Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003307

Physical Location & Seq

Genomic Coordinates Forward (+)

18263523 .. 18266260

Gene Structure 2738 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG182700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGAAATTGTTTTCGGTTAGAGTTCTGTTAGTCACATTTCCCGCCAATTCTTTCTTTCTTTCTTTCTTGTTCTCTGTTCTCCCTCATTGCGTTTCCGCTCTGCACTCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTCTTGCCTCATCGAAATGGACGATGATCAAGATTGTCTTTGCCATGTGTTACTCAAAGCTGAAATTGCCATTTCTATAGGGCTTCTAGATGAGATTGCAATACGGTTGAGAGACTCTGATGAGCAAGTGGCAGCTGTTTTAACAGATGATGGTTTTGATGAACAATATGAACATCATTTGGAACTTTTTAAGGATGAACTAGAGATGTTGGAAGATGAAATAGAGTTAGAAGAACTCGAAAAAATGGTGGAACTTGAACAAGAATTGAAAGAACTTGAACTGTTGGAGGTTGCAGGAGAAATGGAACAACTTGAAATGTTGGCTATTGAAGGTTCATATCCGTACTTAAACAATGGTGTGAACCCTGAGGCATTTGCTTATGATAAGGCTGGTGATGGAAACAAAGATATCATTCTCTGGGATGTTGCACCTCTCACCCTTGGTATCGAAACTGCTGGTGGTATTATGACTAAATTGATTCCCAGAAACACTGTGATCCCAACCAAGAAATCCCAGGTTTTCACCACTTATCAGGATCAGCAGAGTACAGTCTACATTCAGGTCTATGAGGGTGAAGGGAGTCTAACAAGATATTGCAGGATCCTTGGAAAATTTGAACTTACTGGCATTCCCCCAGCCCCAAGGGGTATTCCTCGGATTGAAGTCACGTTTGAAGTGGATACCAATGGTTTCCTGAATGTCAAGGCAGAAGACAAGGGCACTGGCAAATCTGAGAAGATCACCATCACCAATGACAAGGGTTGCACAAGCCAAGAAGAAATTGAGTGCATAGTCAAAGAGGCAGAGGAGTTAGCTGATGAGGACCAGAAGGTGAAGGAGAGGATTGATGCCCATAATAGCCTGAAAACTTTTATCTACAACTTGAAGAACCAGATCAACGAAATGGACAAGCTTGAGTATGATGAGAAGGATAAGCTTGAGACCGCTGTGAAGAAGGCCCTGGAATGGATGAAGGACAACCAGACCGCTGAGAAGGAGGACTATGAGGAGAAGCTCAAGGAGGTTGAAGCAATCTGCAACGCTATCATCACAACTGTTTACCAGAGGTCAGGTGATACTCCTGTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0012505 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

412

Amino Acids

46.54

Weight (kDa)

4.42

Isoelectric Point (pI)

