Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002346

Physical Location & Seq

Genomic Coordinates Forward (+)

51658517 .. 51659393

Gene Structure 877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0370000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCCGACAATGGTGGCGGACAAGTTGGTGGCTGGCCGAACAAGTTAGGGGCTAATCCACTATTAGGAATATCTTTTAGATTGACTCTGAGGGACTGTGACGGTTTCAGCCAACTCAAGATTGATGCACCGAATCTCCAATTTCTTGATGTTGTAGGTTCTTTTGAGGATGTGAGTATTGTGAATATGTTAAATGTTGTTGATGTTTCCATTTGTTTCAAGGAAAGTGGGATTCCTTGCAGTTCTGGCAGCTTGATCAAGTTTTTTGATGACCTGCCTCGTCTTCAGAGGCTCCAAATTAACTGGTACTTTTTGAAGTATTTGGCTGGTGATGCCTTGCTAAAAAAGCTGCCTAAACCATGTTTACATCTGAAATTTCTTTGCTTTAATGATCTGGAAGATATTTCAACTGCTCTTTGCCTTATAAGAAGCTCCCCTGCTCTAGAAAAGTTACAAATTTCTGCTATTGATTCCCCGTATTATCGACCTGATGTGGGAACAGTGAACTCTTGTTTGGATGACAATCACAGTTGCTCATTCACCCAACTGCGGCATGTGAAAATAACGGGGGTCTCTGGTGTTGAAGCTGACCTAAATTTTATCAGATTTCTGCTTTTAAGTTCACCTGTGCTTGAGACGATGACTGTTTGCGCTAAGTATGAGCAGCTTGATTTGGGTATTGAACCTTTGGATCTGGTAAAACAGTTGCTTCGTTTGAGGCGTGCATCACCGAGTTTGGAGATAATCTATTTAGACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF620

Protein Analysis

253

Amino Acids

28.13

Weight (kDa)

5.43

Isoelectric Point (pI)

