Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018092.1

Orthogroup ID

OG0003307

Physical Location & Seq

Genomic Coordinates Reverse (-)

1103 .. 2018

Gene Structure 916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018092.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atgtttgtattcaatgcagatattcttctcttggatgttgcacctcttacccttggtattgagactgttggtggagtgatgaccaagttgatccccagaaacactgtgatcccaaccaagaagtcccaagttttcaccacttaccaggatcagcagactactgtctccattcaggtctttgagggtgaaaggagtctcacaaaggattgtagaaaccttggaaagttcgaccttacaggaattcctccagctccaaggggtactcctcagatcgaagtcaccttcgaagtggatgccaatggtatcctgaatgtcaaggcagaagacaagggcactggtaaatctgagaagatcaccatcaccaacgacaagggtcgtctgagccaggaggagattgaccgcatggttaaggaggccgaggagtttgctgaggaagacaagaaggtcaaggagagaattgacgcccgtaacagcctcgaaacctacacttacaacatgaagaaccaagtcaatgacaaggacaagcttgctgacaagctcgagtctgatgagaaggagaagattgagaccgcagtgaaggaagcccttgaatggctggacgacaaccagaccgctgagaaggaagactatgaagagaagcttaaggaggttgaagccgtctgcaaccccatcatcacagctgtctaccagaggtcaggtggcgccccaggcggtgaatcagcatccgaggatgatgattctcatgacgagctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0012505 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

251

Amino Acids

28.05

Weight (kDa)

4.55

Isoelectric Point (pI)