32.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	182 - 404	4e-66	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28540 AT5G42020 AT5G42020 AT5G42020
fragaria_vesca	FvH4_3g14480 FvH4_5g11500 FvH4_5g11500
malus_domestica	MD06G1113000.v1.1 MD14G1134100.v1.1
prunus_persica	Prupe.5G125900_v2.0.a1 Prupe.5G125900_v2.0.a1 Prupe.5G125900_v2.0.a1
pyrus_communis	pycom06g10560 pycom06g10570
rosa_chinensis	RchiOBHm_Chr5g0023851 RchiOBHm_Chr7g0186301
rosa_laevigata	RLG00000004851 RLG00000032740
rosa_multiflora	Rmu_co8308791.1_g000001 Rmu_sc0001372.1_g000006 Rmu_sc0018092.1_g000001 Rmu_ssc0000027.1_g000008
rosa_roxburghii	Rroxscaffold_1G00055390 Rroxscaffold_3G00268240
rosa_rugosa	Rorug05G0079800 Rorug06G0473100
rosa_samantha	Rh5AG169800 Rh5BG167100 Rh5CG182700 Rh5DG169200 Rh7AG067900 Rh7BG083700 Rh7CG080100 Rh7DG080700
rosa_wichuraiana	Rw5G015350 Rw7G006710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	98
AccI	GTMKAC	1 cut(s)	699
AciI	CCGC	4 cut(s)	42, 96, 1092, 1134
AclWI	GGATC	4 cut(s)	637, 690, 742, 755
AcsI	RAATTY	1 cut(s)	758
AfaI	GTAC	2 cut(s)	491, 694
AfiI	CCNNNNNNNGG	1 cut(s)	1113
AjnI	CCWGG	2 cut(s)	660, 1107
AluBI	AGCT	6 cut(s)	206, 281, 962, 1060, 1084, 1162
AluI	AGCT	6 cut(s)	206, 281, 962, 1060, 1084, 1162
Alw26I	GTCTC	2 cut(s)	252, 1082
AlwI	GGATC	4 cut(s)	637, 690, 742, 755
AoxI	GGCC	1 cut(s)	1104
ApeKI	GCWGC	1 cut(s)	278
ApoI	RAATTY	1 cut(s)	758
AspS9I	GGNCC	2 cut(s)	970, 1105
AsuHPI	GGTGA	8 cut(s)	551, 574, 661, 731, 880, 886, 991, 1232
AvaII	GGWCC	1 cut(s)	970
AxyI	CCTNAGG	1 cut(s)	513
BaeGI	GKGCMC	1 cut(s)	869
BaeI	ACNNNNGTAYC	1 cut(s)	1215
BamHI	GGATCC	1 cut(s)	747
BbsI	GAAGAC	1 cut(s)	864
BbvI	GCAGC	1 cut(s)	290
BccI	CCATC	3 cut(s)	290, 536, 899
BciT130I	CCWGG	2 cut(s)	662, 1109
BciVI	GTATCC	1 cut(s)	820
BclI	TGATCA	1 cut(s)	172
BcoDI	GTCTC	2 cut(s)	252, 1082
BfaI	CTAG	2 cut(s)	233, 347
BfmI	CTRYAG	1 cut(s)	222
BfuI	GTATCC	1 cut(s)	820
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
Bme1390I	CCNGG	2 cut(s)	662, 1109
Bme18I	GGWCC	1 cut(s)	970
BmgT120I	GGNCC	2 cut(s)	970, 1105
BmiI	GGNNCC	1 cut(s)	749
BmrFI	CCNGG	2 cut(s)	662, 1109
BmsI	GCATC	1 cut(s)	985
BpiI	GAAGAC	1 cut(s)	864
BpuEI	CTTGAG	3 cut(s)	1082, 1106, 1148
BsaBI	GATNNNNATC	1 cut(s)	890
BsaI	GGTCTC	1 cut(s)	1082
BsaJI	CCNNGG	6 cut(s)	586, 660, 751, 788, 800, 1107
Bsc4I	CCNNNNNNNGG	1 cut(s)	1113
Bse1I	ACTGG	2 cut(s)	775, 874
Bse21I	CCTNAGG	1 cut(s)	513
Bse3DI	GCAATG	1 cut(s)	85
Bse8I	GATNNNNATC	1 cut(s)	890
BseBI	CCWGG	2 cut(s)	662, 1109
BseDI	CCNNGG	6 cut(s)	586, 660, 751, 788, 800, 1107
BseGI	GGATG	3 cut(s)	346, 574, 1122
BseJI	GATNNNNATC	1 cut(s)	890
BseLI	CCNNNNNNNGG	1 cut(s)	1113
BseMI	GCAATG	1 cut(s)	85
BseMII	CTCAG	3 cut(s)	504, 870, 1128
BseNI	ACTGG	2 cut(s)	775, 874
BseRI	GAGGAG	2 cut(s)	968, 1169
BseSI	GKGCMC	1 cut(s)	869
BseXI	GCAGC	1 cut(s)	290
BseYI	CCCAGC	1 cut(s)	781
BsgI	GTGCAG	1 cut(s)	86
