Rmu_sc0000780.1_g000016

Protein of unknown function (DUF620)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000780.1
OG0002346
Physical Location & Seq
Reverse (-)
96391 .. 96759
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000780.1_g000016.1.cds

Sequence Viewer

Length: 369 bp
ctgggtcaagaggaaagaatcaggctaaagtccataactgactctccacaaatagagaagaagcaagggtacttctctgctcttaaagacgaggtggttcgtggcctcagcccctctcgctcccgcaccaccagcctcgcctgctccagctcccccatgttgggtctgctccgccggaagaagcaacacagccaccacaacggtaccggccacgaccaactggtcgcacaactggagccgttgatcgggaaatccgggagcctcaagccagtcgtggagggttcggatttggacagcgaggaaatcacggattcaaatagggtcgggtctgggctaatggatgcgcactctcccggacttcttcggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF620

Protein Analysis

122

Amino Acids

13.24

Weight (kDa)

8.87

Isoelectric Point (pI)

66.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 221
Acc16I TGCGCA 1 cut(s) 345
Acc65I GGTACC 1 cut(s) 203
AccB1I GGYRCC 1 cut(s) 203
AciI CCGC 2 cut(s) 124, 172
AcoI YGGCCR 1 cut(s) 208
AfaI GTAC 2 cut(s) 71, 205
AfiI CCNNNNNNNGG 3 cut(s) 160, 161, 245
AgsI TTSAA 1 cut(s) 315
AluBI AGCT 1 cut(s) 150
AluI AGCT 1 cut(s) 150
AoxI GGCC 2 cut(s) 103, 208
Asp718I GGTACC 1 cut(s) 203
AspLEI GCGC 1 cut(s) 346
AsuC2I CCSGG 2 cut(s) 256, 354
BaeI ACNNNNGTAYC 2 cut(s) 187, 220
BanI GGYRCC 1 cut(s) 203
BarI GAAGNNNNNNTAC 2 cut(s) 53, 85
BbvCI CCTCAGC 1 cut(s) 107
BceAI ACGGC 1 cut(s) 223
BcnI CCSGG 2 cut(s) 256, 354
Bme1390I CCNGG 2 cut(s) 256, 354
BmiI GGNNCC 3 cut(s) 205, 237, 260
BmrFI CCNGG 2 cut(s) 256, 354
BmsI GCATC 1 cut(s) 331
BpmI CTGGAG 2 cut(s) 130, 254
Bpu10I CCTNAGC 1 cut(s) 107
BpuEI CTTGAG 1 cut(s) 248
BpuMI CCSGG 2 cut(s) 256, 354
BsaXI ACNNNNNCTCC 2 cut(s) 28, 58
Bsc4I CCNNNNNNNGG 3 cut(s) 160, 161, 245
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 3 cut(s) 225, 237, 269
BseGI GGATG 1 cut(s) 346
BseLI CCNNNNNNNGG 3 cut(s) 160, 161, 245
BseMII CTCAG 1 cut(s) 121
BseNI ACTGG 3 cut(s) 225, 237, 269
BshFI GGCC 2 cut(s) 105, 210
BshNI GGYRCC 1 cut(s) 203
BsiSI CCGG 4 cut(s) 175, 207, 255, 354
BslI CCNNNNNNNGG 3 cut(s) 160, 161, 245
BsnI GGCC 2 cut(s) 105, 210
Bsp143I GATC 1 cut(s) 243
BspACI CCGC 2 cut(s) 124, 172
BspANI GGCC 2 cut(s) 105, 210
BspCNI CTCAG 1 cut(s) 120
BspLI GGNNCC 3 cut(s) 205, 237, 260
BspT107I GGYRCC 1 cut(s) 203
BsrFI RCCGGY 1 cut(s) 206
BsrI ACTGG 3 cut(s) 225, 237, 269
BssAI RCCGGY 1 cut(s) 206
BssMI GATC 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 1 cut(s) 107
BstF5I GGATG 1 cut(s) 346
