pycom05g06040

UDP-D-xylose L-fucose alpha-1,3-D-xylosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0002462
Physical Location & Seq
Forward (+)
7784212 .. 7786089
1878 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1296 bp
ATGGCGGTGGTGGGTCGCAGGGAGAAAGCGCAGTCTCTCTGCAAATCGAGGGTCGTCGTCGCTATAACAATCGGAATCCTCCTGGGCTGCGTCTTCGCCCTCTGCTTCCCCAGCGGCTTTCTTTCCATTTCCAATCCTGCCCCCATTCTCAATCGCCGCTTCGCCAAATCCATCGCCCAGGTTGGTTCTTCCTTGTGTGAATCATCTGAACGGATCAACCTGTTGAAATCACAGTTTGTGGCCGCATCTGAGAAAAATGCCGAGTTGAAAAAGCTGGTTAGGGAATTGACTGAAAAGATTCGGTTGGCTGAACAAAGGAAAGATCAGGCAGAGAAACAGGTTCTTGTGTTGGGTGATCAGAAGAAAGCTGGTCCTTTTGGTACCGTCAAAGGCTTACTAACCAACCCCAGTGTTCTTCCAGATGAATCTGTGAATCCAAGATTGGCAAAGATTTTGGAGAAAGTTGCTGTTAATAGAGAACTTATAGTTGCTCTTGCAAACTCGAATGTGAAGGAAATGTTGGAGGTATGGTTCGCTAACATCAATAGGGTGGGCATATCCAATTATCTGGTTGTTGCTTTGGATGATGAAATTGCCAGATTCTGCGAATTGAAAAATGTTCCAGTTTATAAGAGAGACCCAAACAAAGTAATTGATTCGGTTGCAAGGACCGGAGGGAACCATGCTGTCTCTGGGCTAAAATTTCGTGTTCTGAGGGAGTTTTTGCAGCTCGGTTATAGTGTTCTTCTGTCAGATGTCGATATTGTGTACTTGCAAAACCCCTTTAATTATCTATATCGTGATTCAGATGTAGAGTCCATGACTGATGGTCACAACAATATGACTGCTTATGGTTACAATGACGTCTTTGATGAGCCAGGAATGGGTTGGGCTCGATATGCTCATACAATGCGTATATGGGTGTATAACTCTGGTTTCTTCTACATTCGACCGACAATTCCTTCAATTGAGTTATTCGATCGTGTGGCCAATCGACTCTCAAAGGAGCAGGCTTGGGACCAGGCAGTGTTCAACGAGGAACTCTTTTTCCCTTCTCATCCTGGGTATGATGGACTTCATGCTTCCAGGAGAACTATGGATTTCTATCTCTTTATGAATAGCAAGGTCCTCTTCAAGACCGTGAGGAAAGATGCTAAACTGAGCAAGTTGAAGCCGGTTATTGTTCACGTTAATTACCATCCTGATAAGTATCCTAGAATGTTAGCAATTATGGATTTTTATGTCAATGGGAAGCAGGATGCACTGAAACCTTTCCCTGATGGTTCAGAGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
Nucleotid_trans

Protein Analysis

432

Amino Acids

48.82

Weight (kDa)

9.17

Isoelectric Point (pI)