27.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28540 AT5G42020 AT5G42020 AT5G42020
fragaria_vesca	FvH4_3g14480 FvH4_5g11500 FvH4_5g11500
malus_domestica	MD06G1113000.v1.1 MD14G1134100.v1.1
prunus_persica	Prupe.5G125900_v2.0.a1 Prupe.5G125900_v2.0.a1 Prupe.5G125900_v2.0.a1
pyrus_communis	pycom06g10560 pycom06g10570
rosa_chinensis	RchiOBHm_Chr5g0023851 RchiOBHm_Chr7g0186301
rosa_laevigata	RLG00000004851 RLG00000032740
rosa_multiflora	Rmu_co8308791.1_g000001 Rmu_sc0001372.1_g000006 Rmu_sc0018092.1_g000001 Rmu_ssc0000027.1_g000008
rosa_roxburghii	Rroxscaffold_1G00055390 Rroxscaffold_3G00268240
rosa_rugosa	Rorug05G0079800 Rorug06G0473100
rosa_samantha	Rh5AG169800 Rh5BG167100 Rh5CG182700 Rh5DG169200 Rh7AG067900 Rh7BG083700 Rh7CG080100 Rh7DG080700
rosa_wichuraiana	Rw5G015350 Rw7G006710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	443
AccB1I	GGYRCC	1 cut(s)	701
AccI	GTMKAC	1 cut(s)	684
AciI	CCGC	4 cut(s)	400, 570, 612, 711
AclWI	GGATC	3 cut(s)	85, 103, 156
AcsI	RAATTY	1 cut(s)	240
AcyI	GRCGYC	2 cut(s)	462, 702
AfaI	GTAC	1 cut(s)	262
AfiI	CCNNNNNNNGG	1 cut(s)	591
AflII	CTTAAG	1 cut(s)	641
AgsI	TTSAA	3 cut(s)	13, 590, 653
AjnI	CCWGG	3 cut(s)	144, 384, 706
AluBI	AGCT	6 cut(s)	251, 526, 538, 640, 680, 751
AluI	AGCT	6 cut(s)	251, 526, 538, 640, 680, 751
Alw21I	GWGCWC	1 cut(s)	753
Alw26I	GTCTC	4 cut(s)	56, 169, 200, 560
AlwI	GGATC	3 cut(s)	85, 103, 156
Ama87I	CYCGRG	1 cut(s)	539
AoxI	GGCC	1 cut(s)	414
ApoI	RAATTY	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	704
AsuHPI	GGTGA	6 cut(s)	127, 197, 271, 346, 352, 725
AsuII	TTCGAA	1 cut(s)	285
AvaI	CYCGRG	1 cut(s)	539
BaeGI	GKGCMC	1 cut(s)	335
BanI	GGYRCC	1 cut(s)	701
BanII	GRGCYC	1 cut(s)	753
BbsI	GAAGAC	3 cut(s)	330, 441, 630
Bbv12I	GWGCWC	1 cut(s)	753
BbvCI	CCTCAGC	1 cut(s)	429
BccI	CCATC	2 cut(s)	365, 677
BceAI	ACGGC	1 cut(s)	641
BcgI	CGANNNNNNTGC	4 cut(s)	275, 309, 407, 441
BciT130I	CCWGG	3 cut(s)	146, 386, 708
BciVI	GTATCC	1 cut(s)	314
BcoDI	GTCTC	4 cut(s)	56, 169, 200, 560
BfoI	RGCGCY	1 cut(s)	705
BfrI	CTTAAG	1 cut(s)	641
BfuI	GTATCC	1 cut(s)	314
Bme1390I	CCNGG	3 cut(s)	146, 386, 708
BmeT110I	CYCGRG	1 cut(s)	539
BmiI	GGNNCC	1 cut(s)	703
BmrFI	CCNGG	3 cut(s)	146, 386, 708
BmsI	GCATC	2 cut(s)	283, 731
BoxI	GACNNNNGTC	2 cut(s)	161, 372
BpiI	GAAGAC	3 cut(s)	330, 441, 630
BpmI	CTGGAG	1 cut(s)	231
Bpu10I	CCTNAGC	1 cut(s)	429
Bpu14I	TTCGAA	1 cut(s)	285
BsaBI	GATNNNNATC	1 cut(s)	356
BsaHI	GRCGYC	2 cut(s)	462, 702
BsaI	GGTCTC	1 cut(s)	560
BsaJI	CCNNGG	6 cut(s)	52, 217, 254, 417, 706, 726
Bsc4I	CCNNNNNNNGG	1 cut(s)	591
Bse1I	ACTGG	1 cut(s)	340
