Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002346

Physical Location & Seq

Genomic Coordinates Forward (+)

15447765 .. 15448130

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00394670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGAGGGTTCGCATCGGGACGGCGGGGAAATCGGGTGTCGAAGCCGGTCGGGTAGAGTCCGGGTCGGTGGATGCGCGCTCTCCCGGACTCCTTTGGTGAGTTTAGTGGCGCAGAACAACCGGAGGTCCGATTTGAGAATCTTACTTGGAGTCATGAGAGCTTCGCTCGCCCTCCTCCACATTAGCATCTTCGACACTCGCCTCACCTCATCAAAGACACGAGATGGAGAGAGAGAGATTGACACGAGATGTATAGTGGTTCATCTCCGCCTTAGCCGGAGACTACGTCCACTTGAAAGTTGTACTAGTGCGTTGAGCCTTGCGGCCCAAGTGGATTACATGAGATGTAATGTGATGGATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF620

Protein Analysis

121

Amino Acids

13.44

Weight (kDa)

10.52

Isoelectric Point (pI)

56.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49840 AT3G19540
fragaria_vesca	FvH4_2g04650 FvH4_2g33400 FvH4_2g33400
malus_domestica	MD05G1094100.v1.1 MD08G1088800.v1.1 MD10G1100800.v1.1 MD15G1073800.v1.1
prunus_persica	Prupe.1G426600_v2.0.a1 Prupe.8G138900_v2.0.a1
pyrus_communis	pycom05g09310 pycom05g09320 pycom08g07220 pycom10g08650 pycom10g08660 pycom15g06890
rosa_chinensis	RchiOBHm_Chr6g0254271 RchiOBHm_Chr6g0309141
rosa_laevigata	RLG00000001453 RLG00000002547 RLG00000010587 RLG00000014930
rosa_multiflora	Rmu_sc0000780.1_g000016 Rmu_sc0003666.1_g000003 Rmu_sc0020102.1_g000003
rosa_roxburghii	Rroxscaffold_6G00394670 Rroxscaffold_7G00159610 Rroxscaffold_7G00210980
rosa_rugosa	Rorug05G0551600 Rorug06G0370000
rosa_samantha	Rh2DG361200 Rh6AG067900 Rh6AG482800 Rh6BG060800 Rh6BG491900 Rh6CG060700 Rh6CG496600 Rh6DG057800 Rh6DG483500
rosa_wichuraiana	Rw6G005960 Rw6G042040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	77
AciI	CCGC	3 cut(s)	24, 268, 323
AfaI	GTAC	1 cut(s)	304
AgsI	TTSAA	1 cut(s)	296
AhlI	ACTAGT	1 cut(s)	305
AluBI	AGCT	1 cut(s)	161
AluI	AGCT	1 cut(s)	161
Alw26I	GTCTC	1 cut(s)	274
AoxI	GGCC	1 cut(s)	324
AspLEI	GCGC	3 cut(s)	77, 79, 112
AspS9I	GGNCC	2 cut(s)	126, 325
AsuC2I	CCSGG	2 cut(s)	62, 85
AsuHPI	GGTGA	2 cut(s)	109, 196
AvaII	GGWCC	1 cut(s)	126
BauI	CACGAG	2 cut(s)	219, 244
BccI	CCATC	2 cut(s)	218, 349
BceAI	ACGGC	1 cut(s)	37
BcnI	CCSGG	2 cut(s)	62, 85
BcoDI	GTCTC	1 cut(s)	274
BcuI	ACTAGT	1 cut(s)	305
BfaI	CTAG	1 cut(s)	306
BisI	GCNGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	325
Bme1390I	CCNGG	2 cut(s)	62, 85
Bme18I	GGWCC	1 cut(s)	126
BmgT120I	GGNCC	2 cut(s)	126, 325
BmrFI	CCNGG	2 cut(s)	62, 85
BmsI	GCATC	3 cut(s)	22, 62, 195
BplI	GAGNNNNNCTC	2 cut(s)	150, 182
Bpu10I	CCTNAGC	1 cut(s)	272
BpuMI	CCSGG	2 cut(s)	62, 85
BsaWI	WCCGGW	1 cut(s)	120
BsaXI	ACNNNNNCTCC	2 cut(s)	271, 301
Bse118I	RCCGGY	1 cut(s)	45
BseGI	GGATG	2 cut(s)	77, 364
BsePI	GCGCGC	1 cut(s)	75
BseRI	GAGGAG	1 cut(s)	164
Bsh1236I	CGCG	1 cut(s)	77
Bsh1285I	CGRYCG	1 cut(s)	50
BshFI	GGCC	1 cut(s)	326
BsiEI	CGRYCG	1 cut(s)	50
BsiSI	CCGG	5 cut(s)	46, 61, 85, 121, 277
BslFI	GGGAC	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	274
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	1 cut(s)	326
BspACI	CCGC	3 cut(s)	24, 268, 323
BspANI	GGCC	1 cut(s)	326
BspFNI	CGCG	1 cut(s)	77
BspHI	TCATGA	1 cut(s)	153
BsrFI	RCCGGY	1 cut(s)	45
BssAI	RCCGGY	1 cut(s)	45
BssHII	GCGCGC	1 cut(s)	75
BssSI	CACGAG	2 cut(s)	219, 244
Bst2BI	CACGAG	2 cut(s)	219, 244
