pycom04g08370

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0008886
Physical Location & Seq
Forward (+)
9981641 .. 9982783
1143 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 495 bp
ATGTGGTATTTGCAGAATGTTTTCCACTGTAACAAGTGTGGATGTTGTTACTCAAGGGCGATGAAGGATTCAAACAATTGTGTGGAAAAAGCGATGCATCATAATTGCCCTGTGTGCTTTGAAGTAAAGTTTGGAGAATACTGTTGCACCAACTCACATCGGTTATTTCTGCAGTTTCTTTTGGATACAAGGGAAGACATTACTGTCTTGCGATGTGGACACAATATTCATTTGGAATGTATTCATGCCCAGGTTGCAAAATCATTCTGCGATATGTCCCGTGTATGGGAAAAACTTGATGAGGAGGTGGCAGGGACTCCCATGCCTCAGAAGTATCAAAATAAGATGGTTTGGATCCTCTGCAACTACTGTGGTGAAACATCTCAGGTTAATTTTCACATTGTGGCACACAAGTGCCTCAAGTGCAAATCCTACAATACAAGGAAAACACGAGAAGGGCCAGCGTCATTCTCGTCTAGGATTACTGCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

165

Amino Acids

19.12

Weight (kDa)

8.58

Isoelectric Point (pI)