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 1 cut(s) 246
BstMBI GATC 1 cut(s) 243
BstMWI GCNNNNNNNGC 3 cut(s) 117, 132, 141
BstSCI CCNGG 2 cut(s) 254, 352
BsuRI GGCC 2 cut(s) 105, 210
BtsCI GGATG 1 cut(s) 346
Cac8I GCNNGC 1 cut(s) 142
CfoI GCGC 1 cut(s) 346
Cfr10I RCCGGY 1 cut(s) 206
Csp6I GTAC 2 cut(s) 70, 204
CviAII CATG 1 cut(s) 157
CviQI GTAC 2 cut(s) 70, 204
DdeI CTNAG 1 cut(s) 107
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
DrdI GACNNNNNNGTC 1 cut(s) 221
DseDI GACNNNNNNGTC 1 cut(s) 221
EaeI YGGCCR 1 cut(s) 208
EciI GGCGGA 1 cut(s) 161
FaeI CATG 1 cut(s) 160
FaiI YATR 2 cut(s) 35, 158
FatI CATG 1 cut(s) 156
FauI CCCGC 1 cut(s) 131
FokI GGATG 1 cut(s) 353
FspAI RTGCGCAY 1 cut(s) 345
FspI TGCGCA 1 cut(s) 345
GlaI GCGC 1 cut(s) 345
GsuI CTGGAG 2 cut(s) 130, 254
HaeIII GGCC 2 cut(s) 105, 210
HapII CCGG 4 cut(s) 175, 207, 255, 354
HhaI GCGC 1 cut(s) 346
Hin1II CATG 1 cut(s) 160
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HinfI GANTC 3 cut(s) 18, 41, 311
HpaII CCGG 4 cut(s) 175, 207, 255, 354
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 2 cut(s) 8, 247
HpyCH4III ACNGT 1 cut(s) 203
HpyF10VI GCNNNNNNNGC 3 cut(s) 117, 132, 141
HpyF3I CTNAG 1 cut(s) 107
Hsp92II CATG 1 cut(s) 160
HspAI GCGC 1 cut(s) 344
KpnI GGTACC 1 cut(s) 207
Kzo9I GATC 1 cut(s) 243
LmnI GCTCC 6 cut(s) 125, 149, 155, 174, 235, 258
LweI GCATC 1 cut(s) 331
MalI GATC 1 cut(s) 245
MboI GATC 1 cut(s) 243
MboII GAAGA 3 cut(s) 70, 190, 353
MlyI GAGTC 1 cut(s) 35
MnlI CCTC 8 cut(s) 4, 85, 116, 124, 146, 271, 272, 292
MseI TTAA 1 cut(s) 84
MspI CCGG 4 cut(s) 175, 207, 255, 354
MspR9I CCNGG 2 cut(s) 256, 354
MwoI GCNNNNNNNGC 3 cut(s) 117, 132, 141
NciI CCSGG 2 cut(s) 256, 354
NdeII GATC 1 cut(s) 243
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 3 cut(s) 205, 237, 260
NsbI TGCGCA 1 cut(s) 345
PfeI GAWTC 2 cut(s) 18, 311
PfoI TCCNGGA 2 cut(s) 254, 352
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
PspN4I GGNNCC 3 cut(s) 205, 237, 260
RsaI GTAC 2 cut(s) 71, 205
RsaNI GTAC 2 cut(s) 70, 204
SaqAI TTAA 1 cut(s) 84
Sau3AI GATC 1 cut(s) 243
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 2 cut(s) 256, 354
SetI ASST 2 cut(s) 96, 152
SfaNI GCATC 1 cut(s) 331
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
SsiI CCGC 2 cut(s) 124, 172
StyD4I CCNGG 2 cut(s) 254, 352
TaaI ACNGT 1 cut(s) 203
TfiI GAWTC 2 cut(s) 18, 311
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TspGWI ACGGA 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.