E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G12760 AT1G12760 AT1G63170 |
| fragaria_vesca | FvH4_5g01740 FvH4_5g01740 FvH4_5g01740 FvH4_5g01740 |
| malus_domestica | MD00G1110500.v1.1 MD04G1044500.v1.1 MD04G1064900.v1.1 MD10G1187400.v1.1 MD11G1252000.v1.1 MD13G1133300.v1.1 |
| prunus_persica | Prupe.5G092900_v2.0.a1 Prupe.5G092900_v2.0.a1 Prupe.5G092900_v2.0.a1 |
| pyrus_communis | pycom04g05870 pycom06g07380 |
| rosa_chinensis | RchiOBHm_Chr7g0198981 |
| rosa_laevigata | RLG00000003827 |
| rosa_multiflora | Rmu_co8298497.1_g000001 Rmu_sc0006266.1_g000024 Rmu_sc0007328.1_g000010 |
| rosa_roxburghii | Rroxscaffold_3G00257250 |
| rosa_rugosa | Rorug07G0051800 Rorug07G0051900 Rorug07G0051900 |
| rosa_samantha | Rh7AG174900 Rh7BG178100 Rh7CG184100 Rh7DG177500 |
| rosa_wichuraiana | Rw7G015340 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 644 |
| Acc36I | ACCTGC | 1 cut(s) | 644 |
| Acc65I | GGTACC | 1 cut(s) | 566 |
| AccB1I | GGYRCC | 2 cut(s) | 93, 566 |
| AccI | GTMKAC | 1 cut(s) | 36 |
| AccII | CGCG | 6 cut(s) | 109, 134, 174, 203, 371, 673 |
| AclWI | GGATC | 3 cut(s) | 12, 365, 635 |
| AcsI | RAATTY | 3 cut(s) | 490, 866, 872 |
| AcyI | GRCGYC | 2 cut(s) | 44, 94 |
| AfaI | GTAC | 7 cut(s) | 242, 326, 368, 533, 568, 912, 1115 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 22, 127, 448 |
| AflIII | ACRYGT | 2 cut(s) | 369, 534 |
| AgsI | TTSAA | 3 cut(s) | 864, 871, 1126 |
| AjnI | CCWGG | 4 cut(s) | 147, 309, 588, 711 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 481, 513 |
| AluBI | AGCT | 2 cut(s) | 688, 859 |
| AluI | AGCT | 2 cut(s) | 688, 859 |
| Alw26I | GTCTC | 1 cut(s) | 191 |
| AlwI | GGATC | 3 cut(s) | 12, 365, 635 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 121 |
| Ama87I | CYCGRG | 2 cut(s) | 61, 88 |
| AoxI | GGCC | 3 cut(s) | 3, 129, 150 |
| ApeKI | GCWGC | 3 cut(s) | 156, 990, 1134 |
| ApoI | RAATTY | 3 cut(s) | 490, 866, 872 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 946 |
| Asp718I | GGTACC | 1 cut(s) | 566 |
| AspLEI | GCGC | 6 cut(s) | 96, 109, 111, 147, 174, 673 |
| AspS9I | GGNCC | 1 cut(s) | 190 |
| AsuC2I | CCSGG | 1 cut(s) | 194 |
| AsuHPI | GGTGA | 2 cut(s) | 466, 942 |
| AvaI | CYCGRG | 2 cut(s) | 61, 88 |
| AvaII | GGWCC | 1 cut(s) | 190 |
| AxyI | CCTNAGG | 1 cut(s) | 347 |
| BanI | GGYRCC | 2 cut(s) | 93, 566 |
| BbsI | GAAGAC | 2 cut(s) | 779, 852 |
