Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003307

Physical Location & Seq

Genomic Coordinates Forward (+)

15871144 .. 15872418

Gene Structure 1275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g10570.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGGACCTGTGAAGAAGGCTATGGACGACGCTGGCTTGGAGAAGCGCCAGATTGATGAGATTGTGCTTGTTGGTGGAAGTACCAGGATTCCCAAGGTCCAACAGCTTCTTAAGGACTACTTTGATGGCAAGGAGCCAAACAAGGGTGTGAACCCTGATGAGGCTGTTGCTTATGGTGCTGCTGTACAAGGAAGCATCTTAAGTGGAGAGGGTGGTGAAGAAACCAAAGATATTCTTCTCCTTGACGTCGCACCTCTCACCCTCGGTATTGAAACTGTTGGAGGAGTGATGACCAAGCTTATCCCAAGAAACACCGTGATCCCAACCAAGAAATCCCAGGTTTTCACCACCTACCAGGATCAGCAGACAACCGTCTCCATTCAGGTCTTTGAGGGTGAAAGGAGTCTCACAAAGGATTGCAGGAACCTCGGTAAATTTGATCTTTCCGGAATTCCTCCAGCTCCAAGGGGAACTCCTCAAATCGAAGTCACATTCGAAGTGGATGCCAACGGTATCCTGAACGTCAGGGCAGAAGACAAGGGAACTGGTAAATCCGAGAAGATCACCATCACAAACGACAAGGGTCGTCTCAGCCAGGAGGAGATTGAGCGCATGGTTAAGGAGGCAGAAGAGTTTGCCGAGGAAGACAAGAAGGTGAAGGAGAGAATCGATGCCCGCAACAGCCTCGAGACCTATGTCTACAACATGAAGAACCAGGTCAATGACAAAGACAAGCTTGCTGACAAGCTTGAGTCCGATGAGAAGGAAAAGATTGAGACCGCGACAAAGGAAGCCCTCGAGTGGTTGGACGACAACCAGACCGCCGAGAAGGAAGACTATGACGAGAAGCTCAAGGAGGTCGAAGCCGTGTGCAACCCCATCATCTCAGCCGTCTACCAGAGGTCAGGAGGTGCCCCGGGTGGTGCCGGAGCCTCGGAGGAGGACGATGAGTCACATGACGAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0012505 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

323

Amino Acids

35.42

Weight (kDa)

4.6

Isoelectric Point (pI)