41.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49840 AT3G19540
fragaria_vesca	FvH4_2g04650 FvH4_2g33400 FvH4_2g33400
malus_domestica	MD05G1094100.v1.1 MD08G1088800.v1.1 MD10G1100800.v1.1 MD15G1073800.v1.1
prunus_persica	Prupe.1G426600_v2.0.a1 Prupe.8G138900_v2.0.a1
pyrus_communis	pycom05g09310 pycom05g09320 pycom08g07220 pycom10g08650 pycom10g08660 pycom15g06890
rosa_chinensis	RchiOBHm_Chr6g0254271 RchiOBHm_Chr6g0309141
rosa_laevigata	RLG00000001453 RLG00000002547 RLG00000010587 RLG00000014930
rosa_multiflora	Rmu_sc0000780.1_g000016 Rmu_sc0003666.1_g000003 Rmu_sc0020102.1_g000003
rosa_roxburghii	Rroxscaffold_6G00394670 Rroxscaffold_7G00159610 Rroxscaffold_7G00210980
rosa_rugosa	Rorug05G0551600 Rorug06G0370000
rosa_samantha	Rh2DG361200 Rh6AG067900 Rh6AG482800 Rh6BG060800 Rh6BG491900 Rh6CG060700 Rh6CG496600 Rh6DG057800 Rh6DG483500
rosa_wichuraiana	Rw6G005960 Rw6G042040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	425
Acc36I	ACCTGC	1 cut(s)	282
AciI	CCGC	2 cut(s)	18, 550
AclWI	GGATC	1 cut(s)	699
AcoI	YGGCCR	2 cut(s)	3, 35
AcsI	RAATTY	3 cut(s)	374, 456, 595
AcuI	CTGAAG	1 cut(s)	269
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	3 cut(s)	65, 494, 549
AgsI	TTSAA	5 cut(s)	220, 316, 408, 584, 683
AjuI	GAANNNNNNNTTGG	2 cut(s)	497, 529
AluBI	AGCT	5 cut(s)	252, 349, 432, 587, 667
AluI	AGCT	5 cut(s)	252, 349, 432, 587, 667
Alw26I	GTCTC	2 cut(s)	577, 629
AlwI	GGATC	1 cut(s)	699
AoxI	GGCC	2 cut(s)	3, 35
ApeKI	GCWGC	3 cut(s)	249, 349, 664
ApoI	RAATTY	3 cut(s)	374, 456, 595
AspLEI	GCGC	1 cut(s)	653
AsuHPI	GGTGA	4 cut(s)	341, 532, 615, 720
BbsI	GAAGAC	1 cut(s)	275
BbvI	GCAGC	3 cut(s)	261, 336, 676
BclI	TGATCA	1 cut(s)	255
BcoDI	GTCTC	2 cut(s)	577, 629
BfaI	CTAG	1 cut(s)	443
BfuAI	ACCTGC	1 cut(s)	282
BisI	GCNGC	4 cut(s)	250, 350, 551, 665
BlsI	GCNGC	4 cut(s)	251, 351, 552, 666
BmiI	GGNNCC	1 cut(s)	293
BmsI	GCATC	3 cut(s)	115, 322, 734
BpiI	GAAGAC	1 cut(s)	275
BpuEI	CTTGAG	2 cut(s)	101, 653
BsaBI	GATNNNNATC	1 cut(s)	522
BsaI	GGTCTC	1 cut(s)	577
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 494, 549
Bse1I	ACTGG	1 cut(s)	308
Bse8I	GATNNNNATC	1 cut(s)	522
BseGI	GGATG	2 cut(s)	175, 523
BseJI	GATNNNNATC	1 cut(s)	522
BseLI	CCNNNNNNNGG	3 cut(s)	65, 494, 549
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	1 cut(s)	308
BseXI	GCAGC	3 cut(s)	261, 336, 676
BshFI	GGCC	2 cut(s)	5, 37
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	3 cut(s)	65, 494, 549
BsmAI	GTCTC	2 cut(s)	577, 629
BsmBI	CGTCTC	1 cut(s)	629
BsmFI	GGGAC	1 cut(s)	107
BsnI	GGCC	2 cut(s)	5, 37
Bso31I	GGTCTC	1 cut(s)	577
Bsp143I	GATC	3 cut(s)	255, 391, 691
BspACI	CCGC	2 cut(s)	18, 550
BspANI	GGCC	2 cut(s)	5, 37
BspCNI	CTCAG	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	293
BspMI	ACCTGC	1 cut(s)	282
BspPI	GGATC	1 cut(s)	699
BspTNI	GGTCTC	1 cut(s)	577
BsrI	ACTGG	1 cut(s)	308
BssMI	GATC	3 cut(s)	255, 391, 691
Bst4CI	ACNGT	6 cut(s)	98, 104, 502, 530, 646, 705
BstC8I	GCNNGC	2 cut(s)	35, 723
BstDEI	CTNAG	2 cut(s)	89, 654
BstF5I	GGATG	2 cut(s)	175, 523
BstHHI	GCGC	1 cut(s)	653
BstKTI	GATC	3 cut(s)	258, 394, 694
BstMAI	GTCTC	2 cut(s)	577, 629
BstMBI	GATC	3 cut(s)	255, 391, 691
BstMWI	GCNNNNNNNGC	3 cut(s)	246, 332, 346
BstNSI	RCATGY	1 cut(s)	557
BstV1I	GCAGC	3 cut(s)	261, 336, 676
BstV2I	GAAGAC	1 cut(s)	275
BstX2I	RGATCY	1 cut(s)	691
BstYI	RGATCY	1 cut(s)	691
BsuRI	GGCC	2 cut(s)	5, 37