| BbvCI | CCTCAGC | 1 cut(s) | 684 |
| BbvI | GCAGC | 3 cut(s) | 168, 977, 1146 |
| BccI | CCATC | 2 cut(s) | 824, 1010 |
| BceAI | ACGGC | 2 cut(s) | 31, 163 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 124, 158 |
| BciT130I | CCWGG | 4 cut(s) | 149, 311, 590, 713 |
| BclI | TGATCA | 2 cut(s) | 547, 958 |
| BcnI | CCSGG | 1 cut(s) | 194 |
| BcoDI | GTCTC | 1 cut(s) | 191 |
| BfaI | CTAG | 1 cut(s) | 914 |
| BfoI | RGCGCY | 1 cut(s) | 97 |
| BfuAI | ACCTGC | 1 cut(s) | 644 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 349 |
| BlpI | GCTNAGC | 1 cut(s) | 582 |
| Bme1390I | CCNGG | 5 cut(s) | 149, 194, 311, 590, 713 |
| Bme18I | GGWCC | 1 cut(s) | 190 |
| BmeT110I | CYCGRG | 2 cut(s) | 61, 88 |
| BmgT120I | GGNCC | 1 cut(s) | 190 |
| BmiI | GGNNCC | 2 cut(s) | 95, 568 |
| BmrFI | CCNGG | 5 cut(s) | 149, 194, 311, 590, 713 |
| BmsI | GCATC | 4 cut(s) | 174, 845, 970, 1002 |
| BpiI | GAAGAC | 2 cut(s) | 779, 852 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 71, 103 |
| Bpu10I | CCTNAGC | 1 cut(s) | 684 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 582 |
| BpuMI | CCSGG | 1 cut(s) | 194 |
| BsaAI | YACGTR | 1 cut(s) | 535 |
| BsaHI | GRCGYC | 2 cut(s) | 44, 94 |
| BsaI | GGTCTC | 1 cut(s) | 191 |
| BsaJI | CCNNGG | 3 cut(s) | 21, 201, 712 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 22, 127, 448 |
| Bse118I | RCCGGY | 5 cut(s) | 250, 321, 429, 441, 902 |
| Bse1I | ACTGG | 2 cut(s) | 698, 756 |
| Bse21I | CCTNAGG | 1 cut(s) | 347 |
| BseBI | CCWGG | 4 cut(s) | 149, 311, 590, 713 |
| BseDI | CCNNGG | 3 cut(s) | 21, 201, 712 |
| BseGI | GGATG | 2 cut(s) | 835, 985 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 22, 127, 448 |
| BseMII | CTCAG | 5 cut(s) | 338, 542, 549, 698, 986 |
| BseNI | ACTGG | 2 cut(s) | 698, 756 |
| BsePI | GCGCGC | 1 cut(s) | 107 |
| BseRI | GAGGAG | 3 cut(s) | 233, 575, 936 |
| BseXI | GCAGC | 3 cut(s) | 168, 977, 1146 |
| Bsh1236I | CGCG | 6 cut(s) | 109, 134, 174, 203, 371, 673 |
| BshFI | GGCC | 3 cut(s) | 5, 131, 152 |
| BshNI | GGYRCC | 2 cut(s) | 93, 566 |
| BsiHKCI | CYCGRG | 2 cut(s) | 61, 88 |
| BsiSI | CCGG | 7 cut(s) | 193, 251, 322, 335, 430, 442, 903 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 22, 127, 448 |
| BsmAI | GTCTC | 1 cut(s) | 191 |
| BsnI | GGCC | 3 cut(s) | 5, 131, 152 |
| Bso31I | GGTCTC | 1 cut(s) | 191 |
| BsoBI | CYCGRG | 2 cut(s) | 61, 88 |