53.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zinc_ribbon_6 PF14599 90 - 148 8.2e-26 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 203
AclWI GGATC 2 cut(s) 349, 362
AdeI CACNNNGTG 1 cut(s) 403
AfiI CCNNNNNNNGG 2 cut(s) 285, 286
AgsI TTSAA 2 cut(s) 72, 122
AjnI CCWGG 1 cut(s) 249
AjuI GAANNNNNNNTTGG 2 cut(s) 114, 146
AleI CACNNNNGTG 1 cut(s) 412
AlwI GGATC 2 cut(s) 349, 362
AoxI GGCC 1 cut(s) 458
Asp700I GAANNNNTTC 2 cut(s) 20, 240
AspS9I GGNCC 1 cut(s) 458
AsuHPI GGTGA 1 cut(s) 386
BamHI GGATCC 1 cut(s) 354
BauI CACGAG 1 cut(s) 450
BbsI GAAGAC 1 cut(s) 201
BccI CCATC 1 cut(s) 340
BciT130I CCWGG 1 cut(s) 251
BciVI GTATCC 1 cut(s) 178
BfaI CTAG 1 cut(s) 477
BfmI CTRYAG 1 cut(s) 170
BfuI GTATCC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 458
BmiI GGNNCC 1 cut(s) 356
BmrFI CCNGG 1 cut(s) 251
BmsI GCATC 2 cut(s) 84, 106
BpiI GAAGAC 1 cut(s) 201
BpuEI CTTGAG 2 cut(s) 37, 404
BsaJI CCNNGG 1 cut(s) 249
Bsc4I CCNNNNNNNGG 2 cut(s) 285, 286
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 1 cut(s) 47
BseLI CCNNNNNNNGG 2 cut(s) 285, 286
BseMII CTCAG 2 cut(s) 341, 398
BseRI GAGGAG 1 cut(s) 317
BshFI GGCC 1 cut(s) 460
BslFI GGGAC 2 cut(s) 262, 328
BslI CCNNNNNNNGG 2 cut(s) 285, 286
BsmFI GGGAC 2 cut(s) 262, 328
BsnI GGCC 1 cut(s) 460
Bsp143I GATC 1 cut(s) 354
BspANI GGCC 1 cut(s) 460
BspCNI CTCAG 2 cut(s) 340, 397
BspLI GGNNCC 1 cut(s) 356
BspMAI CTGCAG 1 cut(s) 174
BspPI GGATC 2 cut(s) 349, 362
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 1 cut(s) 354
BssSI CACGAG 1 cut(s) 450
Bst2BI CACGAG 1 cut(s) 450
Bst2UI CCWGG 1 cut(s) 251
Bst4CI ACNGT 4 cut(s) 29, 143, 205, 371
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 2 cut(s) 327, 384
BstF5I GGATG 1 cut(s) 47
BstKTI GATC 1 cut(s) 357
BstMBI GATC 1 cut(s) 354
BstMWI GCNNNNNNNGC 3 cut(s) 114, 254, 423
BstNI CCWGG 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 249
BstSFI CTRYAG 1 cut(s) 170
BstV2I GAAGAC 1 cut(s) 201
BstX2I RGATCY 1 cut(s) 354
BstYI RGATCY 1 cut(s) 354
BsuI GTATCC 1 cut(s) 178
BsuRI GGCC 1 cut(s) 460
BtgZI GCGATG 3 cut(s) 74, 107, 226
BtsCI GGATG 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 462
Cfr13I GGNCC 1 cut(s) 458
CseI GACGC 1 cut(s) 453
CspCI CAANNNNNGTGG 2 cut(s) 352, 387
CviAII CATG 2 cut(s) 245, 322
CviJI RGCY 1 cut(s) 460
CviKI_1 RGCY 1 cut(s) 460
DdeI CTNAG 2 cut(s) 327, 384
DpnI GATC 1 cut(s) 356
DpnII GATC 1 cut(s) 354
DraIII CACNNNGTG 1 cut(s) 403
DrdI GACNNNNNNGTC 1 cut(s) 203
DseDI GACNNNNNNGTC 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 249
EcoT22I ATGCAT 1 cut(s) 99
FaeI CATG 2 cut(s) 248, 325
FaiI YATR 5 cut(s) 102, 246, 275, 286, 323
FaqI GGGAC 2 cut(s) 262, 328
FatI CATG 2 cut(s) 244, 321
FokI GGATG 1 cut(s) 54
FspBI CTAG 1 cut(s) 477
HaeIII GGCC 1 cut(s) 460
HgaI GACGC 1 cut(s) 453
Hin1II CATG 2 cut(s) 248, 325
HinfI GANTC 2 cut(s) 68, 316
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 1 cut(s) 218
Hpy188I TCNGA 1 cut(s) 330
Hpy8I GTNNAC 1 cut(s) 218
HpyAV CCTTC 2 cut(s) 58, 449
HpyCH4III ACNGT 4 cut(s) 29, 143, 205, 371
HpyCH4V TGCA 8 cut(s) 13, 97, 147, 172, 257, 363, 426, 488
HpyF10VI GCNNNNNNNGC 3 cut(s) 114, 254, 423
HpyF3I CTNAG 2 cut(s) 327, 384
Hsp92II CATG 2 cut(s) 248, 325
Kzo9I GATC 1 cut(s) 354
LpnPI CCDG 6 cut(s) 123, 236, 263, 297, 371, 474
LweI GCATC 2 cut(s) 84, 106
MaeI CTAG 1 cut(s) 477
MaeIII GTNAC 2 cut(s) 29, 47
MalI GATC 1 cut(s) 356
MboI GATC 1 cut(s) 354
MboII GAAGA 1 cut(s) 206
MfeI CAATTG 1 cut(s) 76
MflI RGATCY 1 cut(s) 354
MluCI AATT 3 cut(s) 76, 103, 391
MlyI GAGTC 1 cut(s) 310
MnlI CCTC 5 cut(s) 295, 298, 336, 368, 428
Mph1103I ATGCAT 1 cut(s) 99
MroXI GAANNNNTTC 2 cut(s) 20, 240
MseI TTAA 1 cut(s) 390
MslI CAYNNNNRTG 1 cut(s) 412
MspR9I CCNGG 1 cut(s) 251
MunI CAATTG 1 cut(s) 76
MvaI CCWGG 1 cut(s) 251
MwoI GCNNNNNNNGC 3 cut(s) 114, 254, 423
NdeII GATC 1 cut(s) 354
NlaIII CATG 2 cut(s) 248, 325
NlaIV GGNNCC 1 cut(s) 356
NsiI ATGCAT 1 cut(s) 99
OliI CACNNNNGTG 1 cut(s) 412
PdmI GAANNNNTTC 2 cut(s) 20, 240
PfeI GAWTC 1 cut(s) 68
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 249
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 1 cut(s) 356
PspPI GGNCC 1 cut(s) 458
PstI CTGCAG 1 cut(s) 174
PsuI RGATCY 1 cut(s) 354
RseI CAYNNNNRTG 1 cut(s) 412
SaqAI TTAA 1 cut(s) 390
Sau3AI GATC 1 cut(s) 354
Sau96I GGNCC 1 cut(s) 458
SchI GAGTC 1 cut(s) 310
ScrFI CCNGG 1 cut(s) 251
SetI ASST 4 cut(s) 255, 309, 390, 494
SfaNI GCATC 2 cut(s) 84, 106
SfcI CTRYAG 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 412
SmlI CTYRAG 2 cut(s) 52, 419
SmoI CTYRAG 2 cut(s) 52, 419
Sse9I AATT 3 cut(s) 76, 103, 391
SspI AATATT 1 cut(s) 226
SspMI CTAG 1 cut(s) 477
StyD4I CCNGG 1 cut(s) 249
TaaI ACNGT 4 cut(s) 29, 143, 205, 371
TasI AATT 3 cut(s) 76, 103, 391
TfiI GAWTC 1 cut(s) 68
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TscAI CASTG 1 cut(s) 32
TspDTI ATGAA 3 cut(s) 77, 218, 233
TspRI CASTG 1 cut(s) 32
XmnI GAANNNNTTC 2 cut(s) 20, 240
XspI CTAG 1 cut(s) 477
Zsp2I ATGCAT 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.