Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003307

Physical Location & Seq

Genomic Coordinates Forward (+)

18784220 .. 18786955

Gene Structure 2736 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG169800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGACGATGATCAAGATTGTCTTTGCCATGTGTTACTCAAAGCTGAAATTGCCATTTCTATAGGGCTTCTAGATGAGATTGCAATACGGTTGAGAGACTCTGATGAGCAAGTGGCAGCTGTTTTAACAGATGATGGTTTTGATGAACAATATGAACATCATTTGGAACTTTTTAAGGATGAACTAGAGATGTTGGAAGATGAAATAGAGTTAGAAGAACTCGAAAAAATGGTGGAACTTGAACAAGAATTGAAAGAACTTGAACTGTTGGAGGTTGCAGGAGAAATGGAACAACTTGAAATGTTGGCTATTGAAGGTTCATATCCCTACTTAAACAATGGTGTGAACCCTGAGGCATTTGCTTATGATAAGGCTGGTGATGGAAACAAAGATATCATTCTCTGGGATGTTGCACCTCTCACCCTTGGTATCGAAACTGCTGGTGGTATTATGACTAAATTGATTCCCAGAAACACTGTGATCCCAACCAAGAAATCCCAGGTTTTCACCACTTATCAGGATCAGCAGAGTACAGTCTACATTCAGGTCTATGGGGGTGAAGGGAGTCTAACAAGATATTGCAGGATCCTTGGAAAATTTGAACTTACTGGCATTCCCCCAGCCCCAAGGGGTATTCCTCGGATTGAAGTCATGTTTGAAGTGGATACCAATGGTATCCTGAATGTCAAGGCAGAAGACAAGGGCACTGGCAAATCTGAGAAGATCACCATCACCAATGACAAGGGTTGCACAAGCCAAGAAGAAATTGAGTGCATAGTCAAAGAGGCAGAGGAGTTAGCTGATGAGGACCAGAAGGTGAAGGAGAGGATTGATGCCCATAATAGCCTGAAAAGTTTTATCTACAACTTGAAGAACCAGATCAACGAAATGGACAAGCTTGAGTATGATGAGAAGGATAAGCTTGAGACCGCTGTGAAGAAGGCCCTGGAATGGATGAAGGACAACCAGACCGCTGAGAAGGAGGACTATGAGGAGAAGATCAAGGAGGTTGAAGCAATCTGCAACGCTATCATCACAACTGTTTACCAGAGGTCAGGTGATACTCCTGTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0012505 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

358

Amino Acids

40.56

Weight (kDa)

4.35

Isoelectric Point (pI)

