Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005553

Physical Location & Seq

Genomic Coordinates Forward (+)

9442190 .. 9443297

Gene Structure 1108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g13280.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTTTCTGGTGGATTGGTTCTATGGAGTTCTTGCGTCGCTTGGGCTATGGCAGAAGGAGGCCAAGATCTTGTTCTTAGGGCTCGATAATGCCGGAAAGACCACCTTGCTTCACATGCTCAAAGACGAGAGATTAGTTCAGCACCAACCGACGCAGCATCCGACGTCGGAGGAGCTGAGTATTGGGAAGATTAAGTTCAAGGCCTTTGATTTGGGAGGGCATCAGGTCGCTCGCAGAGTTTGGAAGGACTATTACGCCAAGGTGGATGCTGTGGTCTACCTGGTTGATGCTTACGACAAGGAGAGATTTGCAGAGTCAAAGAAGGAGCTTGATGCTCTACTCTCTGACGAGTCACTGGCAACTGTCCCGTTTCTTATTTTGGGAAACAAGATCGATCATATGTACCATATGCTGCATCAGAGGATGAGCTACGTTACCATTTGGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

150

Amino Acids

17.26

Weight (kDa)

6.65

Isoelectric Point (pI)

29.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005553)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g00030 pycom15g34450 pycom16g13280
rosa_chinensis	RchiOBHm_Chr7g0225741 RchiOBHm_Chr7g0225771 RchiOBHm_Chr7g0225801 RchiOBHm_Chr7g0225921
rosa_laevigata	RLG00000006460 RLG00000033226 RLG00000033535 RLG00000036912
rosa_multiflora	Rmu_co8290005.1_g000001 Rmu_sc0000487.1_g000032 Rmu_sc0002603.1_g000001 Rmu_sc0022500.1_g000007 Rmu_sc0033404.1_g000001
rosa_rugosa	Rorug07G0052500
rosa_samantha	Rh1AG084700 Rh1DG089100 Rh2AG444900 Rh2CG431700 Rh4CG008300 Rh5CG358500 Rh7BG179300 Rh7CG390000 Rh7DG378100 Rh7DG378300
rosa_wichuraiana	Rw2G036330 Rw7G031910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	167
AccI	GTMKAC	1 cut(s)	276
AcyI	GRCGYC	1 cut(s)	164
AfaI	GTAC	1 cut(s)	404
AgsI	TTSAA	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	279
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	3 cut(s)	175, 328, 429
AluI	AGCT	3 cut(s)	175, 328, 429
AoxI	GGCC	3 cut(s)	60, 201, 444
ApeKI	GCWGC	2 cut(s)	154, 412
AspS9I	GGNCC	1 cut(s)	444
BanII	GRGCYC	1 cut(s)	84
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
BbvI	GCAGC	2 cut(s)	166, 399
BciT130I	CCWGG	1 cut(s)	281
BglII	AGATCT	1 cut(s)	66
BisI	GCNGC	2 cut(s)	155, 413
BlsI	GCNGC	2 cut(s)	156, 414
Bme1390I	CCNGG	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	444
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	6 cut(s)	166, 229, 256, 277, 322, 424
Bsa29I	ATCGAT	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	258
Bse1I	ACTGG	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	281
BseCI	ATCGAT	1 cut(s)	393
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	3 cut(s)	157, 271, 429
BseMII	CTCAG	1 cut(s)	167
BseNI	ACTGG	1 cut(s)	360
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	2 cut(s)	166, 399
BshFI	GGCC	3 cut(s)	62, 203, 446
BshVI	ATCGAT	1 cut(s)	393
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	3 cut(s)	62, 203, 446
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	3 cut(s)	66, 390, 394
BspANI	GGCC	3 cut(s)	62, 203, 446
BspCNI	CTCAG	1 cut(s)	168
BspDI	ATCGAT	1 cut(s)	393
BsrI	ACTGG	1 cut(s)	360
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	3 cut(s)	66, 390, 394
BssNI	GRCGYC	1 cut(s)	164
BssT1I	CCWWGG	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	364
BstACI	GRCGYC	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	232
BstDEI	CTNAG	2 cut(s)	76, 176
BstF5I	GGATG	3 cut(s)	157, 271, 429
BstKTI	GATC	3 cut(s)	69, 393, 397
BstMBI	GATC	3 cut(s)	66, 390, 394
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstNI	CCWGG	1 cut(s)	281
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	279
BstV1I	GCAGC	2 cut(s)	166, 399