| Bsp143I | GATC | 7 cut(s) | 17, 357, 547, 627, 823, 958, 1141 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 582 |
| BspANI | GGCC | 3 cut(s) | 5, 131, 152 |
| BspCNI | CTCAG | 5 cut(s) | 339, 541, 550, 697, 985 |
| BspFNI | CGCG | 6 cut(s) | 109, 134, 174, 203, 371, 673 |
| BspLI | GGNNCC | 2 cut(s) | 95, 568 |
| BspMI | ACCTGC | 1 cut(s) | 644 |
| BspPI | GGATC | 3 cut(s) | 12, 365, 635 |
| BspT107I | GGYRCC | 2 cut(s) | 93, 566 |
| BspTNI | GGTCTC | 1 cut(s) | 191 |
| BsrFI | RCCGGY | 5 cut(s) | 250, 321, 429, 441, 902 |
| BsrI | ACTGG | 2 cut(s) | 698, 756 |
| BssAI | RCCGGY | 5 cut(s) | 250, 321, 429, 441, 902 |
| BssECI | CCNNGG | 3 cut(s) | 21, 201, 712 |
| BssHII | GCGCGC | 1 cut(s) | 107 |
| BssMI | GATC | 7 cut(s) | 17, 357, 547, 627, 823, 958, 1141 |
| BssNI | GRCGYC | 2 cut(s) | 44, 94 |
| Bst2UI | CCWGG | 4 cut(s) | 149, 311, 590, 713 |
| Bst4CI | ACNGT | 2 cut(s) | 307, 1061 |
| Bst6I | CTCTTC | 1 cut(s) | 1121 |
| BstACI | GRCGYC | 2 cut(s) | 44, 94 |
| BstBAI | YACGTR | 1 cut(s) | 535 |
| BstC8I | GCNNGC | 9 cut(s) | 98, 109, 122, 129, 154, 176, 431, 675, 904 |
| BstDEI | CTNAG | 9 cut(s) | 317, 347, 528, 558, 582, 684, 840, 972, 1028 |
| BstDSI | CCRYGG | 1 cut(s) | 201 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 125 |
| BstF5I | GGATG | 2 cut(s) | 835, 985 |
| BstFNI | CGCG | 6 cut(s) | 109, 134, 174, 203, 371, 673 |
| BstH2I | RGCGCY | 1 cut(s) | 97 |
| BstHHI | GCGC | 6 cut(s) | 96, 109, 111, 147, 174, 673 |
| BstKTI | GATC | 7 cut(s) | 20, 360, 550, 630, 826, 961, 1144 |
| BstMAI | GTCTC | 1 cut(s) | 191 |
| BstMBI | GATC | 7 cut(s) | 17, 357, 547, 627, 823, 958, 1141 |
| BstNI | CCWGG | 4 cut(s) | 149, 311, 590, 713 |
| BstNSI | RCATGY | 1 cut(s) | 759 |
| BstSCI | CCNGG | 5 cut(s) | 147, 192, 309, 588, 711 |
| BstUI | CGCG | 6 cut(s) | 109, 134, 174, 203, 371, 673 |
| BstV1I | GCAGC | 3 cut(s) | 168, 977, 1146 |
| BstV2I | GAAGAC | 2 cut(s) | 779, 852 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 253 |
| Bsu36I | CCTNAGG | 1 cut(s) | 347 |
| BsuRI | GGCC | 3 cut(s) | 5, 131, 152 |
| BtgI | CCRYGG | 1 cut(s) | 201 |
| BtgZI | GCGATG | 1 cut(s) | 921 |
| BtsCI | GGATG | 2 cut(s) | 835, 985 |
| BtsI | GCAGTG | 3 cut(s) | 383, 431, 580 |
| BtsIMutI | CAGTG | 5 cut(s) | 383, 431, 580, 749, 1057 |
| BveI | ACCTGC | 1 cut(s) | 644 |
| Cac8I | GCNNGC | 9 cut(s) | 98, 109, 122, 129, 154, 176, 431, 675, 904 |