31.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	128 - 350	2.6e-66	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28540 AT5G42020 AT5G42020 AT5G42020
fragaria_vesca	FvH4_3g14480 FvH4_5g11500 FvH4_5g11500
malus_domestica	MD06G1113000.v1.1 MD14G1134100.v1.1
prunus_persica	Prupe.5G125900_v2.0.a1 Prupe.5G125900_v2.0.a1 Prupe.5G125900_v2.0.a1
pyrus_communis	pycom06g10560 pycom06g10570
rosa_chinensis	RchiOBHm_Chr5g0023851 RchiOBHm_Chr7g0186301
rosa_laevigata	RLG00000004851 RLG00000032740
rosa_multiflora	Rmu_co8308791.1_g000001 Rmu_sc0001372.1_g000006 Rmu_sc0018092.1_g000001 Rmu_ssc0000027.1_g000008
rosa_roxburghii	Rroxscaffold_1G00055390 Rroxscaffold_3G00268240
rosa_rugosa	Rorug05G0079800 Rorug06G0473100
rosa_samantha	Rh5AG169800 Rh5BG167100 Rh5CG182700 Rh5DG169200 Rh7AG067900 Rh7BG083700 Rh7CG080100 Rh7DG080700
rosa_wichuraiana	Rw5G015350 Rw7G006710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	537
AciI	CCGC	2 cut(s)	930, 972
AclWI	GGATC	4 cut(s)	475, 528, 580, 593
AcsI	RAATTY	1 cut(s)	596
AfaI	GTAC	1 cut(s)	532
AfiI	CCNNNNNNNGG	1 cut(s)	951
AjnI	CCWGG	2 cut(s)	498, 945
AluBI	AGCT	5 cut(s)	44, 119, 800, 898, 922
AluI	AGCT	5 cut(s)	44, 119, 800, 898, 922
Alw26I	GTCTC	2 cut(s)	90, 920
AlwI	GGATC	4 cut(s)	475, 528, 580, 593
AoxI	GGCC	1 cut(s)	942
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	596
AspS9I	GGNCC	2 cut(s)	808, 943
AsuHPI	GGTGA	8 cut(s)	389, 412, 499, 569, 718, 724, 829, 1070
AvaII	GGWCC	1 cut(s)	808
AxyI	CCTNAGG	1 cut(s)	351
BaeGI	GKGCMC	1 cut(s)	707
BaeI	ACNNNNGTAYC	1 cut(s)	1053
BamHI	GGATCC	1 cut(s)	585
BbsI	GAAGAC	1 cut(s)	702
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	3 cut(s)	128, 374, 737
BciT130I	CCWGG	2 cut(s)	500, 947
BciVI	GTATCC	2 cut(s)	658, 686
BclI	TGATCA	1 cut(s)	10
BcoDI	GTCTC	2 cut(s)	90, 920
BfaI	CTAG	2 cut(s)	71, 185
BfmI	CTRYAG	1 cut(s)	60
BfuI	GTATCC	2 cut(s)	658, 686
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	2 cut(s)	500, 947
Bme18I	GGWCC	1 cut(s)	808
BmgT120I	GGNCC	2 cut(s)	808, 943
BmiI	GGNNCC	1 cut(s)	587
BmrFI	CCNGG	2 cut(s)	500, 947
BmsI	GCATC	1 cut(s)	823
BpiI	GAAGAC	1 cut(s)	702
BpuEI	CTTGAG	2 cut(s)	920, 944
BsaBI	GATNNNNATC	1 cut(s)	728
BsaI	GGTCTC	1 cut(s)	920
BsaJI	CCNNGG	6 cut(s)	424, 498, 589, 626, 638, 945
Bsc4I	CCNNNNNNNGG	1 cut(s)	951
Bse1I	ACTGG	2 cut(s)	613, 712
Bse21I	CCTNAGG	1 cut(s)	351
Bse8I	GATNNNNATC	1 cut(s)	728
BseBI	CCWGG	2 cut(s)	500, 947
BseDI	CCNNGG	6 cut(s)	424, 498, 589, 626, 638, 945
BseGI	GGATG	3 cut(s)	184, 412, 960
BseJI	GATNNNNATC	1 cut(s)	728
BseLI	CCNNNNNNNGG	1 cut(s)	951
BseMII	CTCAG	3 cut(s)	342, 708, 966
BseNI	ACTGG	2 cut(s)	613, 712
