Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002346

Physical Location & Seq

Genomic Coordinates Forward (+)

15757650 .. 15762673

Gene Structure 5024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001453

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGTGATTCGTTTCTATCTGGCGAAGATTGTCTGCGTGCTAGAGCACCTCCATAGCATGGGGATCGCTTATCGGGATTTGAAGCCGGAGAACATGCTGATCCAACAGTCGGGTCACAAGCCTCAAGCACCTCCACAGCCAGAGATCGGCAGCAAACACCGCAGGAACCTCACGGGCTGGATCAACATTATCAATGAGAACAACAAGGCCGGGTTGAAGAAGGCCAAGTCTGCCCTGGTCAACCCGGTCAGCCGCCGCAAGCCGAGCTTCTCCGACAACGGCGAGCGGGCCAACTCGTTCGTCAGCACCGAGGAATACGTGTCCCCTGAGGTCGTCTGGGCGATGGTCACGAGGATTCTCACCTACGAGTGCCTCTACGGGACGACGCCATTTAAGGGGAAGAGCAGGAAGGAGACGTTCCGGAACGTGCTGACGAAGACGCCGGAGTTGGAAGATGAGAAACCGGGTCAGGAGGAAAGAATCAGGCTAAAGTCCGTAACTGACTCTCCACAAATAGAGAAGAAGCAAGGGTTCTTCTCTGCTCTTAAAGACGAGGTGGTTCGCGGCCTTAGCCCCTCTCACTCCAGGGCCACCAGCCCCGCCTGCTCCGGCTCCCCCATGTTGGGTCTGCTCCACCGAAAGAAGCAACACAGCCACCTTGACAATAGCGGCCACGGCCAGTTGGTCACTCAACTGGAGCCATTGATCAGGAGATCAGGGAGCCTCTGGCTAGTCATGGAGGGTTCAGATTCGGAAAGCGAGGAAATCGGGGAGTTGAAGCGGGTCGGCTCGGGTCTGGGCCAGTGGATGCGCACTCTCCCGGACTCCTTTGGTGAGTTCGGTGGCTCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0035670 GO:0036211 GO:0036290 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051302 GO:0051716 GO:0051782 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0080060 GO:0090567 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

285

Amino Acids

31.78

Weight (kDa)

9.26

Isoelectric Point (pI)

