Rh1DG089100
ERF Family

Belongs to the small GTPase superfamily. SAR1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0005553
Physical Location & Seq
Forward (+)
16621704 .. 16622485
782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG089100.1

Sequence Viewer

Length: 309 bp
ATGTTTTTGTTCAACTGGTTGTACGGCGTGCTTGCTTCCCTCGGTCTGTGGCAGAAGGAGGCCAAGATCTTATTCCTAGCGCTCAATAATGCCGGCAAGACCACCTTGCTTCACGTGCTCAAAGATGAGAGGCTGGTGCAGCATCAACCTACACAATATCCCACATCTGAGGAGTTGAGAATTGGCAAAATCAAGTTCAAGGCCTTTGATTTGGGAGGTCATCAGATTGCTTGCAGGGTCTGGAAGGATTACTACGTAAAAGTAGATGATGTGGTGTACCCTGTGGATGCCTACGATGGTTTTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
Arf

Protein Analysis

102

Amino Acids

11.84

Weight (kDa)

8.67

Isoelectric Point (pI)

22.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 9 - 99 3.4e-30 ADP-ribosylation factor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcvI CACGTG 1 cut(s) 115
AfaI GTAC 2 cut(s) 23, 278
AfeI AGCGCT 1 cut(s) 81
AgsI TTSAA 2 cut(s) 13, 199
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
Alw21I GWGCWC 1 cut(s) 120
AlwNI CAGNNNCTG 1 cut(s) 240
Aor51HI AGCGCT 1 cut(s) 81
AoxI GGCC 2 cut(s) 60, 201
ApeKI GCWGC 1 cut(s) 139
AspLEI GCGC 1 cut(s) 82
BarI GAAGNNNNNNTAC 2 cut(s) 236, 268
BbrPI CACGTG 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 1 cut(s) 151
BccI CCATC 1 cut(s) 290
BceAI ACGGC 1 cut(s) 40
BfaI CTAG 1 cut(s) 77
BfoI RGCGCY 1 cut(s) 83
BglII AGATCT 1 cut(s) 66
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
BmsI GCATC 2 cut(s) 151, 277
BsaAI YACGTR 2 cut(s) 115, 256
BsaJI CCNNGG 1 cut(s) 40
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 40
BseGI GGATG 1 cut(s) 292
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 151
BsgI GTGCAG 1 cut(s) 158
BshFI GGCC 2 cut(s) 62, 203
BsiHKAI GWGCWC 1 cut(s) 120
BsiSI CCGG 1 cut(s) 93
BsnI GGCC 2 cut(s) 62, 203
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 1 cut(s) 66
BspANI GGCC 2 cut(s) 62, 203
BspCNI CTCAG 1 cut(s) 160
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 1 cut(s) 20
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 40
BssMI GATC 1 cut(s) 66
BstBAI YACGTR 2 cut(s) 115, 256
BstC8I GCNNGC 4 cut(s) 29, 33, 94, 232
BstDEI CTNAG 1 cut(s) 168
BstF5I GGATG 1 cut(s) 292
BstH2I RGCGCY 1 cut(s) 83
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 1 cut(s) 69
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 2 cut(s) 115, 139
BstSNI TACGTA 1 cut(s) 256
BstV1I GCAGC 1 cut(s) 151
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BsuRI GGCC 2 cut(s) 62, 203
BtsCI GGATG 1 cut(s) 292
Cac8I GCNNGC 4 cut(s) 29, 33, 94, 232
CaiI CAGNNNCTG 1 cut(s) 240
CfoI GCGC 1 cut(s) 82
Cfr10I RCCGGY 1 cut(s) 92
Csp6I GTAC 2 cut(s) 22, 277
CviJI RGCY 3 cut(s) 62, 133, 203
CviKI_1 RGCY 3 cut(s) 62, 133, 203
CviQI GTAC 2 cut(s) 22, 277
DdeI CTNAG 1 cut(s) 168
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
Eco105I TACGTA 1 cut(s) 256
Eco147I AGGCCT 1 cut(s) 203
Eco47III AGCGCT 1 cut(s) 81
Eco72I CACGTG 1 cut(s) 115
FalI AAGNNNNNCTT 2 cut(s) 89, 121
Fnu4HI GCNGC 1 cut(s) 140
FokI GGATG 1 cut(s) 299
Fsp4HI GCNGC 1 cut(s) 140
FspBI CTAG 1 cut(s) 77
GlaI GCGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 140
HaeII RGCGCY 1 cut(s) 83
HaeIII GGCC 2 cut(s) 62, 203
HapII CCGG 1 cut(s) 93
HhaI GCGC 1 cut(s) 82
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HpaII CCGG 1 cut(s) 93
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 2 cut(s) 169, 225
Hpy188III TCNNGA 1 cut(s) 241
Hpy8I GTNNAC 1 cut(s) 277
HpyAV CCTTC 2 cut(s) 49, 238
HpyCH4IV ACGT 2 cut(s) 114, 255
HpyCH4V TGCA 2 cut(s) 139, 234
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 139
HpyF3I CTNAG 1 cut(s) 168
HpySE526I ACGT 2 cut(s) 114, 255
HspAI GCGC 1 cut(s) 80
KroI GCCGGC 1 cut(s) 92
KroNI GCCGGC 1 cut(s) 94
Kzo9I GATC 1 cut(s) 66
LpnPI CCDG 5 cut(s) 106, 119, 220, 226, 294
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 2 cut(s) 151, 277
MaeI CTAG 1 cut(s) 77
MaeII ACGT 2 cut(s) 114, 255
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MflI RGATCY 1 cut(s) 66
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 1 cut(s) 180
MnlI CCTC 5 cut(s) 50, 52, 123, 163, 209
MroNI GCCGGC 1 cut(s) 92
MseI TTAA 1 cut(s) 303
MspI CCGG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 115, 139
NaeI GCCGGC 1 cut(s) 94
NdeII GATC 1 cut(s) 66
NgoMIV GCCGGC 1 cut(s) 92
PceI AGGCCT 1 cut(s) 203
PdiI GCCGGC 1 cut(s) 94
PkrI GCNGC 1 cut(s) 141
PmaCI CACGTG 1 cut(s) 115
PmlI CACGTG 1 cut(s) 115
Ppu21I YACGTR 2 cut(s) 115, 256
PspCI CACGTG 1 cut(s) 115
PstNI CAGNNNCTG 1 cut(s) 240
PsuI RGATCY 1 cut(s) 66
RsaI GTAC 2 cut(s) 23, 278
RsaNI GTAC 2 cut(s) 22, 277
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 1 cut(s) 140
Sau3AI GATC 1 cut(s) 66
SduI GDGCHC 1 cut(s) 120
SetI ASST 5 cut(s) 107, 117, 151, 220, 258
SfaNI GCATC 2 cut(s) 151, 277
SnaBI TACGTA 1 cut(s) 256
Sse9I AATT 1 cut(s) 180
SseBI AGGCCT 1 cut(s) 203
SspMI CTAG 1 cut(s) 77
StuI AGGCCT 1 cut(s) 203
TaiI ACGT 2 cut(s) 117, 258
TaqII GACCGA 1 cut(s) 32
TasI AATT 1 cut(s) 180
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TseI GCWGC 1 cut(s) 139
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.