Rorug05G0551600

Protein of unknown function (DUF620)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
73962115 .. 73965742
3628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0551600.1

Sequence Viewer

Length: 1731 bp
ATGGATAACAACAATGGGAGTCCTCCTCAAGGTGGAGAGCCTGCAATGGATGCAGGAGATTGGAGGTGCCAATTGCAGGTGGATTCGCGGCAAAGAATTGTCATTAAGATAATGGATACATTGAAGAGGCATATTCCTTACTCCAGTGAAGATGAACTCAAGAAAATTGCTGTTAGGTTTGAGGAAAAGATTTATGTGGTTGCCACAAGTCAGTCAGATTATCTACGGAAAATTTCTCTAAAGATGCTCACTATGGACACCAAGTCTCAGAACACAATGGCCAATTCTTTACAATCCAACTCTGCTGGGTCTTCTGGTATACAACTCCTATCAGAGAACATTCAGAATAACATTCCACCTGCTGAAATTCAAAGTTCTACTGGCTTACCATCCGTGCTACCCCATGACTCCGGGCCACAACAGCAAACATTGCCCCCACAGCATCAACAGCAACAATTTATAGGTCTGATGGATAACAACAATGTGATTCCTCCTCAAGGTGGAGAGCCTGCAATGGATGCAGGAGATTGGAGGAGCCAATTGCAGGCGGATTCGCGGCAAAGAATTGTCAATAAGATGATGGATACATTGAAGAGGAATCTTCCTTTCTCCAGTCAAGAGGGATTGGATGAACTCAAGAAAATTGCTGTTAGATTTGAGGAAAAGATTTATGTTGCTGCCACAAGTCAGTCAGATTATCTACGGAAAATTTCTCTAAAGATGCTCACTATGGACACCAAGTCTCAGAACACAATGGCGAATTCTTTACAATCCAACTCTGCTGGGTCTTCTGTTATGCAACCTCAAGTCGCCAATCAAGGACAACTCTTATCAGAGAACATTCAAAGTAACATTCCACCTGCTGGAGTTCAAAATTCTACTGGCTTATCATCTGCACTACCTCCTACCTCCGGGCCACAACAGCAAATATTGCCCCCACAACATCAACCGCAGCAATTAATTGCATCTTTGGATTCCACAGCCCAGACTGGGAATACAAATGGAGCTGATTGGAAAGAGGAGGTCTATCAAAAGTATCAAAAGAAGATGCAGAAGCTGTATATATTTCAACATGATGTACAACGACAGAAAGAGCAGCAGCAGCAGCTGCCTGGACAATTGCAGCCCGAGCTACACCAAATCAGTGTTGTTAACGACGTCAACACGAATGCCCTGTCATCATCACAGAGTGGGATTAACATGTTGCAGGCAAACGTTATTCCACCCAGTATTCTTCAGAAACCACAAGTATATCAGAATCAACTCCAAATCCAGCTACTACATCAGCGACAGATGCAGCTGCAGTTGATGGAGAAGCAGCAGAGAATTCAGCAACAGCAGCAAGCAAAGCAGCAGGTGCCTGGACTGTCACAGGCACACCAACTACCACAGCTTCACCAAATCAGTGTTGTTAAAGACGTGGATGCCTCGTCATCACAAACTGGGAGTAGTATGCTGCAGGCAAACATTGATCCCCCTCAGCCAAAATCTATTATTGTTGATAACAACCATCTGAAGCAAGATCAGGAGCAGAAAATGTTTCAGAATCAACTAAAGCAACCATATCAGCAGCAATGGATGCAGAAGCAGCAGATGCTTCAAGAAATGCAACAGCTGCAGATACAAAAACTACAACAGCAAGCAAAGCAGCAGCTGCATCATATTTATGTTATATATCTCATCTTTCTCACCTTTCTGTTGGGTGCTGCCTTTTTCGGGACTGGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

576

Amino Acids

64.92

Weight (kDa)

8.32

Isoelectric Point (pI)

