Rh1AG084700
ERF Family

Belongs to the small GTPase superfamily. SAR1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0005553
Physical Location & Seq
Forward (+)
14490945 .. 14491706
762 bp
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UTR
Exon/CDS
Intron
Rh1AG084700.1

Sequence Viewer

Length: 282 bp
ATGCTTGCTTCCCTCGGTCTGTGGCAGAAGGAGGCCAAGATCTTATTCCTAGCGCTCAATAATGCCGGCAAGACCACCTTGCTTCACATGCTCAAAGATGAGAGGCTGGTGCAGCATCAACCTACACAATATCCCACATCTGAGGAGTTGAGAATTGGCAAAATCAAGTTCAAGGCCTTTGATTTGGGAGGTCATCAGATTGCTTGCAGGGTCTGGAAGGATTACTACGTAAAAGTAGATGATGTGGTGTACCCTGTGGATGCCTACAATGGTTTTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
Arf

Protein Analysis

93

Amino Acids

10.73

Weight (kDa)

9.04

Isoelectric Point (pI)

20.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 1 - 89 2.5e-30 ADP-ribosylation factor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 251
AfeI AGCGCT 1 cut(s) 54
AgsI TTSAA 1 cut(s) 172
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
AlwNI CAGNNNCTG 1 cut(s) 213
Aor51HI AGCGCT 1 cut(s) 54
AoxI GGCC 2 cut(s) 33, 174
ApeKI GCWGC 1 cut(s) 112
AspLEI GCGC 1 cut(s) 55
BarI GAAGNNNNNNTAC 2 cut(s) 209, 241
BbvI GCAGC 1 cut(s) 124
BfaI CTAG 1 cut(s) 50
BfoI RGCGCY 1 cut(s) 56
BglII AGATCT 1 cut(s) 39
BisI GCNGC 1 cut(s) 113
BlsI GCNGC 1 cut(s) 114
BmsI GCATC 2 cut(s) 124, 250
BsaAI YACGTR 1 cut(s) 229
BsaJI CCNNGG 1 cut(s) 13
Bse118I RCCGGY 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 13
BseGI GGATG 1 cut(s) 265
BseMII CTCAG 1 cut(s) 132
BseRI GAGGAG 1 cut(s) 158
BseXI GCAGC 1 cut(s) 124
BsgI GTGCAG 1 cut(s) 131
BshFI GGCC 2 cut(s) 35, 176
BsiSI CCGG 1 cut(s) 66
BsnI GGCC 2 cut(s) 35, 176
Bsp143I GATC 1 cut(s) 39
BspANI GGCC 2 cut(s) 35, 176
BspCNI CTCAG 1 cut(s) 133
BsrFI RCCGGY 1 cut(s) 65
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 1 cut(s) 39
BstBAI YACGTR 1 cut(s) 229
BstC8I GCNNGC 3 cut(s) 6, 67, 205
BstDEI CTNAG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 265
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 1 cut(s) 42
BstMBI GATC 1 cut(s) 39
BstMWI GCNNNNNNNGC 2 cut(s) 88, 112
BstNSI RCATGY 1 cut(s) 91
BstSNI TACGTA 1 cut(s) 229
BstV1I GCAGC 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
BsuRI GGCC 2 cut(s) 35, 176
BtsCI GGATG 1 cut(s) 265
Cac8I GCNNGC 3 cut(s) 6, 67, 205
CaiI CAGNNNCTG 1 cut(s) 213
CfoI GCGC 1 cut(s) 55
Cfr10I RCCGGY 1 cut(s) 65
Csp6I GTAC 1 cut(s) 250
CviAII CATG 1 cut(s) 88
CviJI RGCY 3 cut(s) 35, 106, 176
CviKI_1 RGCY 3 cut(s) 35, 106, 176
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 1 cut(s) 141
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
Eco105I TACGTA 1 cut(s) 229
Eco147I AGGCCT 1 cut(s) 176
Eco47III AGCGCT 1 cut(s) 54
FaeI CATG 1 cut(s) 91
FaiI YATR 1 cut(s) 89
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FatI CATG 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 113
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 113
FspBI CTAG 1 cut(s) 50
GlaI GCGC 1 cut(s) 54
GluI GCNGC 1 cut(s) 113
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 2 cut(s) 35, 176
HapII CCGG 1 cut(s) 66
HhaI GCGC 1 cut(s) 55
Hin1II CATG 1 cut(s) 91
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HpaII CCGG 1 cut(s) 66
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 2 cut(s) 142, 198
Hpy188III TCNNGA 1 cut(s) 214
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 2 cut(s) 22, 211
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 2 cut(s) 112, 207
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 112
HpyF3I CTNAG 1 cut(s) 141
HpySE526I ACGT 1 cut(s) 228
Hsp92II CATG 1 cut(s) 91
HspAI GCGC 1 cut(s) 53
KroI GCCGGC 1 cut(s) 65
KroNI GCCGGC 1 cut(s) 67
Kzo9I GATC 1 cut(s) 39
LpnPI CCDG 5 cut(s) 79, 92, 193, 199, 267
Lsp1109I GCAGC 1 cut(s) 124
LweI GCATC 2 cut(s) 124, 250
MaeI CTAG 1 cut(s) 50
MaeII ACGT 1 cut(s) 228
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MflI RGATCY 1 cut(s) 39
MluCI AATT 1 cut(s) 153
MnlI CCTC 5 cut(s) 23, 25, 96, 136, 182
MroNI GCCGGC 1 cut(s) 65
MseI TTAA 1 cut(s) 276
MspI CCGG 1 cut(s) 66
MwoI GCNNNNNNNGC 2 cut(s) 88, 112
NaeI GCCGGC 1 cut(s) 67
NdeII GATC 1 cut(s) 39
NgoMIV GCCGGC 1 cut(s) 65
NlaIII CATG 1 cut(s) 91
NspI RCATGY 1 cut(s) 91
PceI AGGCCT 1 cut(s) 176
PdiI GCCGGC 1 cut(s) 67
PkrI GCNGC 1 cut(s) 114
Ppu21I YACGTR 1 cut(s) 229
PstNI CAGNNNCTG 1 cut(s) 213
PsuI RGATCY 1 cut(s) 39
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 1 cut(s) 113
Sau3AI GATC 1 cut(s) 39
SetI ASST 4 cut(s) 80, 124, 193, 231
SfaNI GCATC 2 cut(s) 124, 250
SnaBI TACGTA 1 cut(s) 229
Sse9I AATT 1 cut(s) 153
SseBI AGGCCT 1 cut(s) 176
SspMI CTAG 1 cut(s) 50
StuI AGGCCT 1 cut(s) 176
TaiI ACGT 1 cut(s) 231
TaqII GACCGA 1 cut(s) 5
TasI AATT 1 cut(s) 153
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TseI GCWGC 1 cut(s) 112
XceI RCATGY 1 cut(s) 91
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.