RLG00000033535
ERF Family

Belongs to the small GTPase superfamily. SAR1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0005553
Physical Location & Seq
Forward (+)
28661566 .. 28662416
851 bp
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UTR
Exon/CDS
Intron
RLM00000033535

Sequence Viewer

Length: 372 bp
ATGTTTCTGTTCGACTGGTTCTACGACGTGCTCGCTTCCCTCAGTCTGTGGCAGAAGGAGGCCAAGATCTTATTCCTAGCGCTCGATAATGCCGGCAAGACCACCTTGCTTCACATGCTCAAAGATGAGAGGTTGGTGCAGCATCAACCTACGCAATATCCCACATCCGAGGAGTTGAGTATTGACAAAATCAAGTTCAAGGCCTTTGATTTGGGAGGTCATCAGACTACTCTTAGGGTCTGGAAGGATTACTACGCAAAGGTAGATGCTGTGGTGTACCCTGTGGATGCCTACGATGGTTTTAAGTGGCTCTCTCAATACATTACTGTGAATTTGTTGTTCAAAATTCTGAGCAGTGCCTTGTGTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
Arf

Protein Analysis

124

Amino Acids

14.32

Weight (kDa)

6.26

Isoelectric Point (pI)

28.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 7 - 99 2.5e-33 ADP-ribosylation factor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 331, 345
AfaI GTAC 1 cut(s) 278
AfeI AGCGCT 1 cut(s) 81
AgsI TTSAA 2 cut(s) 199, 343
AjiI CACGTC 1 cut(s) 28
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
Alw21I GWGCWC 1 cut(s) 33
Aor51HI AGCGCT 1 cut(s) 81
AoxI GGCC 2 cut(s) 60, 201
ApeKI GCWGC 1 cut(s) 139
ApoI RAATTY 2 cut(s) 331, 345
AspLEI GCGC 1 cut(s) 82
BarI GAAGNNNNNNTAC 2 cut(s) 236, 268
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 151
BccI CCATC 1 cut(s) 290
BfaI CTAG 1 cut(s) 77
BfoI RGCGCY 1 cut(s) 83
BglII AGATCT 1 cut(s) 66
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
BmgBI CACGTC 1 cut(s) 28
BmsI GCATC 3 cut(s) 151, 256, 277
BsaJI CCNNGG 1 cut(s) 168
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 2 cut(s) 164, 292
BseMII CTCAG 2 cut(s) 55, 341
BseNI ACTGG 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 151
BsgI GTGCAG 1 cut(s) 158
BshFI GGCC 2 cut(s) 62, 203
BsiHKAI GWGCWC 1 cut(s) 33
BsiSI CCGG 1 cut(s) 93
BsnI GGCC 2 cut(s) 62, 203
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 1 cut(s) 66
BspANI GGCC 2 cut(s) 62, 203
BspCNI CTCAG 2 cut(s) 54, 342
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 1 cut(s) 20
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 328
BstC8I GCNNGC 2 cut(s) 33, 94
BstDEI CTNAG 3 cut(s) 41, 233, 350
BstF5I GGATG 2 cut(s) 164, 292
BstH2I RGCGCY 1 cut(s) 83
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 1 cut(s) 69
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 1 cut(s) 115
BstNSI RCATGY 1 cut(s) 118
BstV1I GCAGC 1 cut(s) 151
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BsuRI GGCC 2 cut(s) 62, 203
BtrI CACGTC 1 cut(s) 28
BtsCI GGATG 2 cut(s) 164, 292
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 1 cut(s) 361
Cac8I GCNNGC 2 cut(s) 33, 94
CfoI GCGC 1 cut(s) 82
Cfr10I RCCGGY 1 cut(s) 92
Csp6I GTAC 1 cut(s) 277
CviAII CATG 1 cut(s) 115
CviJI RGCY 3 cut(s) 62, 203, 310
CviKI_1 RGCY 3 cut(s) 62, 203, 310
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 3 cut(s) 41, 233, 350
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
Eco147I AGGCCT 1 cut(s) 203
Eco47III AGCGCT 1 cut(s) 81
FaeI CATG 1 cut(s) 118
FaiI YATR 1 cut(s) 116
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FatI CATG 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 140
FokI GGATG 2 cut(s) 151, 299
Fsp4HI GCNGC 1 cut(s) 140
FspBI CTAG 1 cut(s) 77
GlaI GCGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 140
HaeII RGCGCY 1 cut(s) 83
HaeIII GGCC 2 cut(s) 62, 203
HapII CCGG 1 cut(s) 93
HhaI GCGC 1 cut(s) 82
Hin1II CATG 1 cut(s) 118
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HpaII CCGG 1 cut(s) 93
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 3 cut(s) 169, 225, 351
Hpy188III TCNNGA 1 cut(s) 241
Hpy8I GTNNAC 1 cut(s) 277
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 2 cut(s) 49, 238
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 1 cut(s) 115
HpyF3I CTNAG 3 cut(s) 41, 233, 350
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 1 cut(s) 118
HspAI GCGC 1 cut(s) 80
KroI GCCGGC 1 cut(s) 92
KroNI GCCGGC 1 cut(s) 94
Kzo9I GATC 1 cut(s) 66
LpnPI CCDG 3 cut(s) 106, 226, 294
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 3 cut(s) 151, 256, 277
MaeI CTAG 1 cut(s) 77
MaeII ACGT 1 cut(s) 27
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MflI RGATCY 1 cut(s) 66
MhlI GDGCHC 1 cut(s) 33
MluCI AATT 2 cut(s) 331, 345
MnlI CCTC 5 cut(s) 50, 52, 123, 163, 209
MroNI GCCGGC 1 cut(s) 92
MseI TTAA 1 cut(s) 303
MslI CAYNNNNRTG 1 cut(s) 326
MspI CCGG 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 115
NaeI GCCGGC 1 cut(s) 94
NdeII GATC 1 cut(s) 66
NgoMIV GCCGGC 1 cut(s) 92
NlaIII CATG 1 cut(s) 118
NspI RCATGY 1 cut(s) 118
PceI AGGCCT 1 cut(s) 203
PdiI GCCGGC 1 cut(s) 94
PkrI GCNGC 1 cut(s) 141
PsuI RGATCY 1 cut(s) 66
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
RseI CAYNNNNRTG 1 cut(s) 326
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 1 cut(s) 140
Sau3AI GATC 1 cut(s) 66
SduI GDGCHC 1 cut(s) 33
SetI ASST 6 cut(s) 30, 107, 134, 151, 220, 264
SfaNI GCATC 3 cut(s) 151, 256, 277
SmiMI CAYNNNNRTG 1 cut(s) 326
Sse9I AATT 2 cut(s) 331, 345
SseBI AGGCCT 1 cut(s) 203
SspMI CTAG 1 cut(s) 77
StuI AGGCCT 1 cut(s) 203
TaaI ACNGT 1 cut(s) 328
TaiI ACGT 1 cut(s) 30
TaqI TCGA 2 cut(s) 12, 84
TasI AATT 2 cut(s) 331, 345
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 1 cut(s) 361
TseI GCWGC 1 cut(s) 139
TspRI CASTG 1 cut(s) 361
XapI RAATTY 2 cut(s) 331, 345
XceI RCATGY 1 cut(s) 118
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.