66.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KIX_2 PF16987 19 - 95 4.2e-28 KIX domain
KIX_2 PF16987 175 - 254 2.6e-33 KIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 4 cut(s) 67, 367, 868, 1345
AatII GACGTC 1 cut(s) 1161
Acc36I ACCTGC 4 cut(s) 67, 367, 868, 1345
AccB1I GGYRCC 2 cut(s) 66, 1357
AccB7I CCANNNNNTGG 1 cut(s) 863
AccI GTMKAC 1 cut(s) 319
AccII CGCG 2 cut(s) 88, 556
AciI CCGC 4 cut(s) 88, 548, 556, 950
AclI AACGTT 1 cut(s) 1215
AclWI GGATC 1 cut(s) 1466
AcoI YGGCCR 1 cut(s) 279
AcsI RAATTY 6 cut(s) 231, 366, 708, 760, 874, 1326
AcuI CTGAAG 2 cut(s) 1220, 1535
AcyI GRCGYC 1 cut(s) 1158
AdeI CACNNNGTG 1 cut(s) 1190
AfaI GTAC 1 cut(s) 1080
AflIII ACRYGT 1 cut(s) 1200
AgsI TTSAA 7 cut(s) 124, 371, 592, 845, 872, 1070, 1601
AhdI GACNNNNNGTC 2 cut(s) 262, 739
AjiI CACGTC 1 cut(s) 1420
AjnI CCWGG 2 cut(s) 1111, 1360
AluBI AGCT 9 cut(s) 1007, 1057, 1108, 1132, 1276, 1300, 1393, 1615, 1654
AluI AGCT 9 cut(s) 1007, 1057, 1108, 1132, 1276, 1300, 1393, 1615, 1654
Alw26I GTCTC 2 cut(s) 270, 747
AlwI GGATC 1 cut(s) 1466
AlwNI CAGNNNCTG 3 cut(s) 1057, 1108, 1654
Ama87I CYCGRG 1 cut(s) 1127
AoxI GGCC 3 cut(s) 279, 413, 914
ApoI RAATTY 6 cut(s) 231, 366, 708, 760, 874, 1326
ArsI GACNNNNNNTTYG 2 cut(s) 1160, 1192
AseI ATTAAT 1 cut(s) 959
AspS9I GGNCC 2 cut(s) 413, 914
AsuC2I CCSGG 2 cut(s) 412, 913
AsuHPI GGTGA 2 cut(s) 1388, 1681
AvaI CYCGRG 1 cut(s) 1127
BalI TGGCCA 1 cut(s) 281
BanI GGYRCC 2 cut(s) 66, 1357
BbsI GAAGAC 2 cut(s) 303, 780
BbvCI CCTCAGC 1 cut(s) 1479
BccI CCATC 5 cut(s) 397, 463, 574, 1303, 1518
BciT130I CCWGG 2 cut(s) 1113, 1362
BciVI GTATCC 2 cut(s) 109, 577
BcnI CCSGG 2 cut(s) 412, 913
BcoDI GTCTC 2 cut(s) 270, 747
BfmI CTRYAG 3 cut(s) 1301, 1457, 1616
BfuAI ACCTGC 4 cut(s) 67, 367, 868, 1345
BfuI GTATCC 2 cut(s) 109, 577
Bme1390I CCNGG 4 cut(s) 412, 913, 1113, 1362
BmeRI GACNNNNNGTC 2 cut(s) 262, 739
BmeT110I CYCGRG 1 cut(s) 1127
BmgBI CACGTC 1 cut(s) 1420
BmgT120I GGNCC 2 cut(s) 413, 914
BmiI GGNNCC 3 cut(s) 68, 536, 1359
BmrFI CCNGG 4 cut(s) 412, 913, 1113, 1362
BmrI ACTGGG 3 cut(s) 999, 1221, 1452
BmuI ACTGGG 3 cut(s) 999, 1221, 1452
BpiI GAAGAC 2 cut(s) 303, 780
BplI GAGNNNNNCTC 2 cut(s) 10, 42
BpmI CTGGAG 3 cut(s) 127, 595, 885
Bpu10I CCTNAGC 1 cut(s) 1479
BpuEI CTTGAG 5 cut(s) 12, 143, 480, 620, 789