| CaiI | CAGNNNCTG | 1 cut(s) | 121 |
| CfoI | GCGC | 6 cut(s) | 96, 109, 111, 147, 174, 673 |
| Cfr10I | RCCGGY | 5 cut(s) | 250, 321, 429, 441, 902 |
| Cfr13I | GGNCC | 1 cut(s) | 190 |
| Cfr42I | CCGCGG | 1 cut(s) | 204 |
| CseI | GACGC | 2 cut(s) | 52, 394 |
| Csp6I | GTAC | 7 cut(s) | 241, 325, 367, 532, 567, 911, 1114 |
| CviAII | CATG | 3 cut(s) | 169, 756, 962 |
| CviQI | GTAC | 7 cut(s) | 241, 325, 367, 532, 567, 911, 1114 |
| DdeI | CTNAG | 9 cut(s) | 317, 347, 528, 558, 582, 684, 840, 972, 1028 |
| DinI | GGCGCC | 1 cut(s) | 95 |
| DpnI | GATC | 7 cut(s) | 19, 359, 549, 629, 825, 960, 1143 |
| DpnII | GATC | 7 cut(s) | 17, 357, 547, 627, 823, 958, 1141 |
| Eam1104I | CTCTTC | 1 cut(s) | 1121 |
| EarI | CTCTTC | 1 cut(s) | 1121 |
| EciI | GGCGGA | 1 cut(s) | 221 |
| Eco31I | GGTCTC | 1 cut(s) | 191 |
| Eco47I | GGWCC | 1 cut(s) | 190 |
| Eco81I | CCTNAGG | 1 cut(s) | 347 |
| Eco88I | CYCGRG | 2 cut(s) | 61, 88 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 125 |
| EcoRII | CCWGG | 4 cut(s) | 147, 309, 588, 711 |
| EgeI | GGCGCC | 1 cut(s) | 95 |
| EheI | GGCGCC | 1 cut(s) | 95 |
| FaeI | CATG | 3 cut(s) | 172, 759, 965 |
| FatI | CATG | 3 cut(s) | 168, 755, 961 |
| FauI | CCCGC | 1 cut(s) | 59 |
| FauNDI | CATATG | 2 cut(s) | 390, 552 |
| FbaI | TGATCA | 2 cut(s) | 547, 958 |
| FblI | GTMKAC | 1 cut(s) | 36 |
| FokI | GGATG | 2 cut(s) | 842, 992 |
| FspBI | CTAG | 1 cut(s) | 914 |
| GlaI | GCGC | 6 cut(s) | 95, 108, 110, 146, 173, 672 |
| HaeII | RGCGCY | 1 cut(s) | 97 |
| HaeIII | GGCC | 3 cut(s) | 5, 131, 152 |
| HapII | CCGG | 7 cut(s) | 193, 251, 322, 335, 430, 442, 903 |
| HgaI | GACGC | 2 cut(s) | 52, 394 |
| HhaI | GCGC | 6 cut(s) | 96, 109, 111, 147, 174, 673 |
| Hin1I | GRCGYC | 2 cut(s) | 44, 94 |
| Hin1II | CATG | 3 cut(s) | 172, 759, 965 |
| Hin6I | GCGC | 6 cut(s) | 94, 107, 109, 145, 172, 671 |
| HinP1I | GCGC | 6 cut(s) | 94, 107, 109, 145, 172, 671 |
| HincII | GTYRAC | 1 cut(s) | 37 |
| HindII | GTYRAC | 1 cut(s) | 37 |
| HinfI | GANTC | 3 cut(s) | 80, 593, 947 |
| HpaII | CCGG | 7 cut(s) | 193, 251, 322, 335, 430, 442, 903 |
| HphI | GGTGA | 2 cut(s) | 466, 942 |
| Hpy166II | GTNNAC | 1 cut(s) | 37 |
| Hpy188I | TCNGA | 4 cut(s) | 25, 76, 417, 878 |
| Hpy188III | TCNNGA | 5 cut(s) | 263, 274, 827, 974, 1123 |
| Hpy8I | GTNNAC | 1 cut(s) | 37 |
| Hpy99I | CGWCG | 5 cut(s) | 38, 46, 80, 184, 410 |
