Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8308791.1

Orthogroup ID

OG0003307

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 914

Gene Structure 913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8308791.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

gcaaaggaggagactgccaagttgggaacagtcattgggattgatcttggaacaacttattcctgtgttggtgtgtataagaacggtcatgtggaaattatagccaatgaccaaggaaaccgtatcaccccatcgtgggtggctttcactgacagtgaaaggctgatcggtgaggctgcaaagaatcaggcagctgtgaaccatgaaaggaccgtctttgatgtcaagagacttatcggaagaaagttcgctgacaaagaggtccagagggacatgaagctcgttcctttcaagattgttaaccaggatggaaagccttatattcaagtaaagatcaaggatggtgaaaccaaggttttcagtcctgaggagatcagtgctatgattttgaccaagatgaaggaaacagcagaagcattccttggaaagaaaatcaaggatgctgttgttactgttcctgcatacttcaatgatgctcagagacaggcaaccaaggatgccggtgtcattgctgggcttaatgttgccaggattatcaatgaaccaaccgcagcagctatcgcatatggtttggacaagaagggtggtgaaaagaacattctcgtctttgaccttggtggtggtacttttgatgtcagtattctgacaattgataatggtgtctttgaggttcttgccacaaacggtgacactcatttgggaggtaagaaatcctttacttgttttactcttttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0012505 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

245

Amino Acids

26.59

Weight (kDa)

7.9

Isoelectric Point (pI)