58.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	3 - 39	6e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49840 AT3G19540
fragaria_vesca	FvH4_2g04650 FvH4_2g33400 FvH4_2g33400
malus_domestica	MD05G1094100.v1.1 MD08G1088800.v1.1 MD10G1100800.v1.1 MD15G1073800.v1.1
prunus_persica	Prupe.1G426600_v2.0.a1 Prupe.8G138900_v2.0.a1
pyrus_communis	pycom05g09310 pycom05g09320 pycom08g07220 pycom10g08650 pycom10g08660 pycom15g06890
rosa_chinensis	RchiOBHm_Chr6g0254271 RchiOBHm_Chr6g0309141
rosa_laevigata	RLG00000001453 RLG00000002547 RLG00000010587 RLG00000014930
rosa_multiflora	Rmu_sc0000780.1_g000016 Rmu_sc0003666.1_g000003 Rmu_sc0020102.1_g000003
rosa_roxburghii	Rroxscaffold_6G00394670 Rroxscaffold_7G00159610 Rroxscaffold_7G00210980
rosa_rugosa	Rorug05G0551600 Rorug06G0370000
rosa_samantha	Rh2DG361200 Rh6AG067900 Rh6AG482800 Rh6BG060800 Rh6BG491900 Rh6CG060700 Rh6CG496600 Rh6DG057800 Rh6DG483500
rosa_wichuraiana	Rw6G005960 Rw6G042040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	812
AccB7I	CCANNNNNTGG	1 cut(s)	58
AccBSI	CCGCTC	1 cut(s)	286
AccII	CGCG	1 cut(s)	564
AccIII	TCCGGA	1 cut(s)	420
AciI	CCGC	8 cut(s)	160, 253, 256, 286, 564, 600, 669, 781
AclWI	GGATC	3 cut(s)	71, 94, 188
AcoI	YGGCCR	2 cut(s)	670, 676
AcyI	GRCGYC	2 cut(s)	386, 440
AfiI	CCNNNNNNNGG	6 cut(s)	58, 109, 146, 395, 622, 623
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	3 cut(s)	82, 217, 778
AjnI	CCWGG	2 cut(s)	234, 584
AluBI	AGCT	1 cut(s)	267
AluI	AGCT	1 cut(s)	267
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	407
AlwI	GGATC	3 cut(s)	71, 94, 188
Ama87I	CYCGRG	1 cut(s)	790
Aor13HI	TCCGGA	1 cut(s)	420
AoxI	GGCC	8 cut(s)	207, 222, 288, 565, 588, 670, 676, 799
ApeKI	GCWGC	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	813
AspS9I	GGNCC	3 cut(s)	288, 588, 799
AsuC2I	CCSGG	4 cut(s)	211, 245, 465, 821
AsuHPI	GGTGA	3 cut(s)	16, 352, 845
AvaI	CYCGRG	1 cut(s)	790
AxyI	CCTNAGG	1 cut(s)	327
BauI	CACGAG	1 cut(s)	349
BbsI	GAAGAC	1 cut(s)	443
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	162
BccI	CCATC	1 cut(s)	337
BceAI	ACGGC	2 cut(s)	295, 691
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BciT130I	CCWGG	2 cut(s)	236, 586
BclI	TGATCA	1 cut(s)	705
BcnI	CCSGG	4 cut(s)	211, 245, 465, 821
BcoDI	GTCTC	1 cut(s)	407
BfaI	CTAG	2 cut(s)	41, 731
BisI	GCNGC	5 cut(s)	151, 253, 256, 565, 670
BlsI	GCNGC	5 cut(s)	152, 254, 257, 566, 671
Bme1390I	CCNGG	6 cut(s)	211, 236, 245, 465, 586, 821
BmeT110I	CYCGRG	1 cut(s)	790
BmgT120I	GGNCC	3 cut(s)	288, 588, 799
