Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001372.1

Orthogroup ID

OG0003307

Physical Location & Seq

Genomic Coordinates Reverse (-)

38861 .. 40539

Gene Structure 1679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001372.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ctgggtgtcgttttccctcgtgcaagagcagaggagagagatgggttgatttgtacgacacgtcgttgttcggctaacaaaaagcttctagatgagattgcaatacggttgagagactctgatgagcaagtggcagctgttttaacagatgatggttttgatgaacaatatgaacatcatttggaactttttaaggatgaactagagatgttggaagatgaaatggtggaacttgaacaagaattgaaagaacttgaactgttggaggttgcaggagaaatggaacaacttgaaatgttggctattgaaggttcatatccctacttaaacaatggtgtgaaccctgaggcatttgcttatgataaggctggtgatggaaacaaagatatcattctctgggatgttgcacctctcacccttggtatcgaaactgctggtggtattatgactaaattgattcccagaaacactgtgatcccaaccaagaaatcccaggttttcaccacttatcaggatcagcagagtacagtctacattcaggtctatgggggtgaagggagtctaacaagatattgcaggatccttggaaaatttgaacttactggcattcccccagccccaaggggtattcctcggattgaagtcatgtttgaagtggataccaatggtatcctgaatgtcaaggcagaagacaagggcactggcaaatctgagaagatcaccatcaccaatgacaagggttgcacaagccaagaagaaattgagtgcatagtcaaagaggcagaggagttagctgatgaggaccagaaggtgaaggagaggattgatgctcataatagcctgaaaacttttatctacaacttgaagaaccagatcaacgaaatggacaagcttgagtatgatgagaaggataagcttgagaccgctgtgaagaaggccctggaatggatgaaggacaaccagaccgctgagaaggaggactatgaggagaagctcaaggaggttgaagcaatctgcaacgctatcatcacaactgtttaccagaggtcaggtgatactcctgtggattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0012505 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

356

Amino Acids

40.33

Weight (kDa)

4.53

Isoelectric Point (pI)

