pycom05g09320

Protein of unknown function (DUF620)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0002346
Physical Location & Seq
Forward (+)
12484228 .. 12484545
318 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g09320.1

Sequence Viewer

Length: 318 bp
ATGATTGCACATTCAGGGCGTTCCGTGGTAACCCTTTTCAGGTTCGGTGAAATGGCAATGAGCCATACCAAAACAAAGATGGAAGAAGCTTGGACCATCGAGGAGGTTGCATTTAATGTTCCAGGCTTGTCAATGGATTGCTTCATCCCCCCAGCTGACTTGAGATCAGGGACAATCAGTGAAGCATGCGAGCTTCCTCATGATGAAAGGGGAAAGGGTGGTGGGATTGCAGTAGCAGCACATCGGGCCAAAGTTGCTGCGCTGGAGAAAGAACATAATGCTAATGTTGATAGCCTGACCTGGAAAATGGAAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF620

Protein Analysis

106

Amino Acids

11.45

Weight (kDa)

5.68

Isoelectric Point (pI)

47.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF620 PF04788 1 - 51 2.2e-22 Protein of unknown function (DUF620)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 39
AjnI CCWGG 2 cut(s) 121, 299
AluBI AGCT 3 cut(s) 89, 155, 193
AluI AGCT 3 cut(s) 89, 155, 193
AoxI GGCC 1 cut(s) 246
ApeKI GCWGC 2 cut(s) 236, 257
AspLEI GCGC 1 cut(s) 262
AspS9I GGNCC 2 cut(s) 93, 246
AsuHPI GGTGA 1 cut(s) 59
AvaII GGWCC 1 cut(s) 93
BbvI GCAGC 2 cut(s) 244, 248
BccI CCATC 2 cut(s) 73, 104
BcgI CGANNNNNNTGC 2 cut(s) 89, 123
BciT130I CCWGG 2 cut(s) 123, 301
BisI GCNGC 2 cut(s) 237, 258
BlsI GCNGC 2 cut(s) 238, 259
Bme1390I CCNGG 2 cut(s) 123, 301
Bme18I GGWCC 1 cut(s) 93
BmgT120I GGNCC 2 cut(s) 93, 246
BmrFI CCNGG 2 cut(s) 123, 301
BpmI CTGGAG 1 cut(s) 284
BpuEI CTTGAG 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 24
Bsc4I CCNNNNNNNGG 1 cut(s) 39
Bse3DI GCAATG 1 cut(s) 63
BseBI CCWGG 2 cut(s) 123, 301
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 1 cut(s) 144
BseLI CCNNNNNNNGG 1 cut(s) 39
BseMI GCAATG 1 cut(s) 63
BseRI GAGGAG 1 cut(s) 116
BseXI GCAGC 2 cut(s) 244, 248
BseYI CCCAGC 1 cut(s) 151
BshFI GGCC 1 cut(s) 248
BslFI GGGAC 1 cut(s) 184
BslI CCNNNNNNNGG 1 cut(s) 39
BsmFI GGGAC 1 cut(s) 184
BsnI GGCC 1 cut(s) 248
Bsp143I GATC 1 cut(s) 164
BspANI GGCC 1 cut(s) 248
BspHI TCATGA 1 cut(s) 199
BsrDI GCAATG 1 cut(s) 63
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 1 cut(s) 164
Bst2UI CCWGG 2 cut(s) 123, 301
BstC8I GCNNGC 2 cut(s) 187, 191
BstDSI CCRYGG 1 cut(s) 24
BstEII GGTNACC 1 cut(s) 28
BstF5I GGATG 1 cut(s) 144
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 1 cut(s) 167
BstMBI GATC 1 cut(s) 164
BstMWI GCNNNNNNNGC 3 cut(s) 236, 245, 254
BstNI CCWGG 2 cut(s) 123, 301
BstNSI RCATGY 1 cut(s) 189
BstPI GGTNACC 1 cut(s) 28
BstSCI CCNGG 2 cut(s) 121, 299
BstV1I GCAGC 2 cut(s) 244, 248
BsuRI GGCC 1 cut(s) 248