21.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28540 AT5G42020 AT5G42020 AT5G42020
fragaria_vesca	FvH4_3g14480 FvH4_5g11500 FvH4_5g11500
malus_domestica	MD06G1113000.v1.1 MD14G1134100.v1.1
prunus_persica	Prupe.5G125900_v2.0.a1 Prupe.5G125900_v2.0.a1 Prupe.5G125900_v2.0.a1
pyrus_communis	pycom06g10560 pycom06g10570
rosa_chinensis	RchiOBHm_Chr5g0023851 RchiOBHm_Chr7g0186301
rosa_laevigata	RLG00000004851 RLG00000032740
rosa_multiflora	Rmu_co8308791.1_g000001 Rmu_sc0001372.1_g000006 Rmu_sc0018092.1_g000001 Rmu_ssc0000027.1_g000008
rosa_roxburghii	Rroxscaffold_1G00055390 Rroxscaffold_3G00268240
rosa_rugosa	Rorug05G0079800 Rorug06G0473100
rosa_samantha	Rh5AG169800 Rh5BG167100 Rh5CG182700 Rh5DG169200 Rh7AG067900 Rh7BG083700 Rh7CG080100 Rh7DG080700
rosa_wichuraiana	Rw5G015350 Rw7G006710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
AciI	CCGC	1 cut(s)	549
AfaI	GTAC	1 cut(s)	625
AfiI	CCNNNNNNNGG	2 cut(s)	135, 136
AgsI	TTSAA	3 cut(s)	292, 326, 469
AjnI	CCWGG	2 cut(s)	303, 527
AjuI	GAANNNNNNNTTGG	2 cut(s)	405, 437
AluBI	AGCT	3 cut(s)	194, 280, 557
AluI	AGCT	3 cut(s)	194, 280, 557
Alw26I	GTCTC	3 cut(s)	5, 223, 475
ApeKI	GCWGC	4 cut(s)	176, 191, 551, 554
AspS9I	GGNCC	2 cut(s)	210, 262
AsuHPI	GGTGA	5 cut(s)	118, 182, 356, 599, 698
AvaII	GGWCC	2 cut(s)	210, 262
AxyI	CCTNAGG	1 cut(s)	366
BbvI	GCAGC	4 cut(s)	163, 203, 563, 566
BccI	CCATC	3 cut(s)	139, 302, 335
BciT130I	CCWGG	2 cut(s)	305, 529
BcoDI	GTCTC	3 cut(s)	5, 223, 475
BisI	GCNGC	4 cut(s)	177, 192, 552, 555
BlsI	GCNGC	4 cut(s)	178, 193, 553, 556
Bme1390I	CCNGG	2 cut(s)	305, 529
Bme18I	GGWCC	2 cut(s)	210, 262
BmgT120I	GGNCC	2 cut(s)	210, 262
BmrFI	CCNGG	2 cut(s)	305, 529
BmsI	GCATC	3 cut(s)	430, 463, 487
BsaJI	CCNNGG	5 cut(s)	112, 351, 421, 492, 613
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 136
Bse118I	RCCGGY	1 cut(s)	500
Bse21I	CCTNAGG	1 cut(s)	366
Bse3DI	GCAATG	1 cut(s)	507
BseBI	CCWGG	2 cut(s)	305, 529
BseDI	CCNNGG	5 cut(s)	112, 351, 421, 492, 613
BseGI	GGATG	4 cut(s)	313, 346, 445, 502
BseLI	CCNNNNNNNGG	2 cut(s)	135, 136
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	2 cut(s)	357, 491
BseRI	GAGGAG	2 cut(s)	23, 383
BseXI	GCAGC	4 cut(s)	163, 203, 563, 566
BseYI	CCCAGC	1 cut(s)	512
BsiSI	CCGG	1 cut(s)	501
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	2 cut(s)	135, 136
BsmAI	GTCTC	3 cut(s)	5, 223, 475
BsmFI	GGGAC	1 cut(s)	284
BsmI	GAATGC	1 cut(s)	416
Bsp143I	GATC	4 cut(s)	43, 165, 333, 372
BspACI	CCGC	1 cut(s)	549
BspCNI	CTCAG	2 cut(s)	358, 490
BsrDI	GCAATG	1 cut(s)	507
BsrFI	RCCGGY	1 cut(s)	500
BssAI	RCCGGY	1 cut(s)	500
BssECI	CCNNGG	5 cut(s)	112, 351, 421, 492, 613
BssMI	GATC	4 cut(s)	43, 165, 333, 372
BssT1I	CCWWGG	5 cut(s)	112, 351, 421, 492, 613
Bst2UI	CCWGG	2 cut(s)	305, 529
Bst4CI	ACNGT	7 cut(s)	31, 86, 122, 155, 214, 454, 686
BstDEI	CTNAG	2 cut(s)	366, 477
BstF5I	GGATG	4 cut(s)	313, 346, 445, 502
BstKTI	GATC	4 cut(s)	46, 168, 336, 375
BstMAI	GTCTC	3 cut(s)	5, 223, 475
BstMBI	GATC	4 cut(s)	43, 165, 333, 372
BstMWI	GCNNNNNNNGC	1 cut(s)	560
BstNI	CCWGG	2 cut(s)	305, 529
BstSCI	CCNGG	2 cut(s)	303, 527
BstV1I	GCAGC	4 cut(s)	163, 203, 563, 566
Bsu36I	CCTNAGG	1 cut(s)	366
BtsCI	GGATG	4 cut(s)	313, 346, 445, 502
BtsIMutI	CAGTG	3 cut(s)	147, 160, 382
Cfr10I	RCCGGY	1 cut(s)	500
Cfr13I	GGNCC	2 cut(s)	210, 262
Csp6I	GTAC	1 cut(s)	624
CspCI	CAANNNNNGTGG	2 cut(s)	565, 600
CviAII	CATG	3 cut(s)	89, 203, 274
CviJI	RGCY	9 cut(s)	104, 143, 163, 176, 194, 280, 316, 517, 557