BtsCI	GGATG	2 cut(s)	175, 523
BtsIMutI	CAGTG	1 cut(s)	507
BveI	ACCTGC	1 cut(s)	282
Cac8I	GCNNGC	2 cut(s)	35, 723
CfoI	GCGC	1 cut(s)	653
Csp6I	GTAC	1 cut(s)	307
CspCI	CAANNNNNGTGG	2 cut(s)	208, 243
CviAII	CATG	2 cut(s)	360, 554
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	2 cut(s)	89, 654
DpnI	GATC	3 cut(s)	257, 393, 693
DpnII	GATC	3 cut(s)	255, 391, 691
EaeI	YGGCCR	2 cut(s)	3, 35
EciI	GGCGGA	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	577
Eco57I	CTGAAG	1 cut(s)	269
Esp3I	CGTCTC	1 cut(s)	629
FaeI	CATG	2 cut(s)	363, 557
FaiI	YATR	5 cut(s)	188, 361, 425, 555, 660
FaqI	GGGAC	1 cut(s)	107
FatI	CATG	2 cut(s)	359, 553
FbaI	TGATCA	1 cut(s)	255
Fnu4HI	GCNGC	4 cut(s)	250, 350, 551, 665
FokI	GGATG	2 cut(s)	182, 530
Fsp4HI	GCNGC	4 cut(s)	250, 350, 551, 665
FspBI	CTAG	1 cut(s)	443
GlaI	GCGC	1 cut(s)	652
GluI	GCNGC	4 cut(s)	250, 350, 551, 665
HaeIII	GGCC	2 cut(s)	5, 37
HhaI	GCGC	1 cut(s)	653
Hin1II	CATG	2 cut(s)	363, 557
Hin6I	GCGC	1 cut(s)	651
HinP1I	GCGC	1 cut(s)	651
HinfI	GANTC	4 cut(s)	85, 133, 232, 470
HphI	GGTGA	4 cut(s)	341, 532, 615, 720
Hpy166II	GTNNAC	3 cut(s)	365, 505, 623
Hpy188I	TCNGA	4 cut(s)	90, 288, 372, 605
Hpy188III	TCNNGA	4 cut(s)	118, 146, 395, 443
Hpy8I	GTNNAC	3 cut(s)	365, 505, 623
HpyCH4III	ACNGT	6 cut(s)	98, 104, 502, 530, 646, 705
HpyCH4V	TGCA	3 cut(s)	128, 240, 725
HpyF10VI	GCNNNNNNNGC	3 cut(s)	246, 332, 346
HpyF3I	CTNAG	2 cut(s)	89, 654
Hsp92II	CATG	2 cut(s)	363, 557
HspAI	GCGC	1 cut(s)	651
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	3 cut(s)	255, 391, 691
LmnI	GCTCC	2 cut(s)	297, 437
Lsp1109I	GCAGC	3 cut(s)	261, 336, 676
LweI	GCATC	3 cut(s)	115, 322, 734
MaeI	CTAG	1 cut(s)	443
MaeIII	GTNAC	2 cut(s)	98, 450
MalI	GATC	3 cut(s)	257, 393, 693
MboI	GATC	3 cut(s)	255, 391, 691
MboII	GAAGA	2 cut(s)	275, 410
MflI	RGATCY	1 cut(s)	691
MluCI	AATT	5 cut(s)	140, 297, 374, 456, 595
MlyI	GAGTC	1 cut(s)	79
MnlI	CCTC	5 cut(s)	84, 160, 282, 288, 711
MseI	TTAA	4 cut(s)	191, 300, 387, 617
MwoI	GCNNNNNNNGC	3 cut(s)	246, 332, 346
NdeII	GATC	3 cut(s)	255, 391, 691
NlaIII	CATG	2 cut(s)	363, 557
NlaIV	GGNNCC	1 cut(s)	293
NmuCI	GTSAC	1 cut(s)	98
NspI	RCATGY	1 cut(s)	557
PcsI	WCGNNNNNNNCGW	1 cut(s)	718
PfeI	GAWTC	3 cut(s)	133, 232, 470
PkrI	GCNGC	4 cut(s)	251, 351, 552, 666
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PsiI	TTATAA	1 cut(s)	425
PspN4I	GGNNCC	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	691
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
SaqAI	TTAA	4 cut(s)	191, 300, 387, 617
SatI	GCNGC	4 cut(s)	250, 350, 551, 665
Sau3AI	GATC	3 cut(s)	255, 391, 691
SchI	GAGTC	1 cut(s)	79
SfaNI	GCATC	3 cut(s)	115, 322, 734
SmlI	CTYRAG	2 cut(s)	116, 632
SmoI	CTYRAG	2 cut(s)	116, 632
Sse9I	AATT	5 cut(s)	140, 297, 374, 456, 595
SsiI	CCGC	2 cut(s)	18, 550
SspMI	CTAG	1 cut(s)	443
TaaI	ACNGT	6 cut(s)	98, 104, 502, 530, 646, 705
TaqI	TCGA	1 cut(s)	484
TasI	AATT	5 cut(s)	140, 297, 374, 456, 595
TauI	GCSGC	1 cut(s)	553
TfiI	GAWTC	3 cut(s)	133, 232, 470
Tru1I	TTAA	4 cut(s)	191, 300, 387, 617
Tru9I	TTAA	4 cut(s)	191, 300, 387, 617
TscAI	CASTG	1 cut(s)	507
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	3 cut(s)	249, 349, 664
Tsp45I	GTSAC	1 cut(s)	98
TspRI	CASTG	1 cut(s)	507
XapI	RAATTY	3 cut(s)	374, 456, 595
XbaI	TCTAGA	1 cut(s)	442
XceI	RCATGY	1 cut(s)	557
XspI	CTAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.