30.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28540 AT5G42020 AT5G42020 AT5G42020
fragaria_vesca	FvH4_3g14480 FvH4_5g11500 FvH4_5g11500
malus_domestica	MD06G1113000.v1.1 MD14G1134100.v1.1
prunus_persica	Prupe.5G125900_v2.0.a1 Prupe.5G125900_v2.0.a1 Prupe.5G125900_v2.0.a1
pyrus_communis	pycom06g10560 pycom06g10570
rosa_chinensis	RchiOBHm_Chr5g0023851 RchiOBHm_Chr7g0186301
rosa_laevigata	RLG00000004851 RLG00000032740
rosa_multiflora	Rmu_co8308791.1_g000001 Rmu_sc0001372.1_g000006 Rmu_sc0018092.1_g000001 Rmu_ssc0000027.1_g000008
rosa_roxburghii	Rroxscaffold_1G00055390 Rroxscaffold_3G00268240
rosa_rugosa	Rorug05G0079800 Rorug06G0473100
rosa_samantha	Rh5AG169800 Rh5BG167100 Rh5CG182700 Rh5DG169200 Rh7AG067900 Rh7BG083700 Rh7CG080100 Rh7DG080700
rosa_wichuraiana	Rw5G015350 Rw7G006710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	531
AciI	CCGC	2 cut(s)	924, 966
AclWI	GGATC	4 cut(s)	469, 522, 574, 587
AcsI	RAATTY	1 cut(s)	590
AfaI	GTAC	2 cut(s)	55, 526
AfiI	CCNNNNNNNGG	1 cut(s)	945
AflIII	ACRYGT	1 cut(s)	59
AjiI	CACGTC	1 cut(s)	62
AjnI	CCWGG	2 cut(s)	492, 939
AluBI	AGCT	6 cut(s)	85, 137, 794, 892, 916, 994
AluI	AGCT	6 cut(s)	85, 137, 794, 892, 916, 994
Alw26I	GTCTC	2 cut(s)	108, 914
AlwI	GGATC	4 cut(s)	469, 522, 574, 587
AoxI	GGCC	1 cut(s)	936
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	1 cut(s)	590
AspS9I	GGNCC	2 cut(s)	802, 937
AsuHPI	GGTGA	8 cut(s)	383, 406, 493, 563, 712, 718, 823, 1064
AvaII	GGWCC	1 cut(s)	802
AxyI	CCTNAGG	1 cut(s)	345
BaeGI	GKGCMC	1 cut(s)	701
BaeI	ACNNNNGTAYC	1 cut(s)	1047
BamHI	GGATCC	1 cut(s)	579
BauI	CACGAG	1 cut(s)	18
BbsI	GAAGAC	1 cut(s)	696
BbvI	GCAGC	1 cut(s)	146
BccI	CCATC	4 cut(s)	35, 146, 368, 731
BciT130I	CCWGG	2 cut(s)	494, 941
BciVI	GTATCC	2 cut(s)	652, 680
BcoDI	GTCTC	2 cut(s)	108, 914
BfaI	CTAG	2 cut(s)	89, 203
BfuI	GTATCC	2 cut(s)	652, 680
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	2 cut(s)	494, 941
Bme18I	GGWCC	1 cut(s)	802
BmgBI	CACGTC	1 cut(s)	62
BmgT120I	GGNCC	2 cut(s)	802, 937
BmiI	GGNNCC	1 cut(s)	581
BmrFI	CCNGG	2 cut(s)	494, 941
BmsI	GCATC	1 cut(s)	817
BpiI	GAAGAC	1 cut(s)	696
BpuEI	CTTGAG	3 cut(s)	914, 938, 980
BsaBI	GATNNNNATC	1 cut(s)	722
BsaI	GGTCTC	1 cut(s)	914
BsaJI	CCNNGG	6 cut(s)	418, 492, 583, 620, 632, 939
Bsc4I	CCNNNNNNNGG	1 cut(s)	945
Bse1I	ACTGG	2 cut(s)	607, 706
Bse21I	CCTNAGG	1 cut(s)	345
Bse8I	GATNNNNATC	1 cut(s)	722
BseBI	CCWGG	2 cut(s)	494, 941
BseDI	CCNNGG	6 cut(s)	418, 492, 583, 620, 632, 939
BseGI	GGATG	3 cut(s)	202, 406, 954
BseJI	GATNNNNATC	1 cut(s)	722
BseLI	CCNNNNNNNGG	1 cut(s)	945
BseMII	CTCAG	3 cut(s)	336, 702, 960
