Rh2DG361200

Protein of unknown function (DUF620)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002346
Physical Location & Seq
Forward (+)
51049677 .. 51073700
24024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG361200.1

Sequence Viewer

Length: 264 bp
ATGTCTGGTCTGCTCCGCCAGAAGAAGCAACATAGCCACCACGACTGTAACAGCCACGGCCAGCTGGTCGCGCAACTAGAGTCGTTGATCAGGAGATCTGGGAGCCTCAGGCCGATCATGGAGGGTTCGGATCTGGACGGCGAGGAAATCGGGCTGTTGAAGCAGGTCGGGTCAGGTCGGGTCTGGGCCAGTGGATACGCACTCTCCCGGACTCTTACGGTGAGTTCAATGGCTCATAACAACCGAAGAGGCTTTCGATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF620

Protein Analysis

87

Amino Acids

9.62

Weight (kDa)

10.38

Isoelectric Point (pI)

57.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 154
AccII CGCG 1 cut(s) 71
AciI CCGC 1 cut(s) 16
AclWI GGATC 1 cut(s) 138
AcoI YGGCCR 1 cut(s) 58
AgsI TTSAA 2 cut(s) 160, 228
AluBI AGCT 1 cut(s) 64
AluI AGCT 1 cut(s) 64
AlwI GGATC 1 cut(s) 138
AoxI GGCC 3 cut(s) 58, 110, 186
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 186
AsuC2I CCSGG 1 cut(s) 208
AsuHPI GGTGA 1 cut(s) 232
AxyI CCTNAGG 1 cut(s) 107
BceAI ACGGC 2 cut(s) 73, 154
BciVI GTATCC 1 cut(s) 188
BclI TGATCA 1 cut(s) 87
BcnI CCSGG 1 cut(s) 208
BfaI CTAG 1 cut(s) 77
BfuAI ACCTGC 1 cut(s) 154
BfuI GTATCC 1 cut(s) 188
BglII AGATCT 1 cut(s) 95
Bme1390I CCNGG 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 208
BpuMI CCSGG 1 cut(s) 208
BsaJI CCNNGG 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bse1I ACTGG 1 cut(s) 189
Bse21I CCTNAGG 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 55
BseMII CTCAG 1 cut(s) 121
BseNI ACTGG 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 3 cut(s) 60, 112, 188
BsiSI CCGG 1 cut(s) 208
BsnI GGCC 3 cut(s) 60, 112, 188
Bsp143I GATC 4 cut(s) 87, 95, 114, 130
BspACI CCGC 1 cut(s) 16
BspANI GGCC 3 cut(s) 60, 112, 188
BspCNI CTCAG 1 cut(s) 120
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 1 cut(s) 104
BspMI ACCTGC 1 cut(s) 154
BspPI GGATC 1 cut(s) 138
BsrI ACTGG 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 4 cut(s) 87, 95, 114, 130
Bst4CI ACNGT 2 cut(s) 47, 220
Bst6I CTCTTC 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 62
BstDEI CTNAG 1 cut(s) 107
BstDSI CCRYGG 1 cut(s) 55
BstFNI CGCG 1 cut(s) 71
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 4 cut(s) 90, 98, 117, 133
BstMBI GATC 4 cut(s) 87, 95, 114, 130
BstMWI GCNNNNNNNGC 2 cut(s) 70, 160
BstSCI CCNGG 1 cut(s) 206
BstUI CGCG 1 cut(s) 71
BstX2I RGATCY 2 cut(s) 95, 130
BstYI RGATCY 2 cut(s) 95, 130
Bsu36I CCTNAGG 1 cut(s) 107
BsuI GTATCC 1 cut(s) 188
BsuRI GGCC 3 cut(s) 60, 112, 188
BtgI CCRYGG 1 cut(s) 55
BtsIMutI CAGTG 1 cut(s) 196
BveI ACCTGC 1 cut(s) 154
Cac8I GCNNGC 1 cut(s) 62
CfoI GCGC 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 186
CviAII CATG 1 cut(s) 118
DdeI CTNAG 1 cut(s) 107
DpnI GATC 4 cut(s) 89, 97, 116, 132
DpnII GATC 4 cut(s) 87, 95, 114, 130
EaeI YGGCCR 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 241
EarI CTCTTC 1 cut(s) 241
EciI GGCGGA 1 cut(s) 5
Eco81I CCTNAGG 1 cut(s) 107
FaeI CATG 1 cut(s) 121
FaiI YATR 3 cut(s) 33, 119, 237
FatI CATG 1 cut(s) 117
FbaI TGATCA 1 cut(s) 87
FspBI CTAG 1 cut(s) 77
GlaI GCGC 1 cut(s) 72
HaeIII GGCC 3 cut(s) 60, 112, 188
HapII CCGG 1 cut(s) 208
HhaI GCGC 1 cut(s) 73
Hin1II CATG 1 cut(s) 121
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 2 cut(s) 80, 211
HpaII CCGG 1 cut(s) 208
HphI GGTGA 1 cut(s) 232
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 2 cut(s) 91, 134
HpyCH4III ACNGT 2 cut(s) 47, 220
HpyF10VI GCNNNNNNNGC 2 cut(s) 70, 160
HpyF3I CTNAG 1 cut(s) 107
Hsp92II CATG 1 cut(s) 121
HspAI GCGC 1 cut(s) 71
Ksp22I TGATCA 1 cut(s) 87
Kzo9I GATC 4 cut(s) 87, 95, 114, 130
LmnI GCTCC 2 cut(s) 18, 102
MaeI CTAG 1 cut(s) 77
MaeIII GTNAC 1 cut(s) 47
MalI GATC 4 cut(s) 89, 97, 116, 132
MboI GATC 4 cut(s) 87, 95, 114, 130
MboII GAAGA 2 cut(s) 34, 258
MflI RGATCY 2 cut(s) 95, 130
MlyI GAGTC 2 cut(s) 89, 205
MnlI CCTC 4 cut(s) 115, 116, 136, 242
MspA1I CMGCKG 1 cut(s) 64
MspI CCGG 1 cut(s) 208
MspR9I CCNGG 1 cut(s) 208
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 70, 160
NciI CCSGG 1 cut(s) 208
NdeII GATC 4 cut(s) 87, 95, 114, 130
NlaIII CATG 1 cut(s) 121
NlaIV GGNNCC 1 cut(s) 104
PfoI TCCNGGA 1 cut(s) 206
PleI GAGTC 2 cut(s) 88, 205
PpsI GAGTC 2 cut(s) 88, 205
PspN4I GGNNCC 1 cut(s) 104
PspPI GGNCC 1 cut(s) 186
PsuI RGATCY 2 cut(s) 95, 130
PvuII CAGCTG 1 cut(s) 64
Sau3AI GATC 4 cut(s) 87, 95, 114, 130
Sau96I GGNCC 1 cut(s) 186
SchI GAGTC 2 cut(s) 89, 205
ScrFI CCNGG 1 cut(s) 208
SetI ASST 3 cut(s) 66, 168, 178
SsiI CCGC 1 cut(s) 16
SspMI CTAG 1 cut(s) 77
StyD4I CCNGG 1 cut(s) 206
TaaI ACNGT 2 cut(s) 47, 220
TaqI TCGA 1 cut(s) 256
TscAI CASTG 1 cut(s) 196
TspRI CASTG 1 cut(s) 196
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.