BshFI	GGCC	1 cut(s)	1106
BslI	CCNNNNNNNGG	1 cut(s)	1113
BsmAI	GTCTC	2 cut(s)	252, 1082
BsmI	GAATGC	1 cut(s)	774
BsnI	GGCC	1 cut(s)	1106
Bso31I	GGTCTC	1 cut(s)	1082
Bsp1286I	GDGCHC	1 cut(s)	869
Bsp143I	GATC	6 cut(s)	172, 642, 682, 747, 885, 1041
BspACI	CCGC	4 cut(s)	42, 96, 1092, 1134
BspANI	GGCC	1 cut(s)	1106
BspCNI	CTCAG	3 cut(s)	505, 871, 1129
BspLI	GGNNCC	1 cut(s)	749
BspPI	GGATC	4 cut(s)	637, 690, 742, 755
BspTNI	GGTCTC	1 cut(s)	1082
BsrBI	CCGCTC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	85
BsrI	ACTGG	2 cut(s)	775, 874
BssECI	CCNNGG	6 cut(s)	586, 660, 751, 788, 800, 1107
BssMI	GATC	6 cut(s)	172, 642, 682, 747, 885, 1041
BssT1I	CCWWGG	3 cut(s)	586, 751, 788
Bst2UI	CCWGG	2 cut(s)	662, 1109
Bst4CI	ACNGT	5 cut(s)	252, 429, 640, 697, 1204
BstDEI	CTNAG	3 cut(s)	513, 879, 1137
BstF5I	GGATG	3 cut(s)	346, 574, 1122
BstKTI	GATC	6 cut(s)	175, 645, 685, 750, 888, 1044
BstMAI	GTCTC	2 cut(s)	252, 1082
BstMBI	GATC	6 cut(s)	172, 642, 682, 747, 885, 1041
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	2 cut(s)	662, 1109
BstSCI	CCNGG	2 cut(s)	660, 1107
BstSFI	CTRYAG	1 cut(s)	222
BstSLI	GKGCMC	1 cut(s)	869
BstV1I	GCAGC	1 cut(s)	290
BstV2I	GAAGAC	1 cut(s)	864
BstX2I	RGATCY	1 cut(s)	747
BstYI	RGATCY	1 cut(s)	747
Bsu36I	CCTNAGG	1 cut(s)	513
BsuI	GTATCC	1 cut(s)	820
BsuRI	GGCC	1 cut(s)	1106
BtsCI	GGATG	3 cut(s)	346, 574, 1122
BtsIMutI	CAGTG	2 cut(s)	636, 867
Cfr13I	GGNCC	2 cut(s)	970, 1105
Csp6I	GTAC	2 cut(s)	490, 693
CviAII	CATG	1 cut(s)	191
CviQI	GTAC	2 cut(s)	490, 693
DdeI	CTNAG	3 cut(s)	513, 879, 1137
DpnI	GATC	6 cut(s)	174, 644, 684, 749, 887, 1043
DpnII	GATC	6 cut(s)	172, 642, 682, 747, 885, 1041
Eco130I	CCWWGG	3 cut(s)	586, 751, 788
Eco31I	GGTCTC	1 cut(s)	1082
Eco32I	GATATC	1 cut(s)	556
Eco47I	GGWCC	1 cut(s)	970
Eco81I	CCTNAGG	1 cut(s)	513
EcoO109I	RGGNCCY	1 cut(s)	1105
EcoRII	CCWGG	2 cut(s)	660, 1107
EcoRV	GATATC	1 cut(s)	556
EcoT14I	CCWWGG	3 cut(s)	586, 751, 788
ErhI	CCWWGG	3 cut(s)	586, 751, 788
FaeI	CATG	1 cut(s)	194
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FatI	CATG	1 cut(s)	190
FauI	CCCGC	1 cut(s)	49
FbaI	TGATCA	1 cut(s)	172
FblI	GTMKAC	1 cut(s)	699
Fnu4HI	GCNGC	1 cut(s)	279
FokI	GGATG	3 cut(s)	353, 581, 1129
Fsp4HI	GCNGC	1 cut(s)	279
FspBI	CTAG	2 cut(s)	233, 347
GluI	GCNGC	1 cut(s)	279
GsaI	CCCAGC	1 cut(s)	785
HaeIII	GGCC	1 cut(s)	1106
Hin1II	CATG	1 cut(s)	194
HindIII	AAGCTT	2 cut(s)	1058, 1082
HinfI	GANTC	3 cut(s)	260, 625, 727
HphI	GGTGA	8 cut(s)	551, 574, 661, 731, 880, 886, 991, 1232
Hpy166II	GTNNAC	3 cut(s)	508, 700, 1207
Hpy188I	TCNGA	3 cut(s)	265, 804, 880
Hpy188III	TCNNGA	4 cut(s)	176, 233, 680, 841
Hpy8I	GTNNAC	3 cut(s)	508, 700, 1207
HpyAV	CCTTC	8 cut(s)	470, 716, 970, 976, 1069, 1096, 1114, 1135
HpyCH4III	ACNGT	5 cut(s)	252, 429, 640, 697, 1204
HpyCH4IV	ACGT	1 cut(s)	815
HpyCH4V	TGCA	8 cut(s)	103, 245, 440, 575, 744, 912, 936, 1185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	3 cut(s)	513, 879, 1137