BseNI	ACTGG	2 cut(s)	607, 706
BseRI	GAGGAG	3 cut(s)	47, 800, 1001
BseSI	GKGCMC	1 cut(s)	701
BseXI	GCAGC	1 cut(s)	146
BseYI	CCCAGC	1 cut(s)	613
BshFI	GGCC	1 cut(s)	938
BslI	CCNNNNNNNGG	1 cut(s)	945
BsmAI	GTCTC	2 cut(s)	108, 914
BsmI	GAATGC	1 cut(s)	606
BsnI	GGCC	1 cut(s)	938
Bso31I	GGTCTC	1 cut(s)	914
Bsp1286I	GDGCHC	1 cut(s)	701
Bsp143I	GATC	5 cut(s)	474, 514, 579, 717, 873
BspACI	CCGC	2 cut(s)	924, 966
BspANI	GGCC	1 cut(s)	938
BspCNI	CTCAG	3 cut(s)	337, 703, 961
BspLI	GGNNCC	1 cut(s)	581
BspPI	GGATC	4 cut(s)	469, 522, 574, 587
BspTNI	GGTCTC	1 cut(s)	914
BsrI	ACTGG	2 cut(s)	607, 706
BssECI	CCNNGG	6 cut(s)	418, 492, 583, 620, 632, 939
BssMI	GATC	5 cut(s)	474, 514, 579, 717, 873
BssSI	CACGAG	1 cut(s)	18
BssT1I	CCWWGG	3 cut(s)	418, 583, 620
Bst2BI	CACGAG	1 cut(s)	18
Bst2UI	CCWGG	2 cut(s)	494, 941
Bst4CI	ACNGT	5 cut(s)	108, 261, 472, 529, 1036
BstDEI	CTNAG	3 cut(s)	345, 711, 969
BstF5I	GGATG	3 cut(s)	202, 406, 954
BstKTI	GATC	5 cut(s)	477, 517, 582, 720, 876
BstMAI	GTCTC	2 cut(s)	108, 914
BstMBI	GATC	5 cut(s)	474, 514, 579, 717, 873
BstNI	CCWGG	2 cut(s)	494, 941
BstSCI	CCNGG	2 cut(s)	492, 939
BstSLI	GKGCMC	1 cut(s)	701
BstV1I	GCAGC	1 cut(s)	146
BstV2I	GAAGAC	1 cut(s)	696
BstX2I	RGATCY	1 cut(s)	579
BstYI	RGATCY	1 cut(s)	579
Bsu36I	CCTNAGG	1 cut(s)	345
BsuI	GTATCC	2 cut(s)	652, 680
BsuRI	GGCC	1 cut(s)	938
BtrI	CACGTC	1 cut(s)	62
BtsCI	GGATG	3 cut(s)	202, 406, 954
BtsIMutI	CAGTG	2 cut(s)	468, 699
Cfr13I	GGNCC	2 cut(s)	802, 937
Csp6I	GTAC	2 cut(s)	54, 525
CviAII	CATG	1 cut(s)	646
CviQI	GTAC	2 cut(s)	54, 525
DdeI	CTNAG	3 cut(s)	345, 711, 969
DpnI	GATC	5 cut(s)	476, 516, 581, 719, 875
DpnII	GATC	5 cut(s)	474, 514, 579, 717, 873
Eco130I	CCWWGG	3 cut(s)	418, 583, 620
Eco31I	GGTCTC	1 cut(s)	914
Eco32I	GATATC	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	802
Eco81I	CCTNAGG	1 cut(s)	345
EcoO109I	RGGNCCY	1 cut(s)	937
EcoRII	CCWGG	2 cut(s)	492, 939
EcoRV	GATATC	1 cut(s)	388
EcoT14I	CCWWGG	3 cut(s)	418, 583, 620
ErhI	CCWWGG	3 cut(s)	418, 583, 620
FaeI	CATG	1 cut(s)	649
FatI	CATG	1 cut(s)	645
FblI	GTMKAC	1 cut(s)	531
Fnu4HI	GCNGC	1 cut(s)	135
FokI	GGATG	3 cut(s)	209, 413, 961
Fsp4HI	GCNGC	1 cut(s)	135
FspBI	CTAG	2 cut(s)	89, 203
GluI	GCNGC	1 cut(s)	135
GsaI	CCCAGC	1 cut(s)	617
HaeIII	GGCC	1 cut(s)	938
Hin1II	CATG	1 cut(s)	649
HindIII	AAGCTT	3 cut(s)	83, 890, 914
HinfI	GANTC	3 cut(s)	116, 457, 559
HphI	GGTGA	8 cut(s)	383, 406, 493, 563, 712, 718, 823, 1064
Hpy166II	GTNNAC	3 cut(s)	340, 532, 1039
Hpy188I	TCNGA	3 cut(s)	121, 636, 712
Hpy188III	TCNNGA	3 cut(s)	89, 512, 673
Hpy8I	GTNNAC	3 cut(s)	340, 532, 1039
