Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002346

Physical Location & Seq

Genomic Coordinates Reverse (-)

36133294 .. 36135646

Gene Structure 2353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002547

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGAGCCGTTGATCGGGAGATCCGGGAGCCTCAAGCCAGTCATGGAGGGTTCAGATTTGGAAGGAGATGAAATCAGGGATTTGAAGCGGGTCGGGTCTGGGCCAGTGGATACGCACTCTCTCGGACTCCTTCGCCTTCGCGACCTGTGCCACCACGACCCATGCCGCCTCGACCCACACCGCCTTGACCTAAGCAGCCCCGGCCGGCGTTGCTATGAAGCAAGCAGCTATGCAGTGCTCCACGGTCCAAAGCGCTACGATCCCAATGGCCCGCCGCCGGTCCTAGAAGCCTCTGACTCACCCATAAGCTCCAAAACCCCCTCGCTGGATCTACACAGAAAACGACACCCAGAGATACAGCCCAAATCCGCCGCCTACCATCCTGGCAAAACCACGAGCCAACACCTTCTCTCCAGACCTCAGCCTAGGGCAATGAGGTACCAGTCCAGTAGCCAACACAGGGACAACACAGTGAAGCCGGCGCTACCCATGGCCGTAGCCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF620

Protein Analysis

169

Amino Acids

18.6

Weight (kDa)

9.4

Isoelectric Point (pI)