| HpyAV | CCTTC | 2 cut(s) | 295, 464 |
| HpyCH4III | ACNGT | 2 cut(s) | 307, 1061 |
| HpyCH4IV | ACGT | 1 cut(s) | 534 |
| HpyCH4V | TGCA | 9 cut(s) | 376, 388, 599, 749, 795, 803, 993, 1068, 1110 |
| HpyF3I | CTNAG | 9 cut(s) | 317, 347, 528, 558, 582, 684, 840, 972, 1028 |
| HpySE526I | ACGT | 1 cut(s) | 534 |
| Hsp92I | GRCGYC | 2 cut(s) | 44, 94 |
| Hsp92II | CATG | 3 cut(s) | 172, 759, 965 |
| HspAI | GCGC | 6 cut(s) | 94, 107, 109, 145, 172, 671 |
| KasI | GGCGCC | 1 cut(s) | 93 |
| KpnI | GGTACC | 1 cut(s) | 570 |
| KroI | GCCGGC | 2 cut(s) | 429, 902 |
| KroNI | GCCGGC | 2 cut(s) | 431, 904 |
| Ksp22I | TGATCA | 2 cut(s) | 547, 958 |
| KspI | CCGCGG | 1 cut(s) | 204 |
| Kzo9I | GATC | 7 cut(s) | 17, 357, 547, 627, 823, 958, 1141 |
| LmnI | GCTCC | 2 cut(s) | 208, 833 |
| Lsp1109I | GCAGC | 3 cut(s) | 168, 977, 1146 |
| LweI | GCATC | 4 cut(s) | 174, 845, 970, 1002 |
| MaeI | CTAG | 1 cut(s) | 914 |
| MaeII | ACGT | 1 cut(s) | 534 |
| MalI | GATC | 7 cut(s) | 19, 359, 549, 629, 825, 960, 1143 |
| MboI | GATC | 7 cut(s) | 17, 357, 547, 627, 823, 958, 1141 |
| MboII | GAAGA | 4 cut(s) | 779, 857, 996, 1138 |
| MfeI | CAATTG | 1 cut(s) | 212 |
| MluCI | AATT | 6 cut(s) | 101, 212, 490, 705, 866, 872 |
| MluI | ACGCGT | 1 cut(s) | 369 |
| Mly113I | GGCGCC | 1 cut(s) | 94 |
| MlyI | GAGTC | 1 cut(s) | 89 |
| MmeI | TCCRAC | 1 cut(s) | 99 |
| MroNI | GCCGGC | 2 cut(s) | 429, 902 |
| MroXI | GAANNNNTTC | 1 cut(s) | 946 |
| MslI | CAYNNNNRTG | 1 cut(s) | 754 |
| MspA1I | CMGCKG | 1 cut(s) | 203 |
| MspI | CCGG | 7 cut(s) | 193, 251, 322, 335, 430, 442, 903 |
| MspR9I | CCNGG | 5 cut(s) | 149, 194, 311, 590, 713 |
| MunI | CAATTG | 1 cut(s) | 212 |
| MvaI | CCWGG | 4 cut(s) | 149, 311, 590, 713 |
| MvnI | CGCG | 6 cut(s) | 109, 134, 174, 203, 371, 673 |
| NaeI | GCCGGC | 2 cut(s) | 431, 904 |
| NarI | GGCGCC | 1 cut(s) | 94 |
| NciI | CCSGG | 1 cut(s) | 194 |
| NdeI | CATATG | 2 cut(s) | 390, 552 |
| NdeII | GATC | 7 cut(s) | 17, 357, 547, 627, 823, 958, 1141 |
| NgoMIV | GCCGGC | 2 cut(s) | 429, 902 |
| NlaIII | CATG | 3 cut(s) | 172, 759, 965 |
| NlaIV | GGNNCC | 2 cut(s) | 95, 568 |
| NspI | RCATGY | 1 cut(s) | 759 |
| PaqCI | CACCTGC | 1 cut(s) | 644 |
| PauI | GCGCGC | 1 cut(s) | 107 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 68 |
| PdiI | GCCGGC | 2 cut(s) | 431, 904 |
| PdmI | GAANNNNTTC | 1 cut(s) | 946 |