BpuMI CCSGG 2 cut(s) 412, 913
BsaHI GRCGYC 1 cut(s) 1158
Bse1I ACTGG 8 cut(s) 144, 385, 612, 886, 994, 1227, 1447, 1726
Bse3DI GCAATG 4 cut(s) 51, 428, 519, 1580
BseBI CCWGG 2 cut(s) 1113, 1362
BseGI GGATG 6 cut(s) 55, 389, 523, 634, 1429, 1584
BseMI GCAATG 4 cut(s) 51, 428, 519, 1580
BseMII CTCAG 3 cut(s) 281, 758, 1493
BseNI ACTGG 8 cut(s) 144, 385, 612, 886, 994, 1227, 1447, 1726
BseRI GAGGAG 4 cut(s) 15, 483, 547, 1034
BseYI CCCAGC 2 cut(s) 305, 782
BsgI GTGCAG 1 cut(s) 879
Bsh1236I CGCG 2 cut(s) 88, 556
BshFI GGCC 3 cut(s) 281, 415, 916
BshNI GGYRCC 2 cut(s) 66, 1357
BsiHKCI CYCGRG 1 cut(s) 1127
BsiSI CCGG 2 cut(s) 411, 912
BsmAI GTCTC 2 cut(s) 270, 747
BsmI GAATGC 1 cut(s) 1174
BsnI GGCC 3 cut(s) 281, 415, 916
BsoBI CYCGRG 1 cut(s) 1127
Bsp1407I TGTACA 1 cut(s) 1078
Bsp143I GATC 2 cut(s) 1471, 1522
BspACI CCGC 4 cut(s) 88, 548, 556, 950
BspANI GGCC 3 cut(s) 281, 415, 916
BspCNI CTCAG 3 cut(s) 280, 757, 1492
BspFNI CGCG 2 cut(s) 88, 556
BspLI GGNNCC 3 cut(s) 68, 536, 1359
BspMAI CTGCAG 3 cut(s) 1305, 1461, 1620
BspMI ACCTGC 4 cut(s) 67, 367, 868, 1345
BspPI GGATC 1 cut(s) 1466
BspT107I GGYRCC 2 cut(s) 66, 1357
BsrDI GCAATG 4 cut(s) 51, 428, 519, 1580
BsrGI TGTACA 1 cut(s) 1078
BsrI ACTGG 8 cut(s) 144, 385, 612, 886, 994, 1227, 1447, 1726
BssMI GATC 2 cut(s) 1471, 1522
BssNAI GTATAC 1 cut(s) 320
BssNI GRCGYC 1 cut(s) 1158
Bst1107I GTATAC 1 cut(s) 320
Bst2UI CCWGG 2 cut(s) 1113, 1362
Bst4CI ACNGT 1 cut(s) 1368
Bst6I CTCTTC 2 cut(s) 119, 587
BstACI GRCGYC 1 cut(s) 1158
BstAUI TGTACA 1 cut(s) 1078
BstC8I GCNNGC 7 cut(s) 42, 510, 546, 1209, 1344, 1461, 1641
BstDEI CTNAG 3 cut(s) 267, 744, 1479
BstENI CCTNNNNNAGG 2 cut(s) 27, 495
BstF5I GGATG 6 cut(s) 55, 389, 523, 634, 1429, 1584
BstFNI CGCG 2 cut(s) 88, 556
BstKTI GATC 2 cut(s) 1474, 1525
BstMAI GTCTC 2 cut(s) 270, 747
BstMBI GATC 2 cut(s) 1471, 1522
BstNI CCWGG 2 cut(s) 1113, 1362
BstNSI RCATGY 1 cut(s) 1204
BstSCI CCNGG 4 cut(s) 410, 911, 1111, 1360
BstSFI CTRYAG 3 cut(s) 1301, 1457, 1616
BstUI CGCG 2 cut(s) 88, 556
BstV2I GAAGAC 2 cut(s) 303, 780
BstZ17I GTATAC 1 cut(s) 320
BsuI GTATCC 2 cut(s) 109, 577
BsuRI GGCC 3 cut(s) 281, 415, 916
BtrI CACGTC 1 cut(s) 1420
BtsCI GGATG 6 cut(s) 55, 389, 523, 634, 1429, 1584
BtsIMutI CAGTG 3 cut(s) 151, 1150, 1411