BstC8I	GCNNGC	2 cut(s)	77, 168
BstDEI	CTNAG	1 cut(s)	272
BstF5I	GGATG	2 cut(s)	77, 364
BstFNI	CGCG	1 cut(s)	77
BstHHI	GCGC	3 cut(s)	77, 79, 112
BstMAI	GTCTC	1 cut(s)	274
BstMCI	CGRYCG	1 cut(s)	50
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstSCI	CCNGG	2 cut(s)	60, 83
BstUI	CGCG	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	326
BtsCI	GGATG	2 cut(s)	77, 364
Cac8I	GCNNGC	2 cut(s)	77, 168
CciI	TCATGA	1 cut(s)	153
CfoI	GCGC	3 cut(s)	77, 79, 112
Cfr10I	RCCGGY	1 cut(s)	45
Cfr13I	GGNCC	2 cut(s)	126, 325
Csp6I	GTAC	1 cut(s)	303
CviAII	CATG	2 cut(s)	154, 340
CviJI	RGCY	5 cut(s)	45, 161, 276, 318, 326
CviKI_1	RGCY	5 cut(s)	45, 161, 276, 318, 326
CviQI	GTAC	1 cut(s)	303
DdeI	CTNAG	1 cut(s)	272
EciI	GGCGGA	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	126
FaeI	CATG	2 cut(s)	157, 343
FaiI	YATR	3 cut(s)	155, 254, 341
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	2 cut(s)	153, 339
FauI	CCCGC	1 cut(s)	17
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	1 cut(s)	84
Fsp4HI	GCNGC	1 cut(s)	324
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	3 cut(s)	76, 78, 111
GluI	GCNGC	1 cut(s)	324
HaeIII	GGCC	1 cut(s)	326
HapII	CCGG	5 cut(s)	46, 61, 85, 121, 277
HhaI	GCGC	3 cut(s)	77, 79, 112
Hin1II	CATG	2 cut(s)	157, 343
Hin6I	GCGC	3 cut(s)	75, 77, 110
HinP1I	GCGC	3 cut(s)	75, 77, 110
HinfI	GANTC	4 cut(s)	57, 88, 138, 150
HpaII	CCGG	5 cut(s)	46, 61, 85, 121, 277
HphI	GGTGA	2 cut(s)	109, 196
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	2 cut(s)	17, 154
Hpy8I	GTNNAC	1 cut(s)	290
HpyCH4IV	ACGT	1 cut(s)	286
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	1 cut(s)	272
HpySE526I	ACGT	1 cut(s)	286
Hsp92II	CATG	2 cut(s)	157, 343
HspAI	GCGC	3 cut(s)	75, 77, 110
LpnPI	CCDG	5 cut(s)	59, 74, 98, 134, 290
LweI	GCATC	3 cut(s)	22, 62, 195
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	1 cut(s)	286
MboII	GAAGA	1 cut(s)	181
MlyI	GAGTC	3 cut(s)	66, 82, 159
MnlI	CCTC	5 cut(s)	117, 182, 185, 212, 217
MseI	TTAA	1 cut(s)	364
MspI	CCGG	5 cut(s)	46, 61, 85, 121, 277
MspR9I	CCNGG	2 cut(s)	62, 85
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	1 cut(s)	167
NciI	CCSGG	2 cut(s)	62, 85
NlaIII	CATG	2 cut(s)	157, 343
PagI	TCATGA	1 cut(s)	153
PauI	GCGCGC	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	138
PflFI	GACNNNGTC	1 cut(s)	285
PfoI	TCCNGGA	1 cut(s)	83
PkrI	GCNGC	1 cut(s)	325
PleI	GAGTC	3 cut(s)	65, 82, 158
PpsI	GAGTC	3 cut(s)	65, 82, 158
PspPI	GGNCC	2 cut(s)	126, 325
PsyI	GACNNNGTC	1 cut(s)	285
PteI	GCGCGC	1 cut(s)	75
RsaI	GTAC	1 cut(s)	304
RsaNI	GTAC	1 cut(s)	303
SaqAI	TTAA	1 cut(s)	364
SatI	GCNGC	1 cut(s)	324
Sau96I	GGNCC	2 cut(s)	126, 325
SchI	GAGTC	3 cut(s)	66, 82, 159
ScrFI	CCNGG	2 cut(s)	62, 85
SetI	ASST	4 cut(s)	128, 163, 209, 289
SfaNI	GCATC	3 cut(s)	22, 62, 195
SinI	GGWCC	1 cut(s)	126
SpeI	ACTAGT	1 cut(s)	305
SsiI	CCGC	3 cut(s)	24, 268, 323
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	2 cut(s)	60, 83
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	2 cut(s)	40, 192
TatI	WGTACW	1 cut(s)	302
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	1 cut(s)	138
Tru1I	TTAA	1 cut(s)	364
Tru9I	TTAA	1 cut(s)	364
TspDTI	ATGAA	1 cut(s)	251
Tth111I	GACNNNGTC	1 cut(s)	285
VpaK11BI	GGWCC	1 cut(s)	126
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.