BmiI	GGNNCC	4 cut(s)	167, 613, 699, 722
BmrFI	CCNGG	6 cut(s)	211, 236, 245, 465, 586, 821
BmsI	GCATC	1 cut(s)	798
BpiI	GAAGAC	1 cut(s)	443
BpmI	CTGGAG	2 cut(s)	568, 716
Bpu10I	CCTNAGC	1 cut(s)	569
BpuEI	CTTGAG	1 cut(s)	108
BpuMI	CCSGG	4 cut(s)	211, 245, 465, 821
BsaAI	YACGTR	1 cut(s)	319
BsaHI	GRCGYC	2 cut(s)	386, 440
BsaJI	CCNNGG	4 cut(s)	234, 309, 585, 673
BsaWI	WCCGGW	1 cut(s)	420
BsaXI	ACNNNNNCTCC	2 cut(s)	490, 520
Bsc4I	CCNNNNNNNGG	6 cut(s)	58, 109, 146, 395, 622, 623
Bse1I	ACTGG	3 cut(s)	679, 699, 802
Bse21I	CCTNAGG	1 cut(s)	327
BseAI	TCCGGA	1 cut(s)	420
BseBI	CCWGG	2 cut(s)	236, 586
BseDI	CCNNGG	4 cut(s)	234, 309, 585, 673
BseGI	GGATG	1 cut(s)	813
BseLI	CCNNNNNNNGG	6 cut(s)	58, 109, 146, 395, 622, 623
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	3 cut(s)	679, 699, 802
BseXI	GCAGC	1 cut(s)	162
Bsh1236I	CGCG	1 cut(s)	564
BshFI	GGCC	8 cut(s)	209, 224, 290, 567, 590, 672, 678, 801
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	790
BsiSI	CCGG	8 cut(s)	86, 210, 245, 421, 443, 464, 609, 821
BslFI	GGGAC	2 cut(s)	307, 394
BslI	CCNNNNNNNGG	6 cut(s)	58, 109, 146, 395, 622, 623
BsmAI	GTCTC	1 cut(s)	407
BsmBI	CGTCTC	1 cut(s)	407
BsmFI	GGGAC	2 cut(s)	307, 394
BsnI	GGCC	8 cut(s)	209, 224, 290, 567, 590, 672, 678, 801
BsoBI	CYCGRG	1 cut(s)	790
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp13I	TCCGGA	1 cut(s)	420
Bsp143I	GATC	6 cut(s)	63, 99, 144, 180, 705, 713
BspACI	CCGC	8 cut(s)	160, 253, 256, 286, 564, 600, 669, 781
BspANI	GGCC	8 cut(s)	209, 224, 290, 567, 590, 672, 678, 801
BspCNI	CTCAG	1 cut(s)	319
BspEI	TCCGGA	1 cut(s)	420
BspFNI	CGCG	1 cut(s)	564
BspLI	GGNNCC	4 cut(s)	167, 613, 699, 722
BspPI	GGATC	3 cut(s)	71, 94, 188
BspQI	GCTCTTC	1 cut(s)	395
BsrBI	CCGCTC	1 cut(s)	286
BsrI	ACTGG	3 cut(s)	679, 699, 802
BssECI	CCNNGG	4 cut(s)	234, 309, 585, 673
BssMI	GATC	6 cut(s)	63, 99, 144, 180, 705, 713
BssNI	GRCGYC	2 cut(s)	386, 440
BssSI	CACGAG	1 cut(s)	349
Bst2BI	CACGAG	1 cut(s)	349
Bst2UI	CCWGG	2 cut(s)	236, 586
Bst4CI	ACNGT	1 cut(s)	108
Bst6I	CTCTTC	1 cut(s)	395
BstACI	GRCGYC	2 cut(s)	386, 440
BstBAI	YACGTR	1 cut(s)	319
BstC8I	GCNNGC	5 cut(s)	38, 260, 284, 288, 604
BstDEI	CTNAG	3 cut(s)	327, 569, 847
BstDSI	CCRYGG	1 cut(s)	673
BstF5I	GGATG	1 cut(s)	813
BstFNI	CGCG	1 cut(s)	564
BstHHI	GCGC	1 cut(s)	813
BstKTI	GATC	6 cut(s)	66, 102, 147, 183, 708, 716
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	6 cut(s)	63, 99, 144, 180, 705, 713
BstMWI	GCNNNNNNNGC	6 cut(s)	159, 230, 264, 570, 603, 675
BstNI	CCWGG	2 cut(s)	236, 586