BseRI	GAGGAG	2 cut(s)	806, 1007
BseSI	GKGCMC	1 cut(s)	707
BseXI	GCAGC	1 cut(s)	128
BseYI	CCCAGC	1 cut(s)	619
BshFI	GGCC	1 cut(s)	944
BslI	CCNNNNNNNGG	1 cut(s)	951
BsmAI	GTCTC	2 cut(s)	90, 920
BsmI	GAATGC	1 cut(s)	612
BsnI	GGCC	1 cut(s)	944
Bso31I	GGTCTC	1 cut(s)	920
Bsp1286I	GDGCHC	1 cut(s)	707
Bsp143I	GATC	7 cut(s)	10, 480, 520, 585, 723, 879, 999
BspACI	CCGC	2 cut(s)	930, 972
BspANI	GGCC	1 cut(s)	944
BspCNI	CTCAG	3 cut(s)	343, 709, 967
BspLI	GGNNCC	1 cut(s)	587
BspPI	GGATC	4 cut(s)	475, 528, 580, 593
BspTNI	GGTCTC	1 cut(s)	920
BsrI	ACTGG	2 cut(s)	613, 712
BssECI	CCNNGG	6 cut(s)	424, 498, 589, 626, 638, 945
BssMI	GATC	7 cut(s)	10, 480, 520, 585, 723, 879, 999
BssT1I	CCWWGG	3 cut(s)	424, 589, 626
Bst2UI	CCWGG	2 cut(s)	500, 947
Bst4CI	ACNGT	5 cut(s)	90, 267, 478, 535, 1042
BstDEI	CTNAG	3 cut(s)	351, 717, 975
BstF5I	GGATG	3 cut(s)	184, 412, 960
BstKTI	GATC	7 cut(s)	13, 483, 523, 588, 726, 882, 1002
BstMAI	GTCTC	2 cut(s)	90, 920
BstMBI	GATC	7 cut(s)	10, 480, 520, 585, 723, 879, 999
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	2 cut(s)	500, 947
BstSCI	CCNGG	2 cut(s)	498, 945
BstSFI	CTRYAG	1 cut(s)	60
BstSLI	GKGCMC	1 cut(s)	707
BstV1I	GCAGC	1 cut(s)	128
BstV2I	GAAGAC	1 cut(s)	702
BstX2I	RGATCY	1 cut(s)	585
BstYI	RGATCY	1 cut(s)	585
Bsu36I	CCTNAGG	1 cut(s)	351
BsuI	GTATCC	2 cut(s)	658, 686
BsuRI	GGCC	1 cut(s)	944
BtsCI	GGATG	3 cut(s)	184, 412, 960
BtsIMutI	CAGTG	2 cut(s)	474, 705
Cfr13I	GGNCC	2 cut(s)	808, 943
Csp6I	GTAC	1 cut(s)	531
CviAII	CATG	2 cut(s)	29, 652
CviQI	GTAC	1 cut(s)	531
DdeI	CTNAG	3 cut(s)	351, 717, 975
DpnI	GATC	7 cut(s)	12, 482, 522, 587, 725, 881, 1001
DpnII	GATC	7 cut(s)	10, 480, 520, 585, 723, 879, 999
Eco130I	CCWWGG	3 cut(s)	424, 589, 626
Eco31I	GGTCTC	1 cut(s)	920
Eco32I	GATATC	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	808
Eco81I	CCTNAGG	1 cut(s)	351
EcoO109I	RGGNCCY	1 cut(s)	943
EcoRII	CCWGG	2 cut(s)	498, 945
EcoRV	GATATC	1 cut(s)	394
EcoT14I	CCWWGG	3 cut(s)	424, 589, 626
ErhI	CCWWGG	3 cut(s)	424, 589, 626
FaeI	CATG	2 cut(s)	32, 655
FalI	AAGNNNNNCTT	1 cut(s)	38
FatI	CATG	2 cut(s)	28, 651
FbaI	TGATCA	1 cut(s)	10
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	3 cut(s)	191, 419, 967
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	2 cut(s)	71, 185
GluI	GCNGC	1 cut(s)	117
GsaI	CCCAGC	1 cut(s)	623
HaeIII	GGCC	1 cut(s)	944
Hin1II	CATG	2 cut(s)	32, 655
HindIII	AAGCTT	2 cut(s)	896, 920
HinfI	GANTC	3 cut(s)	98, 463, 565
HphI	GGTGA	8 cut(s)	389, 412, 499, 569, 718, 724, 829, 1070
Hpy166II	GTNNAC	3 cut(s)	346, 538, 1045
Hpy188I	TCNGA	3 cut(s)	103, 642, 718
Hpy188III	TCNNGA	4 cut(s)	14, 71, 518, 679
Hpy8I	GTNNAC	3 cut(s)	346, 538, 1045