BtgI CCRYGG 1 cut(s) 24
BtsCI GGATG 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 184
Cac8I GCNNGC 2 cut(s) 187, 191
CciI TCATGA 1 cut(s) 199
CfoI GCGC 1 cut(s) 262
Cfr13I GGNCC 2 cut(s) 93, 246
CviAII CATG 2 cut(s) 186, 200
CviJI RGCY 7 cut(s) 63, 89, 126, 155, 193, 248, 294
CviKI_1 RGCY 7 cut(s) 63, 89, 126, 155, 193, 248, 294
DpnI GATC 1 cut(s) 166
DpnII GATC 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 93
Eco91I GGTNACC 1 cut(s) 28
EcoO65I GGTNACC 1 cut(s) 28
EcoRII CCWGG 2 cut(s) 121, 299
FaeI CATG 2 cut(s) 189, 203
FaiI YATR 4 cut(s) 66, 187, 201, 276
FaqI GGGAC 1 cut(s) 184
FatI CATG 2 cut(s) 185, 199
Fnu4HI GCNGC 2 cut(s) 237, 258
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 2 cut(s) 237, 258
GlaI GCGC 1 cut(s) 261
GluI GCNGC 2 cut(s) 237, 258
GsaI CCCAGC 1 cut(s) 155
GsuI CTGGAG 1 cut(s) 284
HaeIII GGCC 1 cut(s) 248
HhaI GCGC 1 cut(s) 262
Hin1II CATG 2 cut(s) 189, 203
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HindIII AAGCTT 1 cut(s) 87
HphI GGTGA 1 cut(s) 59
Hpy188III TCNNGA 1 cut(s) 200
HpyCH4V TGCA 3 cut(s) 8, 110, 230
HpyF10VI GCNNNNNNNGC 3 cut(s) 236, 245, 254
Hsp92II CATG 2 cut(s) 189, 203
HspAI GCGC 1 cut(s) 260
Kzo9I GATC 1 cut(s) 164
LpnPI CCDG 9 cut(s) 25, 108, 135, 153, 165, 248, 286, 308, 313
Lsp1109I GCAGC 2 cut(s) 244, 248
MaeIII GTNAC 1 cut(s) 28
MalI GATC 1 cut(s) 166
MboI GATC 1 cut(s) 164
MboII GAAGA 1 cut(s) 95
MnlI CCTC 3 cut(s) 94, 97, 207
MseI TTAA 1 cut(s) 114
MspA1I CMGCKG 1 cut(s) 155
MspR9I CCNGG 2 cut(s) 123, 301
MvaI CCWGG 2 cut(s) 123, 301
MwoI GCNNNNNNNGC 3 cut(s) 236, 245, 254
NdeII GATC 1 cut(s) 164
NlaIII CATG 2 cut(s) 189, 203
NspI RCATGY 1 cut(s) 189
PaeI GCATGC 1 cut(s) 189
PagI TCATGA 1 cut(s) 199
PkrI GCNGC 2 cut(s) 238, 259
Psp6I CCWGG 2 cut(s) 121, 299
PspEI GGTNACC 1 cut(s) 28
PspFI CCCAGC 1 cut(s) 151
PspGI CCWGG 2 cut(s) 121, 299
PspPI GGNCC 2 cut(s) 93, 246
PvuII CAGCTG 1 cut(s) 155
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 2 cut(s) 237, 258
Sau3AI GATC 1 cut(s) 164
Sau96I GGNCC 2 cut(s) 93, 246
ScrFI CCNGG 2 cut(s) 123, 301
SetI ASST 6 cut(s) 44, 91, 108, 157, 195, 302
SinI GGWCC 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 160
SmoI CTYRAG 1 cut(s) 160
SphI GCATGC 1 cut(s) 189
StyD4I CCNGG 2 cut(s) 121, 299
TaqI TCGA 1 cut(s) 99
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 1 cut(s) 184
TseI GCWGC 2 cut(s) 236, 257
TspDTI ATGAA 2 cut(s) 133, 219
TspGWI ACGGA 1 cut(s) 13
TspRI CASTG 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 93
XceI RCATGY 1 cut(s) 189
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.