Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000487.1

Orthogroup ID

OG0005553

Physical Location & Seq

Genomic Coordinates Reverse (-)

142505 .. 143151

Gene Structure 647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000487.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

atgtttctcttcgactggttctacggcgtgctcgcttccctcggtctatggcagaaggaggccaagatcttgttcctagggctcgataatgctggcaagaccaccttgcttcacatgctcaaagatgacgggctggtgcagcatcaacctacgcaatatcccacatccgaggagttgagtattggcaaaattaagttcaaggcctttgatttgggaggtcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

74

Amino Acids

8.37

Weight (kDa)

6.24

Isoelectric Point (pI)

24.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005553)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g00030 pycom15g34450 pycom16g13280
rosa_chinensis	RchiOBHm_Chr7g0225741 RchiOBHm_Chr7g0225771 RchiOBHm_Chr7g0225801 RchiOBHm_Chr7g0225921
rosa_laevigata	RLG00000006460 RLG00000033226 RLG00000033535 RLG00000036912
rosa_multiflora	Rmu_co8290005.1_g000001 Rmu_sc0000487.1_g000032 Rmu_sc0002603.1_g000001 Rmu_sc0022500.1_g000007 Rmu_sc0033404.1_g000001
rosa_rugosa	Rorug07G0052500
rosa_samantha	Rh1AG084700 Rh1DG089100 Rh2AG444900 Rh2CG431700 Rh4CG008300 Rh5CG358500 Rh7BG179300 Rh7CG390000 Rh7DG378100 Rh7DG378300
rosa_wichuraiana	Rw2G036330 Rw7G031910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	199
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
Alw21I	GWGCWC	1 cut(s)	33
AoxI	GGCC	2 cut(s)	60, 201
ApeKI	GCWGC	1 cut(s)	139
AspA2I	CCTAGG	1 cut(s)	76
AvrII	CCTAGG	1 cut(s)	76
BanII	GRGCYC	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	151
BceAI	ACGGC	1 cut(s)	40
BfaI	CTAG	1 cut(s)	77
BglII	AGATCT	1 cut(s)	66
BisI	GCNGC	1 cut(s)	140
BlnI	CCTAGG	1 cut(s)	76
BlsI	GCNGC	1 cut(s)	141
BmsI	GCATC	1 cut(s)	151
BsaJI	CCNNGG	3 cut(s)	40, 76, 168
Bse1I	ACTGG	1 cut(s)	20
BseDI	CCNNGG	3 cut(s)	40, 76, 168
BseGI	GGATG	1 cut(s)	164
BseNI	ACTGG	1 cut(s)	20
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	151
BsgI	GTGCAG	1 cut(s)	158
BshFI	GGCC	2 cut(s)	62, 203
BsiHKAI	GWGCWC	1 cut(s)	33
BsnI	GGCC	2 cut(s)	62, 203
Bsp1286I	GDGCHC	2 cut(s)	33, 84
Bsp143I	GATC	1 cut(s)	66
BspANI	GGCC	2 cut(s)	62, 203
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	3 cut(s)	40, 76, 168
BssMI	GATC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	14
BstC8I	GCNNGC	3 cut(s)	29, 33, 94
BstF5I	GGATG	1 cut(s)	164
BstKTI	GATC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 139
BstNSI	RCATGY	1 cut(s)	118
BstV1I	GCAGC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	66
BstYI	RGATCY	1 cut(s)	66
BsuRI	GGCC	2 cut(s)	62, 203
BtsCI	GGATG	1 cut(s)	164
Cac8I	GCNNGC	3 cut(s)	29, 33, 94
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	4 cut(s)	62, 82, 133, 203
CviKI_1	RGCY	4 cut(s)	62, 82, 133, 203
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	76
Eco147I	AGGCCT	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	1 cut(s)	118
FaiI	YATR	2 cut(s)	49, 116
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FatI	CATG	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	140
FokI	GGATG	1 cut(s)	151
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	1 cut(s)	140
FspBI	CTAG	1 cut(s)	77
GluI	GCNGC	1 cut(s)	140
HaeIII	GGCC	2 cut(s)	62, 203
Hin1II	CATG	1 cut(s)	118
Hpy188I	TCNGA	1 cut(s)	169
HpyAV	CCTTC	1 cut(s)	49
HpyCH4V	TGCA	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 139
Hsp92II	CATG	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	66
LpnPI	CCDG	2 cut(s)	78, 119
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	1 cut(s)	77
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MflI	RGATCY	1 cut(s)	66
MhlI	GDGCHC	2 cut(s)	33, 84
MluCI	AATT	1 cut(s)	189
MnlI	CCTC	4 cut(s)	50, 52, 163, 209
MseI	TTAA	1 cut(s)	192
MwoI	GCNNNNNNNGC	2 cut(s)	115, 139
NdeII	GATC	1 cut(s)	66
NlaIII	CATG	1 cut(s)	118
NspI	RCATGY	1 cut(s)	118
PceI	AGGCCT	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	141
PsuI	RGATCY	1 cut(s)	66
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	1 cut(s)	140
Sau3AI	GATC	1 cut(s)	66
SduI	GDGCHC	2 cut(s)	33, 84
SetI	ASST	3 cut(s)	107, 151, 220
SfaNI	GCATC	1 cut(s)	151
Sse9I	AATT	1 cut(s)	189
SseBI	AGGCCT	1 cut(s)	203
SspMI	CTAG	1 cut(s)	77
StuI	AGGCCT	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	76
TaqI	TCGA	2 cut(s)	12, 84
TaqII	GACCGA	1 cut(s)	32
TasI	AATT	1 cut(s)	189
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TseI	GCWGC	1 cut(s)	139
XceI	RCATGY	1 cut(s)	118
XmaJI	CCTAGG	1 cut(s)	76
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.