57.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49840 AT3G19540
fragaria_vesca	FvH4_2g04650 FvH4_2g33400 FvH4_2g33400
malus_domestica	MD05G1094100.v1.1 MD08G1088800.v1.1 MD10G1100800.v1.1 MD15G1073800.v1.1
prunus_persica	Prupe.1G426600_v2.0.a1 Prupe.8G138900_v2.0.a1
pyrus_communis	pycom05g09310 pycom05g09320 pycom08g07220 pycom10g08650 pycom10g08660 pycom15g06890
rosa_chinensis	RchiOBHm_Chr6g0254271 RchiOBHm_Chr6g0309141
rosa_laevigata	RLG00000001453 RLG00000002547 RLG00000010587 RLG00000014930
rosa_multiflora	Rmu_sc0000780.1_g000016 Rmu_sc0003666.1_g000003 Rmu_sc0020102.1_g000003
rosa_roxburghii	Rroxscaffold_6G00394670 Rroxscaffold_7G00159610 Rroxscaffold_7G00210980
rosa_rugosa	Rorug05G0551600 Rorug06G0370000
rosa_samantha	Rh2DG361200 Rh6AG067900 Rh6AG482800 Rh6BG060800 Rh6BG491900 Rh6CG060700 Rh6CG496600 Rh6DG057800 Rh6DG483500
rosa_wichuraiana	Rw6G005960 Rw6G042040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	438
AccB1I	GGYRCC	1 cut(s)	438
AccII	CGCG	1 cut(s)	141
AciI	CCGC	7 cut(s)	88, 166, 181, 272, 275, 369, 372
AclWI	GGATC	3 cut(s)	15, 254, 336
AcoI	YGGCCR	2 cut(s)	202, 492
AfaI	GTAC	1 cut(s)	440
AfeI	AGCGCT	1 cut(s)	254
AfiI	CCNNNNNNNGG	4 cut(s)	14, 277, 325, 460
AgsI	TTSAA	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	2 cut(s)	228, 309
AluI	AGCT	2 cut(s)	228, 309
Alw21I	GWGCWC	1 cut(s)	240
AlwI	GGATC	3 cut(s)	15, 254, 336
Aor51HI	AGCGCT	1 cut(s)	254
AoxI	GGCC	4 cut(s)	101, 202, 268, 492
ApeKI	GCWGC	2 cut(s)	195, 225
Asp718I	GGTACC	1 cut(s)	438
AspA2I	CCTAGG	1 cut(s)	425
AspLEI	GCGC	2 cut(s)	255, 484
AspS9I	GGNCC	4 cut(s)	101, 245, 269, 280
AsuC2I	CCSGG	2 cut(s)	25, 201
AsuHPI	GGTGA	1 cut(s)	291
AvaII	GGWCC	2 cut(s)	245, 280
AvrII	CCTAGG	1 cut(s)	425
BanI	GGYRCC	1 cut(s)	438
BauI	CACGAG	1 cut(s)	394
Bbv12I	GWGCWC	1 cut(s)	240
BbvCI	CCTCAGC	1 cut(s)	420
BbvI	GCAGC	2 cut(s)	207, 237
BccI	CCATC	1 cut(s)	387
BceAI	ACGGC	1 cut(s)	479
BciT130I	CCWGG	1 cut(s)	384
BciVI	GTATCC	1 cut(s)	103
BcnI	CCSGG	2 cut(s)	25, 201
BfaI	CTAG	2 cut(s)	284, 426
BfoI	RGCGCY	2 cut(s)	256, 485
BfuI	GTATCC	1 cut(s)	103
BisI	GCNGC	5 cut(s)	166, 196, 226, 275, 372
BlnI	CCTAGG	1 cut(s)	425
BlsI	GCNGC	5 cut(s)	167, 197, 227, 276, 373
Bme1390I	CCNGG	3 cut(s)	25, 201, 384
Bme18I	GGWCC	2 cut(s)	245, 280
BmgT120I	GGNCC	4 cut(s)	101, 245, 269, 280
BmiI	GGNNCC	3 cut(s)	6, 29, 440
BmrFI	CCNGG	3 cut(s)	25, 201, 384
BpmI	CTGGAG	1 cut(s)	397
Bpu10I	CCTNAGC	2 cut(s)	191, 420
BpuEI	CTTGAG	1 cut(s)	17
BpuMI	CCSGG	2 cut(s)	25, 201
BsaJI	CCNNGG	4 cut(s)	199, 241, 425, 489
BsaXI	ACNNNNNCTCC	2 cut(s)	395, 425
Bsc4I	CCNNNNNNNGG	4 cut(s)	14, 277, 325, 460
Bse118I	RCCGGY	3 cut(s)	204, 277, 478
Bse1I	ACTGG	4 cut(s)	38, 104, 442, 447
Bse3DI	GCAATG	1 cut(s)	438
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	4 cut(s)	199, 241, 425, 489
BseGI	GGATG	1 cut(s)	379
BseLI	CCNNNNNNNGG	4 cut(s)	14, 277, 325, 460
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	1 cut(s)	434
BseNI	ACTGG	4 cut(s)	38, 104, 442, 447