30.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28540 AT5G42020 AT5G42020 AT5G42020
fragaria_vesca	FvH4_3g14480 FvH4_5g11500 FvH4_5g11500
malus_domestica	MD06G1113000.v1.1 MD14G1134100.v1.1
prunus_persica	Prupe.5G125900_v2.0.a1 Prupe.5G125900_v2.0.a1 Prupe.5G125900_v2.0.a1
pyrus_communis	pycom06g10560 pycom06g10570
rosa_chinensis	RchiOBHm_Chr5g0023851 RchiOBHm_Chr7g0186301
rosa_laevigata	RLG00000004851 RLG00000032740
rosa_multiflora	Rmu_co8308791.1_g000001 Rmu_sc0001372.1_g000006 Rmu_sc0018092.1_g000001 Rmu_ssc0000027.1_g000008
rosa_roxburghii	Rroxscaffold_1G00055390 Rroxscaffold_3G00268240
rosa_rugosa	Rorug05G0079800 Rorug06G0473100
rosa_samantha	Rh5AG169800 Rh5BG167100 Rh5CG182700 Rh5DG169200 Rh7AG067900 Rh7BG083700 Rh7CG080100 Rh7DG080700
rosa_wichuraiana	Rw5G015350 Rw7G006710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	249
AccB1I	GGYRCC	2 cut(s)	911, 923
AccI	GTMKAC	2 cut(s)	699, 894
AccII	CGCG	1 cut(s)	782
AccIII	TCCGGA	1 cut(s)	446
AciI	CCGC	3 cut(s)	676, 780, 822
AclWI	GGATC	2 cut(s)	313, 366
AcsI	RAATTY	2 cut(s)	434, 450
AcyI	GRCGYC	1 cut(s)	246
AfaI	GTAC	2 cut(s)	82, 186
AfiI	CCNNNNNNNGG	3 cut(s)	143, 160, 801
AflII	CTTAAG	2 cut(s)	110, 199
AgsI	TTSAA	1 cut(s)	272
AhdI	GACNNNNNGTC	1 cut(s)	949
AjnI	CCWGG	5 cut(s)	83, 336, 354, 594, 714
AluBI	AGCT	7 cut(s)	106, 298, 461, 736, 748, 850, 964
AluI	AGCT	7 cut(s)	106, 298, 461, 736, 748, 850, 964
Alw26I	GTCTC	5 cut(s)	379, 410, 593, 683, 770
AlwI	GGATC	2 cut(s)	313, 366
Ama87I	CYCGRG	3 cut(s)	686, 797, 916
Aor13HI	TCCGGA	1 cut(s)	446
ApeKI	GCWGC	1 cut(s)	179
ApoI	RAATTY	2 cut(s)	434, 450
AspLEI	GCGC	2 cut(s)	48, 612
AspS9I	GGNCC	2 cut(s)	5, 97
AsuC2I	CCSGG	2 cut(s)	917, 918
AsuHPI	GGTGA	6 cut(s)	227, 250, 337, 407, 556, 667
AsuII	TTCGAA	1 cut(s)	495
AvaI	CYCGRG	3 cut(s)	686, 797, 916
AvaII	GGWCC	2 cut(s)	5, 97
BaeGI	GKGCMC	1 cut(s)	916
BanI	GGYRCC	2 cut(s)	911, 923
BbsI	GAAGAC	3 cut(s)	540, 651, 840
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	3 cut(s)	119, 575, 887
BceAI	ACGGC	2 cut(s)	851, 875
BcgI	CGANNNNNNTGC	6 cut(s)	409, 443, 485, 519, 667, 701
BciT130I	CCWGG	5 cut(s)	85, 338, 356, 596, 716
BciVI	GTATCC	1 cut(s)	524
BcnI	CCSGG	2 cut(s)	917, 918
BcoDI	GTCTC	5 cut(s)	379, 410, 593, 683, 770
BfoI	RGCGCY	1 cut(s)	49
BfrI	CTTAAG	2 cut(s)	110, 199
BfuI	GTATCC	1 cut(s)	524
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
Bme1390I	CCNGG	7 cut(s)	85, 338, 356, 596, 716, 917, 918
Bme18I	GGWCC	2 cut(s)	5, 97
BmeRI	GACNNNNNGTC	1 cut(s)	949
BmeT110I	CYCGRG	3 cut(s)	686, 797, 916
BmgT120I	GGNCC	2 cut(s)	5, 97
BmiI	GGNNCC	6 cut(s)	6, 135, 425, 913, 925, 931
BmrFI	CCNGG	7 cut(s)	85, 338, 356, 596, 716, 917, 918
BmsI	GCATC	3 cut(s)	204, 493, 661
BoxI	GACNNNNGTC	3 cut(s)	371, 582, 695