BstNSI	RCATGY	1 cut(s)	97
BstSCI	CCNGG	6 cut(s)	209, 234, 243, 463, 584, 819
BstUI	CGCG	1 cut(s)	564
BstV1I	GCAGC	1 cut(s)	162
BstV2I	GAAGAC	1 cut(s)	443
Bsu36I	CCTNAGG	1 cut(s)	327
BsuRI	GGCC	8 cut(s)	209, 224, 290, 567, 590, 672, 678, 801
BtgI	CCRYGG	1 cut(s)	673
BtgZI	GCGATG	1 cut(s)	356
BtsCI	GGATG	1 cut(s)	813
BtsIMutI	CAGTG	1 cut(s)	809
Cac8I	GCNNGC	5 cut(s)	38, 260, 284, 288, 604
CfoI	GCGC	1 cut(s)	813
Cfr13I	GGNCC	3 cut(s)	288, 588, 799
CseI	GACGC	2 cut(s)	394, 448
CviAII	CATG	4 cut(s)	58, 94, 619, 736
DdeI	CTNAG	3 cut(s)	327, 569, 847
DpnI	GATC	6 cut(s)	65, 101, 146, 182, 707, 715
DpnII	GATC	6 cut(s)	63, 99, 144, 180, 705, 713
EaeI	YGGCCR	2 cut(s)	670, 676
Eam1104I	CTCTTC	1 cut(s)	395
EarI	CTCTTC	1 cut(s)	395
Eco81I	CCTNAGG	1 cut(s)	327
Eco88I	CYCGRG	1 cut(s)	790
EcoRII	CCWGG	2 cut(s)	234, 584
Esp3I	CGTCTC	1 cut(s)	407
FaeI	CATG	4 cut(s)	61, 97, 622, 739
FaiI	YATR	5 cut(s)	54, 59, 95, 620, 737
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FaqI	GGGAC	2 cut(s)	307, 394
FatI	CATG	4 cut(s)	57, 93, 618, 735
FauI	CCCGC	3 cut(s)	279, 607, 774
FbaI	TGATCA	1 cut(s)	705
Fnu4HI	GCNGC	5 cut(s)	151, 253, 256, 565, 670
FokI	GGATG	1 cut(s)	820
Fsp4HI	GCNGC	5 cut(s)	151, 253, 256, 565, 670
FspAI	RTGCGCAY	1 cut(s)	812
FspBI	CTAG	2 cut(s)	41, 731
FspI	TGCGCA	1 cut(s)	812
GlaI	GCGC	1 cut(s)	812
GluI	GCNGC	5 cut(s)	151, 253, 256, 565, 670
GsuI	CTGGAG	2 cut(s)	568, 716
HaeIII	GGCC	8 cut(s)	209, 224, 290, 567, 590, 672, 678, 801
HapII	CCGG	8 cut(s)	86, 210, 245, 421, 443, 464, 609, 821
HgaI	GACGC	2 cut(s)	394, 448
HhaI	GCGC	1 cut(s)	813
Hin1I	GRCGYC	2 cut(s)	386, 440
Hin1II	CATG	4 cut(s)	61, 97, 622, 739
Hin6I	GCGC	1 cut(s)	811
HinP1I	GCGC	1 cut(s)	811
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	6 cut(s)	7, 355, 480, 503, 749, 824
HpaII	CCGG	8 cut(s)	86, 210, 245, 421, 443, 464, 609, 821
HphI	GGTGA	3 cut(s)	16, 352, 845
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	4 cut(s)	274, 748, 754, 850
Hpy188III	TCNNGA	5 cut(s)	74, 349, 421, 470, 709
Hpy8I	GTNNAC	1 cut(s)	241
Hpy99I	CGWCG	1 cut(s)	388
HpyAV	CCTTC	2 cut(s)	214, 403
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4IV	ACGT	3 cut(s)	318, 416, 426
HpyF10VI	GCNNNNNNNGC	6 cut(s)	159, 230, 264, 570, 603, 675
HpyF3I	CTNAG	3 cut(s)	327, 569, 847
HpySE526I	ACGT	3 cut(s)	318, 416, 426
Hsp92I	GRCGYC	2 cut(s)	386, 440
Hsp92II	CATG	4 cut(s)	61, 97, 622, 739
HspAI	GCGC	1 cut(s)	811
Kpn2I	TCCGGA	1 cut(s)	420
Ksp22I	TGATCA	1 cut(s)	705
Kzo9I	GATC	6 cut(s)	63, 99, 144, 180, 705, 713