| PfeI | GAWTC | 2 cut(s) | 593, 947 |
| PflFI | GACNNNGTC | 1 cut(s) | 32 |
| PfoI | TCCNGGA | 1 cut(s) | 192 |
| PleI | GAGTC | 1 cut(s) | 88 |
| PluTI | GGCGCC | 1 cut(s) | 97 |
| PpsI | GAGTC | 1 cut(s) | 88 |
| Ppu21I | YACGTR | 1 cut(s) | 535 |
| Psp6I | CCWGG | 4 cut(s) | 147, 309, 588, 711 |
| PspGI | CCWGG | 4 cut(s) | 147, 309, 588, 711 |
| PspN4I | GGNNCC | 2 cut(s) | 95, 568 |
| PspPI | GGNCC | 1 cut(s) | 190 |
| PstNI | CAGNNNCTG | 1 cut(s) | 121 |
| PsyI | GACNNNGTC | 1 cut(s) | 32 |
| PteI | GCGCGC | 1 cut(s) | 107 |
| RsaI | GTAC | 7 cut(s) | 242, 326, 368, 533, 568, 912, 1115 |
| RsaNI | GTAC | 7 cut(s) | 241, 325, 367, 532, 567, 911, 1114 |
| RseI | CAYNNNNRTG | 1 cut(s) | 754 |
| SacII | CCGCGG | 1 cut(s) | 204 |
| SalI | GTCGAC | 1 cut(s) | 35 |
| Sau3AI | GATC | 7 cut(s) | 17, 357, 547, 627, 823, 958, 1141 |
| Sau96I | GGNCC | 1 cut(s) | 190 |
| SchI | GAGTC | 1 cut(s) | 89 |
| ScrFI | CCNGG | 5 cut(s) | 149, 194, 311, 590, 713 |
| SetI | ASST | 8 cut(s) | 140, 537, 591, 658, 690, 861, 919, 1100 |
| SfaNI | GCATC | 4 cut(s) | 174, 845, 970, 1002 |
| SfoI | GGCGCC | 1 cut(s) | 95 |
| Sfr303I | CCGCGG | 1 cut(s) | 204 |
| SgrBI | CCGCGG | 1 cut(s) | 204 |
| SinI | GGWCC | 1 cut(s) | 190 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 754 |
| Sse9I | AATT | 6 cut(s) | 101, 212, 490, 705, 866, 872 |
| SspDI | GGCGCC | 1 cut(s) | 93 |
| SspMI | CTAG | 1 cut(s) | 914 |
| StyD4I | CCNGG | 5 cut(s) | 147, 192, 309, 588, 711 |
| TaaI | ACNGT | 2 cut(s) | 307, 1061 |
| TaiI | ACGT | 1 cut(s) | 537 |
| TaqI | TCGA | 6 cut(s) | 36, 83, 182, 264, 408, 852 |
| TasI | AATT | 6 cut(s) | 101, 212, 490, 705, 866, 872 |
| TatI | WGTACW | 2 cut(s) | 910, 1113 |
| TauI | GCSGC | 7 cut(s) | 127, 134, 162, 165, 206, 302, 424 |
| TfiI | GAWTC | 2 cut(s) | 593, 947 |
| TscAI | CASTG | 5 cut(s) | 383, 431, 580, 756, 1064 |
| TseI | GCWGC | 3 cut(s) | 156, 990, 1134 |
| TspGWI | ACGGA | 1 cut(s) | 780 |
| TspRI | CASTG | 5 cut(s) | 383, 431, 580, 756, 1064 |
| Tth111I | GACNNNGTC | 1 cut(s) | 32 |
| VpaK11BI | GGWCC | 1 cut(s) | 190 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 125 |
| XapI | RAATTY | 3 cut(s) | 490, 866, 872 |
| XceI | RCATGY | 1 cut(s) | 759 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 253 |
| XmiI | GTMKAC | 1 cut(s) | 36 |
| XmnI | GAANNNNTTC | 1 cut(s) | 946 |
| XspI | CTAG | 1 cut(s) | 914 |