BpiI	GAAGAC	3 cut(s)	540, 651, 840
BpmI	CTGGAG	1 cut(s)	441
Bpu14I	TTCGAA	1 cut(s)	495
BpuEI	CTTGAG	2 cut(s)	770, 836
BpuMI	CCSGG	2 cut(s)	917, 918
Bsa29I	ATCGAT	1 cut(s)	669
BsaBI	GATNNNNATC	1 cut(s)	566
BsaHI	GRCGYC	1 cut(s)	246
BsaI	GGTCTC	2 cut(s)	683, 770
BsaJI	CCNNGG	9 cut(s)	93, 262, 336, 427, 464, 639, 915, 916, 933
BsaWI	WCCGGW	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 160, 801
Bse1I	ACTGG	1 cut(s)	550
Bse8I	GATNNNNATC	1 cut(s)	566
BseAI	TCCGGA	1 cut(s)	446
BseBI	CCWGG	5 cut(s)	85, 338, 356, 596, 716
BseCI	ATCGAT	1 cut(s)	669
BseDI	CCNNGG	9 cut(s)	93, 262, 336, 427, 464, 639, 915, 916, 933
BseGI	GGATG	1 cut(s)	508
BseJI	GATNNNNATC	1 cut(s)	566
BseLI	CCNNNNNNNGG	3 cut(s)	143, 160, 801
BseMII	CTCAG	2 cut(s)	604, 900
BseNI	ACTGG	1 cut(s)	550
BseRI	GAGGAG	4 cut(s)	297, 465, 614, 953
BseSI	GKGCMC	1 cut(s)	916
BseXI	GCAGC	1 cut(s)	166
Bsh1236I	CGCG	1 cut(s)	782
BshNI	GGYRCC	2 cut(s)	911, 923
BshVI	ATCGAT	1 cut(s)	669
BsiHKCI	CYCGRG	3 cut(s)	686, 797, 916
BsiSI	CCGG	3 cut(s)	447, 917, 927
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	3 cut(s)	143, 160, 801
BsmAI	GTCTC	5 cut(s)	379, 410, 593, 683, 770
BsmBI	CGTCTC	2 cut(s)	379, 593
BsmFI	GGGAC	1 cut(s)	18
Bso31I	GGTCTC	2 cut(s)	683, 770
BsoBI	CYCGRG	3 cut(s)	686, 797, 916
Bsp119I	TTCGAA	1 cut(s)	495
Bsp1286I	GDGCHC	1 cut(s)	916
Bsp13I	TCCGGA	1 cut(s)	446
Bsp1407I	TGTACA	1 cut(s)	184
Bsp143I	GATC	4 cut(s)	318, 358, 439, 561
BspACI	CCGC	3 cut(s)	676, 780, 822
BspCNI	CTCAG	2 cut(s)	603, 899
BspDI	ATCGAT	1 cut(s)	669
BspEI	TCCGGA	1 cut(s)	446
BspFNI	CGCG	1 cut(s)	782
BspLI	GGNNCC	6 cut(s)	6, 135, 425, 913, 925, 931
BspPI	GGATC	2 cut(s)	313, 366
BspT104I	TTCGAA	1 cut(s)	495
BspT107I	GGYRCC	2 cut(s)	911, 923
BspTI	CTTAAG	2 cut(s)	110, 199
BspTNI	GGTCTC	2 cut(s)	683, 770
BsrGI	TGTACA	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	550
BssECI	CCNNGG	9 cut(s)	93, 262, 336, 427, 464, 639, 915, 916, 933
BssMI	GATC	4 cut(s)	318, 358, 439, 561
BssNI	GRCGYC	1 cut(s)	246
BssT1I	CCWWGG	2 cut(s)	93, 464
Bst2UI	CCWGG	5 cut(s)	85, 338, 356, 596, 716
Bst4CI	ACNGT	4 cut(s)	277, 316, 373, 512
Bst6I	CTCTTC	1 cut(s)	624
BstACI	GRCGYC	1 cut(s)	246
BstAFI	CTTAAG	2 cut(s)	110, 199
BstAUI	TGTACA	1 cut(s)	184
BstBI	TTCGAA	1 cut(s)	495
BstC8I	GCNNGC	3 cut(s)	34, 676, 738
BstDEI	CTNAG	2 cut(s)	590, 886
BstF5I	GGATG	1 cut(s)	508
BstFNI	CGCG	1 cut(s)	782
BstH2I	RGCGCY	1 cut(s)	49
BstHHI	GCGC	2 cut(s)	48, 612
BstKTI	GATC	4 cut(s)	321, 361, 442, 564
BstMAI	GTCTC	5 cut(s)	379, 410, 593, 683, 770
BstMBI	GATC	4 cut(s)	318, 358, 439, 561
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNI	CCWGG	5 cut(s)	85, 338, 356, 596, 716
BstPAI	GACNNNNGTC	3 cut(s)	371, 582, 695
BstSCI	CCNGG	7 cut(s)	83, 336, 354, 594, 714, 915, 916