32.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 186 - 403 7.2e-48 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 630
AatII GACGTC 1 cut(s) 867
Acc65I GGTACC 1 cut(s) 380
AccB1I GGYRCC 1 cut(s) 380
AciI CCGC 4 cut(s) 5, 114, 157, 243
AclWI GGATC 1 cut(s) 221
AcoI YGGCCR 2 cut(s) 240, 987
AcsI RAATTY 1 cut(s) 701
AcyI GRCGYC 1 cut(s) 864
AfaI GTAC 2 cut(s) 382, 770
AfiI CCNNNNNNNGG 1 cut(s) 884
AgsI TTSAA 7 cut(s) 226, 268, 613, 966, 1033, 1135, 1171
AhdI GACNNNNNGTC 1 cut(s) 828
AjnI CCWGG 6 cut(s) 81, 177, 877, 1020, 1060, 1085
AjuI GAANNNNNNNTTGG 4 cut(s) 425, 457, 503, 535
AloI GAACNNNNNNTCC 4 cut(s) 515, 547, 1032, 1064
AluBI AGCT 3 cut(s) 274, 368, 730
AluI AGCT 3 cut(s) 274, 368, 730
Alw26I GTCTC 3 cut(s) 39, 630, 694
AlwI GGATC 1 cut(s) 221
AlwNI CAGNNNCTG 1 cut(s) 603
AoxI GGCC 2 cut(s) 240, 987
ApeKI GCWGC 2 cut(s) 87, 727
ApoI RAATTY 1 cut(s) 701
ArsI GACNNNNNNTTYG 2 cut(s) 36, 68
Asp700I GAANNNNTTC 2 cut(s) 297, 1271
Asp718I GGTACC 1 cut(s) 380
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 4 cut(s) 371, 669, 1018, 1126
AsuHPI GGTGA 1 cut(s) 365
AvaII GGWCC 4 cut(s) 371, 669, 1018, 1126
BalI TGGCCA 1 cut(s) 989
BanI GGYRCC 1 cut(s) 380
BanII GRGCYC 1 cut(s) 895
BbsI GAAGAC 1 cut(s) 85
BbvI GCAGC 2 cut(s) 74, 739
BccI CCATC 5 cut(s) 179, 821, 1064, 1206, 1274
BciT130I CCWGG 6 cut(s) 83, 179, 879, 1022, 1062, 1087
BciVI GTATCC 1 cut(s) 1221
BclI TGATCA 1 cut(s) 355
BcoDI GTCTC 3 cut(s) 39, 630, 694
BfaI CTAG 1 cut(s) 1215
BfuI GTATCC 1 cut(s) 1221
BisI GCNGC 5 cut(s) 88, 115, 157, 243, 728
BlsI GCNGC 5 cut(s) 89, 116, 158, 244, 729
Bme1390I CCNGG 6 cut(s) 83, 179, 879, 1022, 1062, 1087
Bme18I GGWCC 4 cut(s) 371, 669, 1018, 1126
BmeRI GACNNNNNGTC 1 cut(s) 828
BmgT120I GGNCC 4 cut(s) 371, 669, 1018, 1126
BmiI GGNNCC 3 cut(s) 382, 680, 1019
BmrFI CCNGG 6 cut(s) 83, 179, 879, 1022, 1062, 1087
BmrI ACTGGG 1 cut(s) 402
BmsI GCATC 3 cut(s) 254, 1141, 1249
BmuI ACTGGG 1 cut(s) 402
BpiI GAAGAC 1 cut(s) 85
BsaBI GATNNNNATC 2 cut(s) 1104, 1209
BsaHI GRCGYC 1 cut(s) 864
BsaI GGTCTC 1 cut(s) 630
BsaJI CCNNGG 3 cut(s) 82, 177, 1061
BsaWI WCCGGW 1 cut(s) 671
BsaXI ACNNNNNCTCC 2 cut(s) 515, 545
Bsc4I CCNNNNNNNGG 1 cut(s) 884
Bse118I RCCGGY 1 cut(s) 1174
Bse1I ACTGG 2 cut(s) 408, 623
Bse8I GATNNNNATC 2 cut(s) 1104, 1209
BseBI CCWGG 6 cut(s) 83, 179, 879, 1022, 1062, 1087
BseDI CCNNGG 3 cut(s) 82, 177, 1061
