Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002603.1

Orthogroup ID

OG0005553

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 689

Gene Structure 689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002603.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

atgttcttgttcgactggttctacggcgtcctcgcatctctgggcctctggcagaaggaggccaagattctcttcctcggcctcgacaatgccggaaagaccacgctgcttcatatgttgaaggatgagagactagtgcagcaccagccgacgcagcatccgacgtcggaggaattgagcattgggaagattaagttcaaggctttcgatttggggggacaccagatcgctcgcagagtctggaaggattactatgcgaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

87

Amino Acids

10.14

Weight (kDa)

9.3

Isoelectric Point (pI)

31.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005553)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g00030 pycom15g34450 pycom16g13280
rosa_chinensis	RchiOBHm_Chr7g0225741 RchiOBHm_Chr7g0225771 RchiOBHm_Chr7g0225801 RchiOBHm_Chr7g0225921
rosa_laevigata	RLG00000006460 RLG00000033226 RLG00000033535 RLG00000036912
rosa_multiflora	Rmu_co8290005.1_g000001 Rmu_sc0000487.1_g000032 Rmu_sc0002603.1_g000001 Rmu_sc0022500.1_g000007 Rmu_sc0033404.1_g000001
rosa_rugosa	Rorug07G0052500
rosa_samantha	Rh1AG084700 Rh1DG089100 Rh2AG444900 Rh2CG431700 Rh4CG008300 Rh5CG358500 Rh7BG179300 Rh7CG390000 Rh7DG378100 Rh7DG378300
rosa_wichuraiana	Rw2G036330 Rw7G031910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	167
AcyI	GRCGYC	2 cut(s)	27, 164
AgsI	TTSAA	2 cut(s)	121, 199
AhlI	ACTAGT	1 cut(s)	133
AjuI	GAANNNNNNNTTGG	4 cut(s)	56, 88, 165, 197
Alw26I	GTCTC	1 cut(s)	124
AlwNI	CAGNNNCTG	1 cut(s)	240
AoxI	GGCC	3 cut(s)	43, 60, 79
ApeKI	GCWGC	3 cut(s)	106, 139, 154
AspS9I	GGNCC	1 cut(s)	43
BbvI	GCAGC	3 cut(s)	93, 151, 166
BceAI	ACGGC	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	124
BcuI	ACTAGT	1 cut(s)	133
BfaI	CTAG	1 cut(s)	134
BisI	GCNGC	3 cut(s)	107, 140, 155
BlsI	GCNGC	3 cut(s)	108, 141, 156
BmgT120I	GGNCC	1 cut(s)	43
BmsI	GCATC	2 cut(s)	44, 166
BsaHI	GRCGYC	2 cut(s)	27, 164
BsaJI	CCNNGG	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	76
BseGI	GGATG	2 cut(s)	130, 157
BseNI	ACTGG	1 cut(s)	20
BseXI	GCAGC	3 cut(s)	93, 151, 166
BsgI	GTGCAG	1 cut(s)	158
BshFI	GGCC	3 cut(s)	45, 62, 81
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	231
BsmAI	GTCTC	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	231
BsnI	GGCC	3 cut(s)	45, 62, 81
Bsp143I	GATC	1 cut(s)	225
BspANI	GGCC	3 cut(s)	45, 62, 81
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	1 cut(s)	225
BssNI	GRCGYC	2 cut(s)	27, 164
Bst6I	CTCTTC	1 cut(s)	77
BstACI	GRCGYC	2 cut(s)	27, 164
BstC8I	GCNNGC	1 cut(s)	232
BstF5I	GGATG	2 cut(s)	130, 157
BstKTI	GATC	1 cut(s)	228
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	225
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 154
BstV1I	GCAGC	3 cut(s)	93, 151, 166
BsuRI	GGCC	3 cut(s)	45, 62, 81
BtsCI	GGATG	2 cut(s)	130, 157
Cac8I	GCNNGC	1 cut(s)	232
CaiI	CAGNNNCTG	1 cut(s)	240
Cfr13I	GGNCC	1 cut(s)	43
CseI	GACGC	2 cut(s)	16, 160
CviJI	RGCY	5 cut(s)	45, 62, 81, 148, 203
CviKI_1	RGCY	5 cut(s)	45, 62, 81, 148, 203
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
FaiI	YATR	3 cut(s)	114, 116, 255
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FaqI	GGGAC	1 cut(s)	231
FauNDI	CATATG	1 cut(s)	114
Fnu4HI	GCNGC	3 cut(s)	107, 140, 155
FokI	GGATG	2 cut(s)	137, 144
Fsp4HI	GCNGC	3 cut(s)	107, 140, 155
FspBI	CTAG	1 cut(s)	134
GluI	GCNGC	3 cut(s)	107, 140, 155
HaeIII	GGCC	3 cut(s)	45, 62, 81
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	2 cut(s)	16, 160
Hin1I	GRCGYC	2 cut(s)	27, 164
HinfI	GANTC	2 cut(s)	67, 237
HpaII	CCGG	1 cut(s)	93
Hpy188I	TCNGA	2 cut(s)	162, 169
Hpy188III	TCNNGA	1 cut(s)	241
Hpy99I	CGWCG	3 cut(s)	154, 166, 169
HpyAV	CCTTC	3 cut(s)	49, 115, 238
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 154
HpySE526I	ACGT	1 cut(s)	164
Hsp92I	GRCGYC	2 cut(s)	27, 164
Kzo9I	GATC	1 cut(s)	225
LpnPI	CCDG	6 cut(s)	26, 34, 106, 158, 226, 236
Lsp1109I	GCAGC	3 cut(s)	93, 151, 166
LweI	GCATC	2 cut(s)	44, 166
MaeI	CTAG	1 cut(s)	134
MaeII	ACGT	1 cut(s)	164
MalI	GATC	1 cut(s)	227
MboI	GATC	1 cut(s)	225
MboII	GAAGA	2 cut(s)	64, 199
MluCI	AATT	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	246
MmeI	TCCRAC	2 cut(s)	147, 185
MnlI	CCTC	6 cut(s)	41, 52, 56, 86, 92, 163
MseI	TTAA	1 cut(s)	192
MspI	CCGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	2 cut(s)	145, 154
NdeI	CATATG	1 cut(s)	114
NdeII	GATC	1 cut(s)	225
NmeAIII	GCCGAG	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	67
PkrI	GCNGC	3 cut(s)	108, 141, 156
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
PspPI	GGNCC	1 cut(s)	43
PstNI	CAGNNNCTG	1 cut(s)	240
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	3 cut(s)	107, 140, 155
Sau3AI	GATC	1 cut(s)	225
Sau96I	GGNCC	1 cut(s)	43
SchI	GAGTC	1 cut(s)	246
SetI	ASST	1 cut(s)	167
SfaNI	GCATC	2 cut(s)	44, 166
SpeI	ACTAGT	1 cut(s)	133
Sse9I	AATT	1 cut(s)	173
SspMI	CTAG	1 cut(s)	134
TaiI	ACGT	1 cut(s)	167
TaqI	TCGA	3 cut(s)	12, 84, 207
TasI	AATT	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	67
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TseI	GCWGC	3 cut(s)	106, 139, 154
TspDTI	ATGAA	1 cut(s)	101
XspI	CTAG	1 cut(s)	134
ZraI	GACGTC	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.