BstSLI	GKGCMC	1 cut(s)	916
BstUI	CGCG	1 cut(s)	782
BstV1I	GCAGC	1 cut(s)	166
BstV2I	GAAGAC	3 cut(s)	540, 651, 840
Bsu15I	ATCGAT	1 cut(s)	669
BsuI	GTATCC	1 cut(s)	524
BsuTUI	ATCGAT	1 cut(s)	669
BtsCI	GGATG	1 cut(s)	508
Cac8I	GCNNGC	3 cut(s)	34, 676, 738
CfoI	GCGC	2 cut(s)	48, 612
Cfr13I	GGNCC	2 cut(s)	5, 97
Cfr9I	CCCGGG	1 cut(s)	916
ClaI	ATCGAT	1 cut(s)	669
CseI	GACGC	1 cut(s)	38
CsiI	ACCWGGT	1 cut(s)	714
Csp6I	GTAC	2 cut(s)	81, 185
CviAII	CATG	3 cut(s)	613, 706, 956
CviQI	GTAC	2 cut(s)	81, 185
DdeI	CTNAG	2 cut(s)	590, 886
DpnI	GATC	4 cut(s)	320, 360, 441, 563
DpnII	GATC	4 cut(s)	318, 358, 439, 561
DriI	GACNNNNNGTC	1 cut(s)	949
Eam1104I	CTCTTC	1 cut(s)	624
Eam1105I	GACNNNNNGTC	1 cut(s)	949
EarI	CTCTTC	1 cut(s)	624
Eco130I	CCWWGG	2 cut(s)	93, 464
Eco31I	GGTCTC	2 cut(s)	683, 770
Eco47I	GGWCC	2 cut(s)	5, 97
Eco88I	CYCGRG	3 cut(s)	686, 797, 916
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRI	GAATTC	1 cut(s)	450
EcoRII	CCWGG	5 cut(s)	83, 336, 354, 594, 714
EcoT14I	CCWWGG	2 cut(s)	93, 464
ErhI	CCWWGG	2 cut(s)	93, 464
Esp3I	CGTCTC	2 cut(s)	379, 593
FaeI	CATG	3 cut(s)	616, 709, 959
FaiI	YATR	7 cut(s)	23, 174, 614, 696, 707, 840, 957
FalI	AAGNNNNNCTT	6 cut(s)	104, 136, 219, 251, 720, 752
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	3 cut(s)	612, 705, 955
FauI	CCCGC	1 cut(s)	683
FblI	GTMKAC	2 cut(s)	699, 894
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	1 cut(s)	515
Fsp4HI	GCNGC	1 cut(s)	180
GlaI	GCGC	2 cut(s)	47, 611
GluI	GCNGC	1 cut(s)	180
GsuI	CTGGAG	1 cut(s)	441
HaeII	RGCGCY	1 cut(s)	49
HapII	CCGG	3 cut(s)	447, 917, 927
HgaI	GACGC	1 cut(s)	38
HhaI	GCGC	2 cut(s)	48, 612
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	3 cut(s)	616, 709, 959
Hin6I	GCGC	2 cut(s)	46, 610
HinP1I	GCGC	2 cut(s)	46, 610
HindIII	AAGCTT	3 cut(s)	296, 734, 746
HinfI	GANTC	5 cut(s)	88, 403, 666, 752, 950
HpaII	CCGG	3 cut(s)	447, 917, 927
HphI	GGTGA	6 cut(s)	227, 250, 337, 407, 556, 667
Hpy166II	GTNNAC	3 cut(s)	151, 700, 895
Hpy188I	TCNGA	3 cut(s)	556, 757, 937
Hpy188III	TCNNGA	4 cut(s)	447, 517, 688, 906
Hpy8I	GTNNAC	3 cut(s)	151, 700, 895
Hpy99I	CGWCG	2 cut(s)	32, 251
HpyAV	CCTTC	5 cut(s)	10, 646, 652, 757, 823
HpyCH4III	ACNGT	4 cut(s)	277, 316, 373, 512
HpyCH4IV	ACGT	2 cut(s)	246, 522
HpyCH4V	TGCA	2 cut(s)	420, 873
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	2 cut(s)	590, 886
HpySE526I	ACGT	2 cut(s)	246, 522
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	3 cut(s)	616, 709, 959
HspAI	GCGC	2 cut(s)	46, 610
Kpn2I	TCCGGA	1 cut(s)	446
Kzo9I	GATC	4 cut(s)	318, 358, 439, 561
LmnI	GCTCC	3 cut(s)	133, 466, 929
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	3 cut(s)	204, 493, 661
MabI	ACCWGGT	1 cut(s)	714
MaeII	ACGT	2 cut(s)	246, 522