Bse8I	GATNNNNATC	1 cut(s)	356
BseBI	CCWGG	3 cut(s)	146, 386, 708
BseDI	CCNNGG	6 cut(s)	52, 217, 254, 417, 706, 726
BseGI	GGATG	4 cut(s)	40, 298, 722, 736
BseJI	GATNNNNATC	1 cut(s)	356
BseLI	CCNNNNNNNGG	1 cut(s)	591
BseMII	CTCAG	5 cut(s)	281, 336, 371, 420, 606
BseNI	ACTGG	1 cut(s)	340
BseRI	GAGGAG	3 cut(s)	255, 404, 434
BseSI	GKGCMC	1 cut(s)	335
BshFI	GGCC	1 cut(s)	416
BshNI	GGYRCC	1 cut(s)	701
BsiHKAI	GWGCWC	1 cut(s)	753
BsiHKCI	CYCGRG	1 cut(s)	539
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	1 cut(s)	591
BsmAI	GTCTC	4 cut(s)	56, 169, 200, 560
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	416
Bso31I	GGTCTC	1 cut(s)	560
BsoBI	CYCGRG	1 cut(s)	539
Bsp119I	TTCGAA	1 cut(s)	285
Bsp1286I	GDGCHC	2 cut(s)	335, 753
Bsp143I	GATC	5 cut(s)	90, 108, 148, 270, 351
BspACI	CCGC	4 cut(s)	400, 570, 612, 711
BspANI	GGCC	1 cut(s)	416
BspCNI	CTCAG	5 cut(s)	280, 337, 372, 421, 607
BspHI	TCATGA	1 cut(s)	742
BspLI	GGNNCC	1 cut(s)	703
BspPI	GGATC	3 cut(s)	85, 103, 156
BspT104I	TTCGAA	1 cut(s)	285
BspT107I	GGYRCC	1 cut(s)	701
BspTI	CTTAAG	1 cut(s)	641
BspTNI	GGTCTC	1 cut(s)	560
BsrI	ACTGG	1 cut(s)	340
BssECI	CCNNGG	6 cut(s)	52, 217, 254, 417, 706, 726
BssMI	GATC	5 cut(s)	90, 108, 148, 270, 351
BssNI	GRCGYC	2 cut(s)	462, 702
BssT1I	CCWWGG	3 cut(s)	52, 217, 254
Bst2UI	CCWGG	3 cut(s)	146, 386, 708
Bst4CI	ACNGT	3 cut(s)	67, 106, 163
Bst6I	CTCTTC	1 cut(s)	627
BstACI	GRCGYC	2 cut(s)	462, 702
BstAFI	CTTAAG	1 cut(s)	641
BstBI	TTCGAA	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	528
BstDEI	CTNAG	5 cut(s)	267, 345, 380, 429, 615
BstF5I	GGATG	4 cut(s)	40, 298, 722, 736
BstH2I	RGCGCY	1 cut(s)	705
BstHHI	GCGC	1 cut(s)	704
BstKTI	GATC	5 cut(s)	93, 111, 151, 273, 354
BstMAI	GTCTC	4 cut(s)	56, 169, 200, 560
BstMBI	GATC	5 cut(s)	90, 108, 148, 270, 351
BstMWI	GCNNNNNNNGC	1 cut(s)	708
BstNI	CCWGG	3 cut(s)	146, 386, 708
BstPAI	GACNNNNGTC	2 cut(s)	161, 372
BstSCI	CCNGG	3 cut(s)	144, 384, 706
BstSLI	GKGCMC	1 cut(s)	335
BstV2I	GAAGAC	3 cut(s)	330, 441, 630
BsuI	GTATCC	1 cut(s)	314
BsuRI	GGCC	1 cut(s)	416
BtsCI	GGATG	4 cut(s)	40, 298, 722, 736
BtsI	GCAGTG	1 cut(s)	579
BtsIMutI	CAGTG	3 cut(s)	102, 333, 579
Cac8I	GCNNGC	1 cut(s)	528
CciI	TCATGA	1 cut(s)	742
CfoI	GCGC	1 cut(s)	704
CseI	GACGC	1 cut(s)	470
Csp6I	GTAC	1 cut(s)	261
CviAII	CATG	3 cut(s)	403, 496, 743
CviQI	GTAC	1 cut(s)	261
DdeI	CTNAG	5 cut(s)	267, 345, 380, 429, 615
DinI	GGCGCC	1 cut(s)	703
DpnI	GATC	5 cut(s)	92, 110, 150, 272, 353
DpnII	GATC	5 cut(s)	90, 108, 148, 270, 351
DrdI	GACNNNNNNGTC	1 cut(s)	443
DseDI	GACNNNNNNGTC	1 cut(s)	443
Eam1104I	CTCTTC	1 cut(s)	627