BseGI GGATG 4 cut(s) 589, 1057, 1198, 1264
BseJI GATNNNNATC 2 cut(s) 1104, 1209
BseLI CCNNNNNNNGG 1 cut(s) 884
BseMII CTCAG 3 cut(s) 240, 704, 1151
BseNI ACTGG 2 cut(s) 408, 623
BseXI GCAGC 2 cut(s) 74, 739
BseYI CCCAGC 1 cut(s) 110
Bsh1285I CGRYCG 2 cut(s) 953, 982
BshFI GGCC 2 cut(s) 242, 989
BshNI GGYRCC 1 cut(s) 380
BsiEI CGRYCG 2 cut(s) 953, 982
BsiSI CCGG 2 cut(s) 672, 1175
BslFI GGGAC 1 cut(s) 1031
BslI CCNNNNNNNGG 1 cut(s) 884
BsmAI GTCTC 3 cut(s) 39, 630, 694
BsmFI GGGAC 1 cut(s) 1031
BsnI GGCC 2 cut(s) 242, 989
Bso31I GGTCTC 1 cut(s) 630
Bsp1286I GDGCHC 1 cut(s) 895
Bsp143I GATC 4 cut(s) 213, 322, 355, 979
BspACI CCGC 4 cut(s) 5, 114, 157, 243
BspANI GGCC 2 cut(s) 242, 989
BspCNI CTCAG 3 cut(s) 241, 705, 1152
BspLI GGNNCC 3 cut(s) 382, 680, 1019
BspPI GGATC 1 cut(s) 221
BspT107I GGYRCC 1 cut(s) 380
BspTNI GGTCTC 1 cut(s) 630
BsrFI RCCGGY 1 cut(s) 1174
BsrI ACTGG 2 cut(s) 408, 623
BssAI RCCGGY 1 cut(s) 1174
BssECI CCNNGG 3 cut(s) 82, 177, 1061
BssMI GATC 4 cut(s) 213, 322, 355, 979
BssNI GRCGYC 1 cut(s) 864
Bst2UI CCWGG 6 cut(s) 83, 179, 879, 1022, 1062, 1087
Bst4CI ACNGT 3 cut(s) 234, 385, 1141
Bst6I CTCTTC 1 cut(s) 1136
BstACI GRCGYC 1 cut(s) 864
BstC8I GCNNGC 1 cut(s) 1011
BstDEI CTNAG 3 cut(s) 249, 713, 1160
BstF5I GGATG 4 cut(s) 589, 1057, 1198, 1264
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 4 cut(s) 216, 325, 358, 982
BstMAI GTCTC 3 cut(s) 39, 630, 694
BstMBI GATC 4 cut(s) 213, 322, 355, 979
BstMCI CGRYCG 2 cut(s) 953, 982
BstMWI GCNNNNNNNGC 2 cut(s) 111, 899
BstNI CCWGG 6 cut(s) 83, 179, 879, 1022, 1062, 1087
BstSCI CCNGG 6 cut(s) 81, 177, 877, 1020, 1060, 1085
BstV1I GCAGC 2 cut(s) 74, 739
BstV2I GAAGAC 1 cut(s) 85
BstXI CCANNNNNNTGG 1 cut(s) 568
BsuI GTATCC 1 cut(s) 1221
BsuRI GGCC 2 cut(s) 242, 989
BtgZI GCGATG 1 cut(s) 157
BtsCI GGATG 4 cut(s) 589, 1057, 1198, 1264
BtsI GCAGTG 1 cut(s) 1032
BtsIMutI CAGTG 3 cut(s) 415, 1032, 1262
Cac8I GCNNGC 1 cut(s) 1011
CaiI CAGNNNCTG 1 cut(s) 603
CfoI GCGC 1 cut(s) 31
Cfr10I RCCGGY 1 cut(s) 1174
Cfr13I GGNCC 4 cut(s) 371, 669, 1018, 1126
CseI GACGC 1 cut(s) 79
Csp6I GTAC 2 cut(s) 381, 769
CviAII CATG 3 cut(s) 683, 820, 1079
CviQI GTAC 2 cut(s) 381, 769
DdeI CTNAG 3 cut(s) 249, 713, 1160
DpnI GATC 4 cut(s) 215, 324, 357, 981
DpnII GATC 4 cut(s) 213, 322, 355, 979
DriI GACNNNNNGTC 1 cut(s) 828
EaeI YGGCCR 2 cut(s) 240, 987