HpyAV	CCTTC	8 cut(s)	308, 554, 808, 814, 907, 934, 952, 973
HpyCH4III	ACNGT	5 cut(s)	90, 267, 478, 535, 1042
HpyCH4V	TGCA	7 cut(s)	83, 278, 413, 582, 750, 774, 1023
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	3 cut(s)	351, 717, 975
Hsp92II	CATG	2 cut(s)	32, 655
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	7 cut(s)	10, 480, 520, 585, 723, 879, 999
Lsp1109I	GCAGC	1 cut(s)	128
LweI	GCATC	1 cut(s)	823
MaeI	CTAG	2 cut(s)	71, 185
MaeIII	GTNAC	1 cut(s)	33
MalI	GATC	7 cut(s)	12, 482, 522, 587, 725, 881, 1001
MboI	GATC	7 cut(s)	10, 480, 520, 585, 723, 879, 999
MboII	GAAGA	8 cut(s)	209, 227, 707, 733, 773, 883, 949, 1009
MflI	RGATCY	1 cut(s)	585
MhlI	GDGCHC	1 cut(s)	707
MluCI	AATT	5 cut(s)	48, 248, 458, 596, 765
MlyI	GAGTC	2 cut(s)	92, 574
MmeI	TCCRAC	2 cut(s)	174, 249
MseI	TTAA	4 cut(s)	125, 174, 332, 1075
MspA1I	CMGCKG	3 cut(s)	119, 932, 974
MspR9I	CCNGG	2 cut(s)	500, 947
Mva1269I	GAATGC	1 cut(s)	612
MvaI	CCWGG	2 cut(s)	500, 947
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	7 cut(s)	10, 480, 520, 585, 723, 879, 999
NlaIII	CATG	2 cut(s)	32, 655
NlaIV	GGNNCC	1 cut(s)	587
PctI	GAATGC	1 cut(s)	612
PfeI	GAWTC	1 cut(s)	463
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	2 cut(s)	92, 573
PpsI	GAGTC	2 cut(s)	92, 573
Psp6I	CCWGG	2 cut(s)	498, 945
PspFI	CCCAGC	1 cut(s)	619
PspGI	CCWGG	2 cut(s)	498, 945
PspN4I	GGNNCC	1 cut(s)	587
PspPI	GGNCC	2 cut(s)	808, 943
PsuI	RGATCY	1 cut(s)	585
PvuII	CAGCTG	1 cut(s)	119
RsaI	GTAC	1 cut(s)	532
RsaNI	GTAC	1 cut(s)	531
SaqAI	TTAA	4 cut(s)	125, 174, 332, 1075
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	7 cut(s)	10, 480, 520, 585, 723, 879, 999
Sau96I	GGNCC	2 cut(s)	808, 943
SchI	GAGTC	2 cut(s)	92, 574
ScrFI	CCNGG	2 cut(s)	500, 947
SduI	GDGCHC	1 cut(s)	707
SfaNI	GCATC	1 cut(s)	823
SfcI	CTRYAG	1 cut(s)	60
SinI	GGWCC	1 cut(s)	808
SmlI	CTYRAG	2 cut(s)	899, 923
SmoI	CTYRAG	2 cut(s)	899, 923
Sse9I	AATT	5 cut(s)	48, 248, 458, 596, 765
SsiI	CCGC	2 cut(s)	930, 972
SspMI	CTAG	2 cut(s)	71, 185
StyD4I	CCNGG	2 cut(s)	498, 945
StyI	CCWWGG	3 cut(s)	424, 589, 626
TaaI	ACNGT	5 cut(s)	90, 267, 478, 535, 1042
TaqI	TCGA	2 cut(s)	222, 432
TasI	AATT	5 cut(s)	48, 248, 458, 596, 765
TatI	WGTACW	1 cut(s)	530
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	4 cut(s)	125, 174, 332, 1075
Tru9I	TTAA	4 cut(s)	125, 174, 332, 1075
TscAI	CASTG	2 cut(s)	481, 712
TseI	GCWGC	1 cut(s)	116
TspDTI	ATGAA	6 cut(s)	159, 168, 195, 216, 309, 971
TspRI	CASTG	2 cut(s)	481, 712
VpaK11BI	GGWCC	1 cut(s)	808
XapI	RAATTY	1 cut(s)	596
XbaI	TCTAGA	1 cut(s)	70
XmiI	GTMKAC	1 cut(s)	537
XspI	CTAG	2 cut(s)	71, 185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.