BveI ACCTGC 4 cut(s) 67, 367, 868, 1345
Cac8I GCNNGC 7 cut(s) 42, 510, 546, 1209, 1344, 1461, 1641
CaiI CAGNNNCTG 3 cut(s) 1057, 1108, 1654
Cfr13I GGNCC 2 cut(s) 413, 914
Csp6I GTAC 1 cut(s) 1079
CviAII CATG 3 cut(s) 404, 1073, 1201
CviQI GTAC 1 cut(s) 1079
DdeI CTNAG 3 cut(s) 267, 744, 1479
DpnI GATC 2 cut(s) 1473, 1524
DpnII GATC 2 cut(s) 1471, 1522
DraIII CACNNNGTG 1 cut(s) 1190
DriI GACNNNNNGTC 2 cut(s) 262, 739
EaeI YGGCCR 1 cut(s) 279
Eam1104I CTCTTC 2 cut(s) 119, 587
Eam1105I GACNNNNNGTC 2 cut(s) 262, 739
EarI CTCTTC 2 cut(s) 119, 587
EciI GGCGGA 1 cut(s) 563
Eco57I CTGAAG 2 cut(s) 1220, 1535
Eco88I CYCGRG 1 cut(s) 1127
EcoNI CCTNNNNNAGG 2 cut(s) 27, 495
EcoRI GAATTC 2 cut(s) 760, 1326
EcoRII CCWGG 2 cut(s) 1111, 1360
FaeI CATG 3 cut(s) 407, 1076, 1204
FatI CATG 3 cut(s) 403, 1072, 1200
FblI GTMKAC 1 cut(s) 319
FokI GGATG 6 cut(s) 62, 376, 530, 641, 1436, 1591
GsaI CCCAGC 2 cut(s) 309, 786
GsuI CTGGAG 3 cut(s) 127, 595, 885
HaeIII GGCC 3 cut(s) 281, 415, 916
HapII CCGG 2 cut(s) 411, 912
Hin1I GRCGYC 1 cut(s) 1158
Hin1II CATG 3 cut(s) 407, 1076, 1204
HincII GTYRAC 2 cut(s) 1153, 1162
HindII GTYRAC 2 cut(s) 1153, 1162
HinfI GANTC 9 cut(s) 19, 83, 407, 487, 551, 598, 974, 1258, 1546
HpaI GTTAAC 1 cut(s) 1153
HpaII CCGG 2 cut(s) 411, 912
HphI GGTGA 2 cut(s) 1388, 1681
Hpy166II GTNNAC 3 cut(s) 320, 1153, 1162
Hpy188III TCNNGA 6 cut(s) 160, 617, 637, 1526, 1601, 1717
Hpy8I GTNNAC 3 cut(s) 320, 1153, 1162
Hpy99I CGWCG 1 cut(s) 1160
HpyCH4III ACNGT 1 cut(s) 1368
HpyCH4IV ACGT 3 cut(s) 1158, 1215, 1419
HpyF3I CTNAG 3 cut(s) 267, 744, 1479
HpySE526I ACGT 3 cut(s) 1158, 1215, 1419
Hsp92I GRCGYC 1 cut(s) 1158
Hsp92II CATG 3 cut(s) 407, 1076, 1204
KspAI GTTAAC 1 cut(s) 1153
Kzo9I GATC 2 cut(s) 1471, 1522
LmnI GCTCC 3 cut(s) 534, 1004, 1528
MaeII ACGT 3 cut(s) 1158, 1215, 1419
MaeIII GTNAC 2 cut(s) 848, 1368
MalI GATC 2 cut(s) 1473, 1524
MboI GATC 2 cut(s) 1471, 1522
MboII GAAGA 8 cut(s) 136, 161, 303, 593, 604, 780, 1057, 1226
MfeI CAATTG 3 cut(s) 71, 539, 1118
MlsI TGGCCA 1 cut(s) 281
MluNI TGGCCA 1 cut(s) 281
MlyI GAGTC 2 cut(s) 28, 401
MmeI TCCRAC 2 cut(s) 321, 798
Mox20I TGGCCA 1 cut(s) 281
MscI TGGCCA 1 cut(s) 281
MseI TTAA 5 cut(s) 105, 959, 1152, 1197, 1413
MslI CAYNNNNRTG 1 cut(s) 1665
Msp20I TGGCCA 1 cut(s) 281
