225801 RchiOBHm_Chr7g0225921
rosa_laevigata	RLG00000006460 RLG00000033226 RLG00000033535 RLG00000036912
rosa_multiflora	Rmu_co8290005.1_g000001 Rmu_sc0000487.1_g000032 Rmu_sc0002603.1_g000001 Rmu_sc0022500.1_g000007 Rmu_sc0033404.1_g000001
rosa_rugosa	Rorug07G0052500
rosa_samantha	Rh1AG084700 Rh1DG089100 Rh2AG444900 Rh2CG431700 Rh4CG008300 Rh5CG358500 Rh7BG179300 Rh7CG390000 Rh7DG378100 Rh7DG378300
rosa_wichuraiana	Rw2G036330 Rw7G031910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	188
AfaI	GTAC	1 cut(s)	129
AgsI	TTSAA	1 cut(s)	170
AluBI	AGCT	1 cut(s)	33
AluI	AGCT	1 cut(s)	33
AlwNI	CAGNNNCTG	1 cut(s)	211
AoxI	GGCC	1 cut(s)	188
AspA2I	CCTAGG	1 cut(s)	11
AsuC2I	CCSGG	1 cut(s)	65
AvrII	CCTAGG	1 cut(s)	11
BalI	TGGCCA	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	55
BarI	GAAGNNNNNNTAC	2 cut(s)	207, 239
BbsI	GAAGAC	1 cut(s)	75
BccI	CCATC	1 cut(s)	199
BcnI	CCSGG	1 cut(s)	65
BfaI	CTAG	1 cut(s)	12
BglII	AGATCT	1 cut(s)	37
BlnI	CCTAGG	1 cut(s)	11
Bme1390I	CCNGG	1 cut(s)	65
BmrFI	CCNGG	1 cut(s)	65
BmsI	GCATC	1 cut(s)	15
BpiI	GAAGAC	1 cut(s)	75
BpuMI	CCSGG	1 cut(s)	65
BsaJI	CCNNGG	3 cut(s)	11, 139, 229
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
BseDI	CCNNGG	3 cut(s)	11, 139, 229
BseGI	GGATG	1 cut(s)	6
BseMII	CTCAG	1 cut(s)	138
BseRI	GAGGAG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	64
BsnI	GGCC	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp143I	GATC	2 cut(s)	37, 196
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	1 cut(s)	137
BssECI	CCNNGG	3 cut(s)	11, 139, 229
BssMI	GATC	2 cut(s)	37, 196
BssT1I	CCWWGG	2 cut(s)	11, 229
BstC8I	GCNNGC	1 cut(s)	203
BstDEI	CTNAG	2 cut(s)	34, 124
BstF5I	GGATG	1 cut(s)	6
BstKTI	GATC	2 cut(s)	40, 199
BstMBI	GATC	2 cut(s)	37, 196
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNSI	RCATGY	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	63
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	6
Cac8I	GCNNGC	1 cut(s)	203
CaiI	CAGNNNCTG	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	5 cut(s)	17, 33, 53, 174, 190
CviKI_1	RGCY	5 cut(s)	17, 33, 53, 174, 190
CviQI	GTAC	1 cut(s)	128
DdeI	CTNAG	2 cut(s)	34, 124
DpnI	GATC	2 cut(s)	39, 198
DpnII	GATC	2 cut(s)	37, 196
EaeI	YGGCCR	1 cut(s)	188
Eco130I	CCWWGG	2 cut(s)	11, 229
Eco24I	GRGCYC	1 cut(s)	55
EcoT14I	CCWWGG	2 cut(s)	11, 229
EcoT38I	GRGCYC	1 cut(s)	55
ErhI	CCWWGG	2 cut(s)	11, 229
FaeI	CATG	1 cut(s)	89
FaiI	YATR	2 cut(s)	87, 153
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FatI	CATG	1 cut(s)	85
FriOI	GRGCYC	1 cut(s)	55
FspBI	CTAG	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	1 cut(s)	64
Hin1II	CATG	1 cut(s)	89
HinfI	GANTC	2 cut(s)	122, 208
HpaII	CCGG	1 cut(s)	64
Hpy188I	TCNGA	2 cut(s)	140, 196
Hpy188III	TCNNGA	1 cut(s)	212
HpyAV	CCTTC	2 cut(s)	20, 209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	2 cut(s)	34, 124
Hsp92II	CATG	1 cut(s)	89
Kzo9I	GATC	2 cut(s)	37, 196
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	2 cut(s)	77, 197
LweI	GCATC	1 cut(s)	15
MaeI	CTAG	1 cut(s)	12
MalI	GATC	2 cut(s)	39, 198
MboI	GATC	2 cut(s)	37, 196
MboII	GAAGA	2 cut(s)	80, 170
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	1 cut(s)	55
MlsI	TGGCCA	1 cut(s)	190
MluNI	TGGCCA	1 cut(s)	190
MlyI	GAGTC	2 cut(s)	116, 217
MnlI	CCTC	2 cut(s)	134, 146
Mox20I	TGGCCA	1 cut(s)	190
MscI	TGGCCA	1 cut(s)	190
MseI	TTAA	2 cut(s)	163, 239
Msp20I	TGGCCA	1 cut(s)	190
MspI	CCGG	1 cut(s)	64
MspR9I	CCNGG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	86
NciI	CCSGG	1 cut(s)	65
NdeII	GATC	2 cut(s)	37, 196
NlaIII	CATG	1 cut(s)	89
NspI	RCATGY	1 cut(s)	89
PleI	GAGTC	2 cut(s)	116, 216
PpsI	GAGTC	2 cut(s)	116, 216
PstNI	CAGNNNCTG	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	37
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
SaqAI	TTAA	2 cut(s)	163, 239
Sau3AI	GATC	2 cut(s)	37, 196
SchI	GAGTC	2 cut(s)	116, 217
ScrFI	CCNGG	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	55
SetI	ASST	4 cut(s)	35, 78, 138, 235
SfaNI	GCATC	1 cut(s)	15
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	63
StyI	CCWWGG	2 cut(s)	11, 229
TaqI	TCGA	1 cut(s)	55
Tru1I	TTAA	2 cut(s)	163, 239
Tru9I	TTAA	2 cut(s)	163, 239
XceI	RCATGY	1 cut(s)	89
XmaJI	CCTAGG	1 cut(s)	11
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.