HpySE526I	ACGT	1 cut(s)	815
Hsp92II	CATG	1 cut(s)	194
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	6 cut(s)	172, 642, 682, 747, 885, 1041
Lsp1109I	GCAGC	1 cut(s)	290
LweI	GCATC	1 cut(s)	985
MaeI	CTAG	2 cut(s)	233, 347
MaeII	ACGT	1 cut(s)	815
MaeIII	GTNAC	3 cut(s)	31, 195, 811
MalI	GATC	6 cut(s)	174, 644, 684, 749, 887, 1043
MbiI	CCGCTC	1 cut(s)	98
MboI	GATC	6 cut(s)	172, 642, 682, 747, 885, 1041
MboII	GAAGA	7 cut(s)	371, 389, 869, 895, 935, 1045, 1111
MflI	RGATCY	1 cut(s)	747
MhlI	GDGCHC	1 cut(s)	869
MluCI	AATT	7 cut(s)	5, 46, 210, 410, 620, 758, 927
MlyI	GAGTC	2 cut(s)	254, 736
MmeI	TCCRAC	2 cut(s)	336, 411
MseI	TTAA	4 cut(s)	287, 336, 494, 1237
MslI	CAYNNNNRTG	1 cut(s)	161
MspA1I	CMGCKG	3 cut(s)	281, 1094, 1136
MspR9I	CCNGG	2 cut(s)	662, 1109
Mva1269I	GAATGC	1 cut(s)	774
MvaI	CCWGG	2 cut(s)	662, 1109
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeII	GATC	6 cut(s)	172, 642, 682, 747, 885, 1041
NlaIII	CATG	1 cut(s)	194
NlaIV	GGNNCC	1 cut(s)	749
NmuCI	GTSAC	2 cut(s)	31, 811
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PctI	GAATGC	1 cut(s)	774
PfeI	GAWTC	1 cut(s)	625
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	2 cut(s)	254, 735
PpsI	GAGTC	2 cut(s)	254, 735
Psp6I	CCWGG	2 cut(s)	660, 1107
PspFI	CCCAGC	1 cut(s)	781
PspGI	CCWGG	2 cut(s)	660, 1107
PspN4I	GGNNCC	1 cut(s)	749
PspPI	GGNCC	2 cut(s)	970, 1105
PsuI	RGATCY	1 cut(s)	747
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	2 cut(s)	491, 694
RsaNI	GTAC	2 cut(s)	490, 693
RseI	CAYNNNNRTG	1 cut(s)	161
SaqAI	TTAA	4 cut(s)	287, 336, 494, 1237
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	6 cut(s)	172, 642, 682, 747, 885, 1041
Sau96I	GGNCC	2 cut(s)	970, 1105
SchI	GAGTC	2 cut(s)	254, 736
ScrFI	CCNGG	2 cut(s)	662, 1109
SduI	GDGCHC	1 cut(s)	869
SfaNI	GCATC	1 cut(s)	985
SfcI	CTRYAG	1 cut(s)	222
SinI	GGWCC	1 cut(s)	970
SmiMI	CAYNNNNRTG	1 cut(s)	161
SmlI	CTYRAG	3 cut(s)	1061, 1085, 1163
SmoI	CTYRAG	3 cut(s)	1061, 1085, 1163
Sse9I	AATT	7 cut(s)	5, 46, 210, 410, 620, 758, 927
SsiI	CCGC	4 cut(s)	42, 96, 1092, 1134
SspMI	CTAG	2 cut(s)	233, 347
StyD4I	CCNGG	2 cut(s)	660, 1107
StyI	CCWWGG	3 cut(s)	586, 751, 788
TaaI	ACNGT	5 cut(s)	252, 429, 640, 697, 1204
TaiI	ACGT	1 cut(s)	818
TaqI	TCGA	3 cut(s)	159, 384, 594
TasI	AATT	7 cut(s)	5, 46, 210, 410, 620, 758, 927
TatI	WGTACW	1 cut(s)	692
TfiI	GAWTC	1 cut(s)	625
Tru1I	TTAA	4 cut(s)	287, 336, 494, 1237
Tru9I	TTAA	4 cut(s)	287, 336, 494, 1237
TscAI	CASTG	2 cut(s)	643, 874
TseFI	GTSAC	2 cut(s)	31, 811
TseI	GCWGC	1 cut(s)	278
Tsp45I	GTSAC	2 cut(s)	31, 811
TspDTI	ATGAA	7 cut(s)	17, 321, 330, 357, 378, 471, 1133
TspGWI	ACGGA	1 cut(s)	477
TspRI	CASTG	2 cut(s)	643, 874
VpaK11BI	GGWCC	1 cut(s)	970
XapI	RAATTY	1 cut(s)	758
XbaI	TCTAGA	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	699
XspI	CTAG	2 cut(s)	233, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.