Eam1104I CTCTTC 1 cut(s) 1136
Eam1105I GACNNNNNGTC 1 cut(s) 828
EarI CTCTTC 1 cut(s) 1136
Eco24I GRGCYC 1 cut(s) 895
Eco31I GGTCTC 1 cut(s) 630
Eco47I GGWCC 4 cut(s) 371, 669, 1018, 1126
EcoO109I RGGNCCY 1 cut(s) 1126
EcoRII CCWGG 6 cut(s) 81, 177, 877, 1020, 1060, 1085
EcoT38I GRGCYC 1 cut(s) 895
FaeI CATG 3 cut(s) 686, 823, 1082
FalI AAGNNNNNCTT 2 cut(s) 1115, 1147
FaqI GGGAC 1 cut(s) 1031
FatI CATG 3 cut(s) 682, 819, 1078
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 5 cut(s) 88, 115, 157, 243, 728
FokI GGATG 4 cut(s) 596, 1044, 1185, 1271
FriOI GRGCYC 1 cut(s) 895
Fsp4HI GCNGC 5 cut(s) 88, 115, 157, 243, 728
FspBI CTAG 1 cut(s) 1215
GlaI GCGC 1 cut(s) 30
GluI GCNGC 5 cut(s) 88, 115, 157, 243, 728
GsaI CCCAGC 1 cut(s) 114
HaeIII GGCC 2 cut(s) 242, 989
HapII CCGG 2 cut(s) 672, 1175
HgaI GACGC 1 cut(s) 79
HhaI GCGC 1 cut(s) 31
Hin1I GRCGYC 1 cut(s) 864
Hin1II CATG 3 cut(s) 686, 823, 1082
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HpaII CCGG 2 cut(s) 672, 1175
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 2 cut(s) 769, 1186
Hpy188I TCNGA 8 cut(s) 74, 208, 250, 360, 714, 754, 808, 1288
Hpy188III TCNNGA 4 cut(s) 419, 800, 1135, 1202
Hpy8I GTNNAC 2 cut(s) 769, 1186
Hpy99I CGWCG 2 cut(s) 59, 62
HpyAV CCTTC 3 cut(s) 505, 972, 1062
HpyCH4III ACNGT 3 cut(s) 234, 385, 1141
HpyCH4IV ACGT 2 cut(s) 864, 1188
HpyCH4V TGCA 6 cut(s) 42, 497, 665, 727, 775, 1262
HpyF10VI GCNNNNNNNGC 2 cut(s) 111, 899
HpyF3I CTNAG 3 cut(s) 249, 713, 1160
HpySE526I ACGT 2 cut(s) 864, 1188
Hsp92I GRCGYC 1 cut(s) 864
Hsp92II CATG 3 cut(s) 686, 823, 1082
HspAI GCGC 1 cut(s) 29
KpnI GGTACC 1 cut(s) 384
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 4 cut(s) 213, 322, 355, 979
LmnI GCTCC 1 cut(s) 1006
Lsp1109I GCAGC 2 cut(s) 74, 739
LweI GCATC 3 cut(s) 254, 1141, 1249
MaeI CTAG 1 cut(s) 1215
MaeII ACGT 2 cut(s) 864, 1188
MaeIII GTNAC 2 cut(s) 830, 854
MalI GATC 4 cut(s) 215, 324, 357, 981
MboI GATC 4 cut(s) 213, 322, 355, 979
MboII GAAGA 7 cut(s) 85, 180, 373, 407, 737, 931, 1123
MfeI CAATTG 1 cut(s) 966
MhlI GDGCHC 1 cut(s) 895
MlsI TGGCCA 1 cut(s) 989
MluNI TGGCCA 1 cut(s) 989
MlyI GAGTC 2 cut(s) 824, 990
MmeI TCCRAC 1 cut(s) 501
MnlI CCTC 9 cut(s) 42, 89, 110, 517, 668, 708, 1030, 1137, 1139
Mox20I TGGCCA 1 cut(s) 989
MroXI GAANNNNTTC 2 cut(s) 297, 1271
MscI TGGCCA 1 cut(s) 989
MseI TTAA 3 cut(s) 471, 786, 1191