MspA1I CMGCKG 4 cut(s) 1108, 1300, 1615, 1654
MspI CCGG 2 cut(s) 411, 912
MspR9I CCNGG 4 cut(s) 412, 913, 1113, 1362
MunI CAATTG 3 cut(s) 71, 539, 1118
Mva1269I GAATGC 1 cut(s) 1174
MvaI CCWGG 2 cut(s) 1113, 1362
MvnI CGCG 2 cut(s) 88, 556
NciI CCSGG 2 cut(s) 412, 913
NdeII GATC 2 cut(s) 1471, 1522
NlaIII CATG 3 cut(s) 407, 1076, 1204
NlaIV GGNNCC 3 cut(s) 68, 536, 1359
NmuCI GTSAC 1 cut(s) 1368
NspI RCATGY 1 cut(s) 1204
PaqCI CACCTGC 4 cut(s) 67, 367, 868, 1345
PciI ACATGT 1 cut(s) 1200
PctI GAATGC 1 cut(s) 1174
PfeI GAWTC 7 cut(s) 83, 487, 551, 598, 974, 1258, 1546
PflMI CCANNNNNTGG 1 cut(s) 863
PleI GAGTC 2 cut(s) 27, 401
PpsI GAGTC 2 cut(s) 27, 401
PscI ACATGT 1 cut(s) 1200
PshBI ATTAAT 1 cut(s) 959
Psp1406I AACGTT 1 cut(s) 1215
Psp6I CCWGG 2 cut(s) 1111, 1360
PspFI CCCAGC 2 cut(s) 305, 782
PspGI CCWGG 2 cut(s) 1111, 1360
PspN4I GGNNCC 3 cut(s) 68, 536, 1359
PspPI GGNCC 2 cut(s) 413, 914
PstI CTGCAG 3 cut(s) 1305, 1461, 1620
PstNI CAGNNNCTG 3 cut(s) 1057, 1108, 1654
PvuII CAGCTG 4 cut(s) 1108, 1300, 1615, 1654
RsaI GTAC 1 cut(s) 1080
RsaNI GTAC 1 cut(s) 1079
RseI CAYNNNNRTG 1 cut(s) 1665
SaqAI TTAA 5 cut(s) 105, 959, 1152, 1197, 1413
Sau3AI GATC 2 cut(s) 1471, 1522
Sau96I GGNCC 2 cut(s) 413, 914
SchI GAGTC 2 cut(s) 28, 401
ScrFI CCNGG 4 cut(s) 412, 913, 1113, 1362
SfcI CTRYAG 3 cut(s) 1301, 1457, 1616
SmiMI CAYNNNNRTG 1 cut(s) 1665
SmlI CTYRAG 5 cut(s) 27, 158, 495, 635, 804
SmoI CTYRAG 5 cut(s) 27, 158, 495, 635, 804
SsiI CCGC 4 cut(s) 88, 548, 556, 950
SspI AATATT 1 cut(s) 930
StyD4I CCNGG 4 cut(s) 410, 911, 1111, 1360
TaaI ACNGT 1 cut(s) 1368
TaiI ACGT 3 cut(s) 1161, 1218, 1422
TatI WGTACW 1 cut(s) 1078
TauI GCSGC 2 cut(s) 91, 559
TfiI GAWTC 7 cut(s) 83, 487, 551, 598, 974, 1258, 1546
Tru1I TTAA 5 cut(s) 105, 959, 1152, 1197, 1413
Tru9I TTAA 5 cut(s) 105, 959, 1152, 1197, 1413
TscAI CASTG 3 cut(s) 151, 1150, 1411
TseFI GTSAC 1 cut(s) 1368
Tsp45I GTSAC 1 cut(s) 1368
TspDTI ATGAA 2 cut(s) 168, 645
TspGWI ACGGA 3 cut(s) 241, 382, 718
TspRI CASTG 3 cut(s) 151, 1150, 1411
Van91I CCANNNNNTGG 1 cut(s) 863
VspI ATTAAT 1 cut(s) 959
XagI CCTNNNNNAGG 2 cut(s) 27, 495
XapI RAATTY 6 cut(s) 231, 366, 708, 760, 874, 1326
XceI RCATGY 1 cut(s) 1204
XmiI GTMKAC 1 cut(s) 319
ZraI GACGTC 1 cut(s) 1159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.