LguI	GCTCTTC	1 cut(s)	395
LmnI	GCTCC	5 cut(s)	611, 617, 636, 697, 720
Lsp1109I	GCAGC	1 cut(s)	162
LweI	GCATC	1 cut(s)	798
MaeI	CTAG	2 cut(s)	41, 731
MaeII	ACGT	3 cut(s)	318, 416, 426
MaeIII	GTNAC	4 cut(s)	113, 346, 496, 685
MalI	GATC	6 cut(s)	65, 101, 146, 182, 707, 715
MbiI	CCGCTC	1 cut(s)	286
MboI	GATC	6 cut(s)	63, 99, 144, 180, 705, 713
MboII	GAAGA	7 cut(s)	37, 229, 412, 448, 464, 526, 532
MhlI	GDGCHC	1 cut(s)	48
MlyI	GAGTC	2 cut(s)	497, 818
MmeI	TCCRAC	3 cut(s)	127, 297, 429
MroI	TCCGGA	1 cut(s)	420
MseI	TTAA	2 cut(s)	393, 546
MspI	CCGG	8 cut(s)	86, 210, 245, 421, 443, 464, 609, 821
MspR9I	CCNGG	6 cut(s)	211, 236, 245, 465, 586, 821
MvaI	CCWGG	2 cut(s)	236, 586
MvnI	CGCG	1 cut(s)	564
MwoI	GCNNNNNNNGC	6 cut(s)	159, 230, 264, 570, 603, 675
NciI	CCSGG	4 cut(s)	211, 245, 465, 821
NdeII	GATC	6 cut(s)	63, 99, 144, 180, 705, 713
NlaIII	CATG	4 cut(s)	61, 97, 622, 739
NlaIV	GGNNCC	4 cut(s)	167, 613, 699, 722
NmeAIII	GCCGAG	1 cut(s)	288
NmuCI	GTSAC	3 cut(s)	113, 346, 685
NsbI	TGCGCA	1 cut(s)	812
NspI	RCATGY	1 cut(s)	97
PciSI	GCTCTTC	1 cut(s)	395
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PfeI	GAWTC	4 cut(s)	7, 355, 480, 749
PflMI	CCANNNNNTGG	1 cut(s)	58
PfoI	TCCNGGA	1 cut(s)	819
PkrI	GCNGC	5 cut(s)	152, 254, 257, 566, 671
PleI	GAGTC	2 cut(s)	497, 818
PpsI	GAGTC	2 cut(s)	497, 818
Ppu21I	YACGTR	1 cut(s)	319
Psp6I	CCWGG	2 cut(s)	234, 584
PspGI	CCWGG	2 cut(s)	234, 584
PspN4I	GGNNCC	4 cut(s)	167, 613, 699, 722
PspPI	GGNCC	3 cut(s)	288, 588, 799
SapI	GCTCTTC	1 cut(s)	395
SaqAI	TTAA	2 cut(s)	393, 546
SatI	GCNGC	5 cut(s)	151, 253, 256, 565, 670
Sau3AI	GATC	6 cut(s)	63, 99, 144, 180, 705, 713
Sau96I	GGNCC	3 cut(s)	288, 588, 799
SchI	GAGTC	2 cut(s)	497, 818
ScrFI	CCNGG	6 cut(s)	211, 236, 245, 465, 586, 821
SduI	GDGCHC	1 cut(s)	48
SfaNI	GCATC	1 cut(s)	798
SmlI	CTYRAG	1 cut(s)	123
SmoI	CTYRAG	1 cut(s)	123
SsiI	CCGC	8 cut(s)	160, 253, 256, 286, 564, 600, 669, 781
SspMI	CTAG	2 cut(s)	41, 731
StyD4I	CCNGG	6 cut(s)	209, 234, 243, 463, 584, 819
TaaI	ACNGT	1 cut(s)	108
TaiI	ACGT	3 cut(s)	321, 419, 429
TauI	GCSGC	4 cut(s)	255, 258, 567, 672
TfiI	GAWTC	4 cut(s)	7, 355, 480, 749
Tru1I	TTAA	2 cut(s)	393, 546
Tru9I	TTAA	2 cut(s)	393, 546
TscAI	CASTG	1 cut(s)	809
TseFI	GTSAC	3 cut(s)	113, 346, 685
TseI	GCWGC	1 cut(s)	150
Tsp45I	GTSAC	3 cut(s)	113, 346, 685
TspGWI	ACGGA	1 cut(s)	484
TspRI	CASTG	1 cut(s)	809
Van91I	CCANNNNNTGG	1 cut(s)	58
XceI	RCATGY	1 cut(s)	97
XcmI	CCANNNNNNNNNTGG	1 cut(s)	232
XspI	CTAG	2 cut(s)	41, 731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.