Hpy99I	CGWCG	1 cut(s)	66
HpyAV	CCTTC	8 cut(s)	302, 548, 802, 808, 901, 928, 946, 967
HpyCH4III	ACNGT	5 cut(s)	108, 261, 472, 529, 1036
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	8 cut(s)	23, 101, 272, 407, 576, 744, 768, 1017
HpyF3I	CTNAG	3 cut(s)	345, 711, 969
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	1 cut(s)	649
Kzo9I	GATC	5 cut(s)	474, 514, 579, 717, 873
Lsp1109I	GCAGC	1 cut(s)	146
LweI	GCATC	1 cut(s)	817
MaeI	CTAG	2 cut(s)	89, 203
MaeII	ACGT	1 cut(s)	61
MalI	GATC	5 cut(s)	476, 516, 581, 719, 875
MboI	GATC	5 cut(s)	474, 514, 579, 717, 873
MboII	GAAGA	6 cut(s)	227, 701, 727, 767, 877, 943
MflI	RGATCY	1 cut(s)	579
MhlI	GDGCHC	1 cut(s)	701
MluCI	AATT	4 cut(s)	242, 452, 590, 759
MlyI	GAGTC	2 cut(s)	110, 568
MmeI	TCCRAC	2 cut(s)	192, 243
MseI	TTAA	4 cut(s)	143, 192, 326, 1069
MspA1I	CMGCKG	3 cut(s)	137, 926, 968
MspR9I	CCNGG	2 cut(s)	494, 941
Mva1269I	GAATGC	1 cut(s)	606
MvaI	CCWGG	2 cut(s)	494, 941
NdeII	GATC	5 cut(s)	474, 514, 579, 717, 873
NlaIII	CATG	1 cut(s)	649
NlaIV	GGNNCC	1 cut(s)	581
PctI	GAATGC	1 cut(s)	606
PfeI	GAWTC	1 cut(s)	457
PkrI	GCNGC	1 cut(s)	136
PleI	GAGTC	2 cut(s)	110, 567
PpsI	GAGTC	2 cut(s)	110, 567
Psp6I	CCWGG	2 cut(s)	492, 939
PspFI	CCCAGC	1 cut(s)	613
PspGI	CCWGG	2 cut(s)	492, 939
PspN4I	GGNNCC	1 cut(s)	581
PspPI	GGNCC	2 cut(s)	802, 937
PsuI	RGATCY	1 cut(s)	579
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	2 cut(s)	55, 526
RsaNI	GTAC	2 cut(s)	54, 525
SaqAI	TTAA	4 cut(s)	143, 192, 326, 1069
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	5 cut(s)	474, 514, 579, 717, 873
Sau96I	GGNCC	2 cut(s)	802, 937
SchI	GAGTC	2 cut(s)	110, 568
ScrFI	CCNGG	2 cut(s)	494, 941
SduI	GDGCHC	1 cut(s)	701
SfaNI	GCATC	1 cut(s)	817
SinI	GGWCC	1 cut(s)	802
SmlI	CTYRAG	3 cut(s)	893, 917, 995
SmoI	CTYRAG	3 cut(s)	893, 917, 995
Sse9I	AATT	4 cut(s)	242, 452, 590, 759
SsiI	CCGC	2 cut(s)	924, 966
SspMI	CTAG	2 cut(s)	89, 203
StyD4I	CCNGG	2 cut(s)	492, 939
StyI	CCWWGG	3 cut(s)	418, 583, 620
TaaI	ACNGT	5 cut(s)	108, 261, 472, 529, 1036
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	426
TasI	AATT	4 cut(s)	242, 452, 590, 759
TatI	WGTACW	1 cut(s)	524
TfiI	GAWTC	1 cut(s)	457
Tru1I	TTAA	4 cut(s)	143, 192, 326, 1069
Tru9I	TTAA	4 cut(s)	143, 192, 326, 1069
TscAI	CASTG	2 cut(s)	475, 706
TseI	GCWGC	1 cut(s)	134
TspDTI	ATGAA	6 cut(s)	177, 186, 213, 234, 303, 965
TspRI	CASTG	2 cut(s)	475, 706
VpaK11BI	GGWCC	1 cut(s)	802
XapI	RAATTY	1 cut(s)	590
XbaI	TCTAGA	1 cut(s)	88
XmiI	GTMKAC	1 cut(s)	531
XspI	CTAG	2 cut(s)	89, 203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.