BstX2I	RGATCY	1 cut(s)	66
BstYI	RGATCY	1 cut(s)	66
Bsu15I	ATCGAT	1 cut(s)	393
BsuRI	GGCC	3 cut(s)	62, 203, 446
BsuTUI	ATCGAT	1 cut(s)	393
BtsCI	GGATG	3 cut(s)	157, 271, 429
BtsIMutI	CAGTG	1 cut(s)	353
Cac8I	GCNNGC	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	444
ClaI	ATCGAT	1 cut(s)	393
CseI	GACGC	2 cut(s)	24, 160
CsiI	ACCWGGT	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	8 cut(s)	46, 62, 82, 175, 203, 328, 429, 446
CviKI_1	RGCY	8 cut(s)	46, 62, 82, 175, 203, 328, 429, 446
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	2 cut(s)	76, 176
DpnI	GATC	3 cut(s)	68, 392, 396
DpnII	GATC	3 cut(s)	66, 390, 394
Eco130I	CCWWGG	1 cut(s)	258
Eco147I	AGGCCT	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	1 cut(s)	118
FaiI	YATR	7 cut(s)	24, 49, 116, 399, 401, 408, 410
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	1 cut(s)	114
FauNDI	CATATG	2 cut(s)	399, 408
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	2 cut(s)	155, 413
FokI	GGATG	3 cut(s)	144, 278, 436
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	2 cut(s)	155, 413
GluI	GCNGC	2 cut(s)	155, 413
HaeIII	GGCC	3 cut(s)	62, 203, 446
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	2 cut(s)	24, 160
Hin1I	GRCGYC	1 cut(s)	164
Hin1II	CATG	1 cut(s)	118
HinfI	GANTC	2 cut(s)	314, 350
HpaII	CCGG	1 cut(s)	93
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	4 cut(s)	162, 169, 346, 420
Hpy8I	GTNNAC	1 cut(s)	277
Hpy99I	CGWCG	4 cut(s)	40, 154, 166, 169
HpyAV	CCTTC	3 cut(s)	49, 238, 316
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4IV	ACGT	2 cut(s)	164, 432
HpyCH4V	TGCA	2 cut(s)	311, 415
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HpyF3I	CTNAG	2 cut(s)	76, 176
HpySE526I	ACGT	2 cut(s)	164, 432
Hsp92I	GRCGYC	1 cut(s)	164
Hsp92II	CATG	1 cut(s)	118
Kzo9I	GATC	3 cut(s)	66, 390, 394
LmnI	GCTCC	2 cut(s)	172, 325
LpnPI	CCDG	5 cut(s)	106, 209, 266, 293, 341
Lsp1109I	GCAGC	2 cut(s)	166, 399
LweI	GCATC	6 cut(s)	166, 229, 256, 277, 322, 424
MabI	ACCWGGT	1 cut(s)	279
MaeII	ACGT	2 cut(s)	164, 432
MaeIII	GTNAC	2 cut(s)	351, 433
MalI	GATC	3 cut(s)	68, 392, 396
MboI	GATC	3 cut(s)	66, 390, 394
MboII	GAAGA	1 cut(s)	199
MflI	RGATCY	1 cut(s)	66
MhlI	GDGCHC	1 cut(s)	84
MlyI	GAGTC	2 cut(s)	323, 359
MmeI	TCCRAC	2 cut(s)	147, 185
MnlI	CCTC	4 cut(s)	52, 163, 209, 414
MseI	TTAA	1 cut(s)	192
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	1 cut(s)	115
NdeI	CATATG	2 cut(s)	399, 408
NdeII	GATC	3 cut(s)	66, 390, 394
NlaIII	CATG	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	351
NspI	RCATGY	1 cut(s)	118
PceI	AGGCCT	1 cut(s)	203
PcsI	WCGNNNNNNNCGW	1 cut(s)	158
PkrI	GCNGC	2 cut(s)	156, 414
PleI	GAGTC	2 cut(s)	322, 358
PpsI	GAGTC	2 cut(s)	322, 358
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	444
PsuI	RGATCY	1 cut(s)	66
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	2 cut(s)	155, 413
Sau3AI	GATC	3 cut(s)	66, 390, 394
Sau96I	GGNCC	1 cut(s)	444
SchI	GAGTC	2 cut(s)	323, 359
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	9 cut(s)	107, 167, 177, 228, 264, 282, 330, 431, 435
SexAI	ACCWGGT	1 cut(s)	279
SfaNI	GCATC	6 cut(s)	166, 229, 256, 277, 322, 424
SseBI	AGGCCT	1 cut(s)	203
StuI	AGGCCT	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	364
TaiI	ACGT	2 cut(s)	167, 435
TaqI	TCGA	2 cut(s)	84, 393
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	1 cut(s)	360
TseFI	GTSAC	1 cut(s)	351
TseI	GCWGC	2 cut(s)	154, 412
Tsp45I	GTSAC	1 cut(s)	351
TspRI	CASTG	1 cut(s)	360
XceI	RCATGY	1 cut(s)	118
XmiI	GTMKAC	1 cut(s)	276
ZraI	GACGTC	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.