CviKI_1	RGCY	9 cut(s)	104, 143, 163, 176, 194, 280, 316, 517, 557
CviQI	GTAC	1 cut(s)	624
DdeI	CTNAG	2 cut(s)	366, 477
DpnI	GATC	4 cut(s)	45, 167, 335, 374
DpnII	GATC	4 cut(s)	43, 165, 333, 372
DrdI	GACNNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	260
Eco130I	CCWWGG	5 cut(s)	112, 351, 421, 492, 613
Eco47I	GGWCC	2 cut(s)	210, 262
Eco81I	CCTNAGG	1 cut(s)	366
EcoRII	CCWGG	2 cut(s)	303, 527
EcoT14I	CCWWGG	5 cut(s)	112, 351, 421, 492, 613
ErhI	CCWWGG	5 cut(s)	112, 351, 421, 492, 613
FaeI	CATG	3 cut(s)	92, 206, 277
FalI	AAGNNNNNCTT	4 cut(s)	405, 437, 698, 730
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	3 cut(s)	88, 202, 273
FauNDI	CATATG	1 cut(s)	565
Fnu4HI	GCNGC	4 cut(s)	177, 192, 552, 555
FokI	GGATG	4 cut(s)	320, 353, 452, 509
Fsp4HI	GCNGC	4 cut(s)	177, 192, 552, 555
GluI	GCNGC	4 cut(s)	177, 192, 552, 555
GsaI	CCCAGC	1 cut(s)	516
HapII	CCGG	1 cut(s)	501
Hin1II	CATG	3 cut(s)	92, 206, 277
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	1 cut(s)	184
HpaI	GTTAAC	1 cut(s)	301
HpaII	CCGG	1 cut(s)	501
HphI	GGTGA	5 cut(s)	118, 182, 356, 599, 698
Hpy166II	GTNNAC	2 cut(s)	199, 301
Hpy188I	TCNGA	3 cut(s)	239, 480, 645
Hpy188III	TCNNGA	4 cut(s)	226, 265, 292, 365
Hpy8I	GTNNAC	2 cut(s)	199, 301
HpyAV	CCTTC	2 cut(s)	394, 574
HpyCH4III	ACNGT	7 cut(s)	31, 86, 122, 155, 214, 454, 686
HpyCH4V	TGCA	2 cut(s)	179, 461
HpyF10VI	GCNNNNNNNGC	1 cut(s)	560
HpyF3I	CTNAG	2 cut(s)	366, 477
Hsp92II	CATG	3 cut(s)	92, 206, 277
KspAI	GTTAAC	1 cut(s)	301
Kzo9I	GATC	4 cut(s)	43, 165, 333, 372
Lsp1109I	GCAGC	4 cut(s)	163, 203, 563, 566
LweI	GCATC	3 cut(s)	430, 463, 487
MaeIII	GTNAC	2 cut(s)	448, 686
MalI	GATC	4 cut(s)	45, 167, 335, 374
MboI	GATC	4 cut(s)	43, 165, 333, 372
MboII	GAAGA	1 cut(s)	252
MfeI	CAATTG	1 cut(s)	648
MluCI	AATT	2 cut(s)	96, 648
MnlI	CCTC	6 cut(s)	166, 253, 261, 361, 661, 695
MseI	TTAA	2 cut(s)	300, 519
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	1 cut(s)	501
MspR9I	CCNGG	2 cut(s)	305, 529
MunI	CAATTG	1 cut(s)	648
Mva1269I	GAATGC	1 cut(s)	416
MvaI	CCWGG	2 cut(s)	305, 529
MwoI	GCNNNNNNNGC	1 cut(s)	560
NdeI	CATATG	1 cut(s)	565
NdeII	GATC	4 cut(s)	43, 165, 333, 372
NlaIII	CATG	3 cut(s)	92, 206, 277
NmuCI	GTSAC	1 cut(s)	686
PctI	GAATGC	1 cut(s)	416
PfeI	GAWTC	1 cut(s)	184
PkrI	GCNGC	4 cut(s)	178, 193, 553, 556
Psp6I	CCWGG	2 cut(s)	303, 527
PspFI	CCCAGC	1 cut(s)	512
PspGI	CCWGG	2 cut(s)	303, 527
PspPI	GGNCC	2 cut(s)	210, 262
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	1 cut(s)	625
RsaNI	GTAC	1 cut(s)	624
SaqAI	TTAA	2 cut(s)	300, 519
SatI	GCNGC	4 cut(s)	177, 192, 552, 555
Sau3AI	GATC	4 cut(s)	43, 165, 333, 372
Sau96I	GGNCC	2 cut(s)	210, 262
ScrFI	CCNGG	2 cut(s)	305, 529
SetI	ASST	8 cut(s)	196, 264, 282, 357, 559, 615, 672, 706
SfaNI	GCATC	3 cut(s)	430, 463, 487
SinI	GGWCC	2 cut(s)	210, 262
Sse9I	AATT	2 cut(s)	96, 648
SsiI	CCGC	1 cut(s)	549
StyD4I	CCNGG	2 cut(s)	303, 527
StyI	CCWWGG	5 cut(s)	112, 351, 421, 492, 613
TaaI	ACNGT	7 cut(s)	31, 86, 122, 155, 214, 454, 686
TasI	AATT	2 cut(s)	96, 648
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	2 cut(s)	300, 519
Tru9I	TTAA	2 cut(s)	300, 519
TscAI	CASTG	3 cut(s)	154, 160, 382
TseFI	GTSAC	1 cut(s)	686
TseI	GCWGC	4 cut(s)	176, 191, 551, 554
Tsp45I	GTSAC	1 cut(s)	686
TspDTI	ATGAA	4 cut(s)	219, 290, 413, 555
TspRI	CASTG	3 cut(s)	154, 160, 382
VpaK11BI	GGWCC	2 cut(s)	210, 262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.