MaeIII	GTNAC	2 cut(s)	487, 951
MalI	GATC	4 cut(s)	320, 360, 441, 563
MboI	GATC	4 cut(s)	318, 358, 439, 561
MboII	GAAGA	9 cut(s)	25, 227, 230, 545, 571, 641, 656, 721, 845
MhlI	GDGCHC	1 cut(s)	916
MluCI	AATT	2 cut(s)	434, 450
MlyI	GAGTC	3 cut(s)	412, 761, 959
MmeI	TCCRAC	3 cut(s)	124, 259, 786
MroI	TCCGGA	1 cut(s)	446
MseI	TTAA	4 cut(s)	111, 200, 618, 967
MspCI	CTTAAG	2 cut(s)	110, 199
MspI	CCGG	3 cut(s)	447, 917, 927
MspR9I	CCNGG	7 cut(s)	85, 338, 356, 596, 716, 917, 918
MvaI	CCWGG	5 cut(s)	85, 338, 356, 596, 716
MvnI	CGCG	1 cut(s)	782
MwoI	GCNNNNNNNGC	1 cut(s)	176
NciI	CCSGG	2 cut(s)	917, 918
NdeII	GATC	4 cut(s)	318, 358, 439, 561
NlaIII	CATG	3 cut(s)	616, 709, 959
NlaIV	GGNNCC	6 cut(s)	6, 135, 425, 913, 925, 931
NmeAIII	GCCGAG	2 cut(s)	664, 850
NmuCI	GTSAC	2 cut(s)	487, 951
NspV	TTCGAA	1 cut(s)	495
PaeR7I	CTCGAG	2 cut(s)	686, 797
PfeI	GAWTC	2 cut(s)	88, 666
PkrI	GCNGC	1 cut(s)	181
PleI	GAGTC	3 cut(s)	411, 760, 958
PpsI	GAGTC	3 cut(s)	411, 760, 958
PpuMI	RGGWCCY	1 cut(s)	5
PshAI	GACNNNNGTC	3 cut(s)	371, 582, 695
Psp5II	RGGWCCY	1 cut(s)	5
Psp6I	CCWGG	5 cut(s)	83, 336, 354, 594, 714
PspGI	CCWGG	5 cut(s)	83, 336, 354, 594, 714
PspN4I	GGNNCC	6 cut(s)	6, 135, 425, 913, 925, 931
PspPI	GGNCC	2 cut(s)	5, 97
PspPPI	RGGWCCY	1 cut(s)	5
PspXI	VCTCGAGB	1 cut(s)	797
RsaI	GTAC	2 cut(s)	82, 186
RsaNI	GTAC	2 cut(s)	81, 185
SaqAI	TTAA	4 cut(s)	111, 200, 618, 967
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	4 cut(s)	318, 358, 439, 561
Sau96I	GGNCC	2 cut(s)	5, 97
SchI	GAGTC	3 cut(s)	412, 761, 959
ScrFI	CCNGG	7 cut(s)	85, 338, 356, 596, 716, 917, 918
SduI	GDGCHC	1 cut(s)	916
SexAI	ACCWGGT	1 cut(s)	714
SfaNI	GCATC	3 cut(s)	204, 493, 661
Sfr274I	CTCGAG	2 cut(s)	686, 797
SfuI	TTCGAA	1 cut(s)	495
SinI	GGWCC	2 cut(s)	5, 97
SlaI	CTCGAG	2 cut(s)	686, 797
SmaI	CCCGGG	1 cut(s)	918
SmlI	CTYRAG	6 cut(s)	110, 199, 686, 749, 797, 851
SmoI	CTYRAG	6 cut(s)	110, 199, 686, 749, 797, 851
Sse9I	AATT	2 cut(s)	434, 450
SsiI	CCGC	3 cut(s)	676, 780, 822
StyD4I	CCNGG	7 cut(s)	83, 336, 354, 594, 714, 915, 916
StyI	CCWWGG	2 cut(s)	93, 464
TaaI	ACNGT	4 cut(s)	277, 316, 373, 512
TaiI	ACGT	2 cut(s)	249, 525
TaqI	TCGA	6 cut(s)	483, 495, 669, 687, 798, 861
TasI	AATT	2 cut(s)	434, 450
TatI	WGTACW	1 cut(s)	184
TfiI	GAWTC	2 cut(s)	88, 666
Tru1I	TTAA	4 cut(s)	111, 200, 618, 967
Tru9I	TTAA	4 cut(s)	111, 200, 618, 967
TseFI	GTSAC	2 cut(s)	487, 951
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	2 cut(s)	487, 951
TspDTI	ATGAA	1 cut(s)	722
TspMI	CCCGGG	1 cut(s)	916
Vha464I	CTTAAG	2 cut(s)	110, 199
VpaK11BI	GGWCC	2 cut(s)	5, 97
XapI	RAATTY	2 cut(s)	434, 450
XhoI	CTCGAG	2 cut(s)	686, 797
XmaI	CCCGGG	1 cut(s)	916
XmiI	GTMKAC	2 cut(s)	699, 894
ZraI	GACGTC	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.