Msp20I TGGCCA 1 cut(s) 989
MspA1I CMGCKG 1 cut(s) 114
MspI CCGG 2 cut(s) 672, 1175
MspR9I CCNGG 6 cut(s) 83, 179, 879, 1022, 1062, 1087
MunI CAATTG 1 cut(s) 966
MvaI CCWGG 6 cut(s) 83, 179, 879, 1022, 1062, 1087
MwoI GCNNNNNNNGC 2 cut(s) 111, 899
NdeII GATC 4 cut(s) 213, 322, 355, 979
NlaIII CATG 3 cut(s) 686, 823, 1082
NlaIV GGNNCC 3 cut(s) 382, 680, 1019
NmeAIII GCCGAG 1 cut(s) 286
NmuCI GTSAC 1 cut(s) 830
PdmI GAANNNNTTC 2 cut(s) 297, 1271
PfeI GAWTC 8 cut(s) 75, 200, 298, 425, 433, 600, 656, 803
PfoI TCCNGGA 1 cut(s) 1085
PkrI GCNGC 5 cut(s) 89, 116, 158, 244, 729
Ple19I CGATCG 1 cut(s) 982
PleI GAGTC 2 cut(s) 823, 990
PpsI GAGTC 2 cut(s) 823, 990
PpuMI RGGWCCY 1 cut(s) 1126
PsiI TTATAA 1 cut(s) 630
Psp5II RGGWCCY 1 cut(s) 1126
Psp6I CCWGG 6 cut(s) 81, 177, 877, 1020, 1060, 1085
PspFI CCCAGC 1 cut(s) 110
PspGI CCWGG 6 cut(s) 81, 177, 877, 1020, 1060, 1085
PspN4I GGNNCC 3 cut(s) 382, 680, 1019
PspPI GGNCC 4 cut(s) 371, 669, 1018, 1126
PspPPI RGGWCCY 1 cut(s) 1126
PstNI CAGNNNCTG 1 cut(s) 603
PvuI CGATCG 1 cut(s) 982
RsaI GTAC 2 cut(s) 382, 770
RsaNI GTAC 2 cut(s) 381, 769
SaqAI TTAA 3 cut(s) 471, 786, 1191
SatI GCNGC 5 cut(s) 88, 115, 157, 243, 728
Sau3AI GATC 4 cut(s) 213, 322, 355, 979
Sau96I GGNCC 4 cut(s) 371, 669, 1018, 1126
SchI GAGTC 2 cut(s) 824, 990
ScrFI CCNGG 6 cut(s) 83, 179, 879, 1022, 1062, 1087
SduI GDGCHC 1 cut(s) 895
SfaNI GCATC 3 cut(s) 254, 1141, 1249
SinI GGWCC 4 cut(s) 371, 669, 1018, 1126
SsiI CCGC 4 cut(s) 5, 114, 157, 243
SspMI CTAG 1 cut(s) 1215
StyD4I CCNGG 6 cut(s) 81, 177, 877, 1020, 1060, 1085
TaaI ACNGT 3 cut(s) 234, 385, 1141
TaiI ACGT 2 cut(s) 867, 1191
TaqI TCGA 7 cut(s) 47, 503, 759, 895, 949, 978, 994
TaqII GACCGA 1 cut(s) 967
TatI WGTACW 1 cut(s) 768
TauI GCSGC 3 cut(s) 117, 159, 245
TfiI GAWTC 8 cut(s) 75, 200, 298, 425, 433, 600, 656, 803
Tru1I TTAA 3 cut(s) 471, 786, 1191
Tru9I TTAA 3 cut(s) 471, 786, 1191
TscAI CASTG 3 cut(s) 415, 1032, 1269
TseFI GTSAC 1 cut(s) 830
TseI GCWGC 2 cut(s) 87, 727
Tsp45I GTSAC 1 cut(s) 830
TspDTI ATGAA 4 cut(s) 438, 603, 1067, 1130
TspGWI ACGGA 1 cut(s) 226
TspRI CASTG 3 cut(s) 415, 1032, 1269
VpaK11BI GGWCC 4 cut(s) 371, 669, 1018, 1126
XapI RAATTY 1 cut(s) 701
XcmI CCANNNNNNNNNTGG 3 cut(s) 689, 885, 1093
XmnI GAANNNNTTC 2 cut(s) 297, 1271
XspI CTAG 1 cut(s) 1215
ZraI GACGTC 1 cut(s) 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.