BseX3I	CGGCCG	1 cut(s)	202
BseXI	GCAGC	2 cut(s)	207, 237
Bsh1236I	CGCG	1 cut(s)	141
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	4 cut(s)	103, 204, 270, 494
BshNI	GGYRCC	1 cut(s)	438
BsiEI	CGRYCG	1 cut(s)	205
BsiHKAI	GWGCWC	1 cut(s)	240
BsiSI	CCGG	5 cut(s)	24, 201, 205, 278, 479
BslFI	GGGAC	1 cut(s)	476
BslI	CCNNNNNNNGG	4 cut(s)	14, 277, 325, 460
BsmFI	GGGAC	1 cut(s)	476
BsnI	GGCC	4 cut(s)	103, 204, 270, 494
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	4 cut(s)	12, 20, 259, 328
Bsp19I	CCATGG	1 cut(s)	489
Bsp68I	TCGCGA	1 cut(s)	141
BspACI	CCGC	7 cut(s)	88, 166, 181, 272, 275, 369, 372
BspANI	GGCC	4 cut(s)	103, 204, 270, 494
BspCNI	CTCAG	1 cut(s)	433
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	3 cut(s)	6, 29, 440
BspPI	GGATC	3 cut(s)	15, 254, 336
BspT107I	GGYRCC	1 cut(s)	438
BsrDI	GCAATG	1 cut(s)	438
BsrFI	RCCGGY	3 cut(s)	204, 277, 478
BsrI	ACTGG	4 cut(s)	38, 104, 442, 447
BssAI	RCCGGY	3 cut(s)	204, 277, 478
BssECI	CCNNGG	4 cut(s)	199, 241, 425, 489
BssMI	GATC	4 cut(s)	12, 20, 259, 328
BssSI	CACGAG	1 cut(s)	394
BssT1I	CCWWGG	2 cut(s)	425, 489
Bst2BI	CACGAG	1 cut(s)	394
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	2 cut(s)	245, 472
BstC8I	GCNNGC	4 cut(s)	206, 223, 272, 480
BstDEI	CTNAG	2 cut(s)	191, 420
BstDSI	CCRYGG	2 cut(s)	241, 489
BstF5I	GGATG	1 cut(s)	379
BstFNI	CGCG	1 cut(s)	141
BstH2I	RGCGCY	2 cut(s)	256, 485
BstHHI	GCGC	2 cut(s)	255, 484
BstKTI	GATC	4 cut(s)	15, 23, 262, 331
BstMBI	GATC	4 cut(s)	12, 20, 259, 328
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	3 cut(s)	147, 201, 210
BstNI	CCWGG	1 cut(s)	384
BstSCI	CCNGG	3 cut(s)	23, 199, 382
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	2 cut(s)	207, 237
BstX2I	RGATCY	2 cut(s)	20, 328
BstYI	RGATCY	2 cut(s)	20, 328
BstZI	CGGCCG	1 cut(s)	202
BsuI	GTATCC	1 cut(s)	103
BsuRI	GGCC	4 cut(s)	103, 204, 270, 494
BtgI	CCRYGG	2 cut(s)	241, 489
BtsCI	GGATG	1 cut(s)	379
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	3 cut(s)	111, 240, 477
BtuMI	TCGCGA	1 cut(s)	141
Cac8I	GCNNGC	4 cut(s)	206, 223, 272, 480
CfoI	GCGC	2 cut(s)	255, 484
Cfr10I	RCCGGY	3 cut(s)	204, 277, 478
Cfr13I	GGNCC	4 cut(s)	101, 245, 269, 280
Csp6I	GTAC	1 cut(s)	439
CviAII	CATG	3 cut(s)	43, 162, 490
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	2 cut(s)	191, 420
DpnI	GATC	4 cut(s)	14, 22, 261, 330
DpnII	GATC	4 cut(s)	12, 20, 259, 328
EaeI	YGGCCR	2 cut(s)	202, 492
EagI	CGGCCG	1 cut(s)	202
EciI	GGCGGA	1 cut(s)	358
EclXI	CGGCCG	1 cut(s)	202
Eco130I	CCWWGG	2 cut(s)	425, 489
Eco47I	GGWCC	2 cut(s)	245, 280
Eco47III	AGCGCT	1 cut(s)	254
Eco52I	CGGCCG	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	382
EcoT14I	CCWWGG	2 cut(s)	425, 489
ErhI	CCWWGG	2 cut(s)	425, 489
FaeI	CATG	3 cut(s)	46, 165, 493
FaiI	YATR	6 cut(s)	44, 163, 216, 231, 305, 491
FaqI	GGGAC	1 cut(s)	476
FatI	CATG	3 cut(s)	42, 161, 489
FauI	CCCGC	2 cut(s)	81, 279
Fnu4HI	GCNGC	5 cut(s)	166, 196, 226, 275, 372
FokI	GGATG	1 cut(s)	366
Fsp4HI	GCNGC	5 cut(s)	166, 196, 226, 275, 372
FspBI	CTAG	2 cut(s)	284, 426
GlaI	GCGC	2 cut(s)	254, 483
GluI	GCNGC	5 cut(s)	166, 196, 226, 275, 372
GsuI	CTGGAG	1 cut(s)	397
HaeII	RGCGCY	2 cut(s)	256, 485
HaeIII	GGCC	4 cut(s)	103, 204, 270, 494
HapII	CCGG	5 cut(s)	24, 201, 205, 278, 479
HhaI	GCGC	2 cut(s)	255, 484
Hin1II	CATG	3 cut(s)	46, 165, 493
Hin6I	GCGC	2 cut(s)	253, 482
HinP1I	GCGC	2 cut(s)	253, 482
HinfI	GANTC	2 cut(s)	126, 296
HpaII	CCGG	5 cut(s)	24, 201, 205, 278, 479
HphI	GGTGA	1 cut(s)	291
Hpy188I	TCNGA	3 cut(s)	55, 125, 295
Hpy188III	TCNNGA	3 cut(s)	16, 140, 414
HpyAV	CCTTC	4 cut(s)	56, 140, 146, 416
HpyCH4III	ACNGT	2 cut(s)	245, 472
HpyCH4V	TGCA	1 cut(s)	233
HpyF10VI	GCNNNNNNNGC	3 cut(s)	147, 201, 210
HpyF3I	CTNAG	2 cut(s)	191, 420
Hsp92II	CATG	3 cut(s)	46, 165, 493
HspAI	GCGC	2 cut(s)	253, 482
KpnI	GGTACC	1 cut(s)	442
KroI	GCCGGC	2 cut(s)	204, 478
KroNI	GCCGGC	2 cut(s)	206, 480
Kzo9I	GATC	4 cut(s)	12, 20, 259, 328
LmnI	GCTCC	4 cut(s)	4, 27, 243, 314
Lsp1109I	GCAGC	2 cut(s)	207, 237
MaeI	CTAG	2 cut(s)	284, 426
MalI	GATC	4 cut(s)	14, 22, 261, 330
MboI	GATC	4 cut(s)	12, 20, 259, 328
MflI	RGATCY	2 cut(s)	20, 328
MhlI	GDGCHC	1 cut(s)	240
MlyI	GAGTC	2 cut(s)	120, 290
MnlI	CCTC	7 cut(s)	40, 41, 179, 301, 331, 429, 429
MroNI	GCCGGC	2 cut(s)	204, 478
MspI	CCGG	5 cut(s)	24, 201, 205, 278, 479
MspR9I	CCNGG	3 cut(s)	25, 201, 384
MvaI	CCWGG	1 cut(s)	384
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	3 cut(s)	147, 201, 210
NaeI	GCCGGC	2 cut(s)	206, 480
NciI	CCSGG	2 cut(s)	25, 201
NcoI	CCATGG	1 cut(s)	489
NdeII	GATC	4 cut(s)	12, 20, 259, 328
NgoMIV	GCCGGC	2 cut(s)	204, 478
NlaIII	CATG	3 cut(s)	46, 165, 493
NlaIV	GGNNCC	3 cut(s)	6, 29, 440
NruI	TCGCGA	1 cut(s)	141
PdiI	GCCGGC	2 cut(s)	206, 480
PfoI	TCCNGGA	1 cut(s)	23
PkrI	GCNGC	5 cut(s)	167, 197, 227, 276, 373
PleI	GAGTC	2 cut(s)	120, 290
PpsI	GAGTC	2 cut(s)	120, 290
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	3 cut(s)	6, 29, 440
PspPI	GGNCC	4 cut(s)	101, 245, 269, 280
PsuI	RGATCY	2 cut(s)	20, 328
RruI	TCGCGA	1 cut(s)	141
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
SatI	GCNGC	5 cut(s)	166, 196, 226, 275, 372
Sau3AI	GATC	4 cut(s)	12, 20, 259, 328
Sau96I	GGNCC	4 cut(s)	101, 245, 269, 280
SchI	GAGTC	2 cut(s)	120, 290
ScrFI	CCNGG	3 cut(s)	25, 201, 384
SduI	GDGCHC	1 cut(s)	240
SetI	ASST	7 cut(s)	147, 192, 230, 311, 408, 421, 440
SinI	GGWCC	2 cut(s)	245, 280
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
SsiI	CCGC	7 cut(s)	88, 166, 181, 272, 275, 369, 372
SspMI	CTAG	2 cut(s)	284, 426
StyD4I	CCNGG	3 cut(s)	23, 199, 382
StyI	CCWWGG	2 cut(s)	425, 489
TaaI	ACNGT	2 cut(s)	245, 472
TaqI	TCGA	1 cut(s)	171
TauI	GCSGC	3 cut(s)	168, 277, 374
TscAI	CASTG	3 cut(s)	111, 240, 477
TseI	GCWGC	2 cut(s)	195, 225
TspDTI	ATGAA	2 cut(s)	84, 231
TspRI	CASTG	3 cut(s)	111, 240, 477
VpaK11BI	GGWCC	2 cut(s)	245, 280
XmaJI	CCTAGG	1 cut(s)	425
XspI	CTAG	2 cut(s)	284, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.