EarI	CTCTTC	1 cut(s)	627
Ecl136II	GAGCTC	1 cut(s)	751
Eco130I	CCWWGG	3 cut(s)	52, 217, 254
Eco24I	GRGCYC	1 cut(s)	753
Eco31I	GGTCTC	1 cut(s)	560
Eco53kI	GAGCTC	1 cut(s)	751
Eco88I	CYCGRG	1 cut(s)	539
EcoICRI	GAGCTC	1 cut(s)	751
EcoRI	GAATTC	1 cut(s)	240
EcoRII	CCWGG	3 cut(s)	144, 384, 706
EcoT14I	CCWWGG	3 cut(s)	52, 217, 254
EcoT38I	GRGCYC	1 cut(s)	753
EgeI	GGCGCC	1 cut(s)	703
EheI	GGCGCC	1 cut(s)	703
ErhI	CCWWGG	3 cut(s)	52, 217, 254
FaeI	CATG	3 cut(s)	406, 499, 746
FaiI	YATR	4 cut(s)	404, 497, 630, 744
FalI	AAGNNNNNCTT	2 cut(s)	624, 656
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	3 cut(s)	402, 495, 742
FblI	GTMKAC	1 cut(s)	684
FokI	GGATG	4 cut(s)	47, 305, 709, 743
FriOI	GRGCYC	1 cut(s)	753
GlaI	GCGC	1 cut(s)	703
GsuI	CTGGAG	1 cut(s)	231
HaeII	RGCGCY	1 cut(s)	705
HaeIII	GGCC	1 cut(s)	416
HgaI	GACGC	1 cut(s)	470
HhaI	GCGC	1 cut(s)	704
Hin1I	GRCGYC	2 cut(s)	462, 702
Hin1II	CATG	3 cut(s)	406, 499, 746
Hin6I	GCGC	1 cut(s)	702
HinP1I	GCGC	1 cut(s)	702
HindIII	AAGCTT	2 cut(s)	524, 638
HinfI	GANTC	4 cut(s)	193, 542, 716, 737
HphI	GGTGA	6 cut(s)	127, 197, 271, 346, 352, 725
Hpy166II	GTNNAC	1 cut(s)	685
Hpy188I	TCNGA	5 cut(s)	270, 346, 381, 547, 727
Hpy188III	TCNNGA	2 cut(s)	307, 743
Hpy8I	GTNNAC	1 cut(s)	685
HpyAV	CCTTC	5 cut(s)	292, 436, 547, 571, 613
HpyCH4III	ACNGT	3 cut(s)	67, 106, 163
HpyCH4V	TGCA	3 cut(s)	17, 41, 663
HpyF10VI	GCNNNNNNNGC	1 cut(s)	708
HpyF3I	CTNAG	5 cut(s)	267, 345, 380, 429, 615
Hsp92I	GRCGYC	2 cut(s)	462, 702
Hsp92II	CATG	3 cut(s)	406, 499, 746
HspAI	GCGC	1 cut(s)	702
KasI	GGCGCC	1 cut(s)	701
Kzo9I	GATC	5 cut(s)	90, 108, 148, 270, 351
LmnI	GCTCC	1 cut(s)	256
LweI	GCATC	2 cut(s)	283, 731
MaeIII	GTNAC	2 cut(s)	277, 467
MalI	GATC	5 cut(s)	92, 110, 150, 272, 353
MboI	GATC	5 cut(s)	90, 108, 148, 270, 351
MboII	GAAGA	8 cut(s)	17, 335, 361, 446, 511, 571, 635, 644
MhlI	GDGCHC	2 cut(s)	335, 753
MluCI	AATT	2 cut(s)	240, 456
Mly113I	GGCGCC	1 cut(s)	702
MlyI	GAGTC	2 cut(s)	202, 551
MseI	TTAA	2 cut(s)	408, 642
MspA1I	CMGCKG	2 cut(s)	614, 680
MspCI	CTTAAG	1 cut(s)	641
MspR9I	CCNGG	3 cut(s)	146, 386, 708
MvaI	CCWGG	3 cut(s)	146, 386, 708
MwoI	GCNNNNNNNGC	1 cut(s)	708
NarI	GGCGCC	1 cut(s)	702
NdeII	GATC	5 cut(s)	90, 108, 148, 270, 351
NlaIII	CATG	3 cut(s)	406, 499, 746
NlaIV	GGNNCC	1 cut(s)	703
NmeAIII	GCCGAG	1 cut(s)	442
NmuCI	GTSAC	1 cut(s)	277
NspV	TTCGAA	1 cut(s)	285
PaeR7I	CTCGAG	1 cut(s)	539
PagI	TCATGA	1 cut(s)	742
PfeI	GAWTC	2 cut(s)	716, 737
PleI	GAGTC	2 cut(s)	201, 550
PluTI	GGCGCC	1 cut(s)	705
PpsI	GAGTC	2 cut(s)	201, 550
PshAI	GACNNNNGTC	2 cut(s)	161, 372
Psp124BI	GAGCTC	1 cut(s)	753
Psp6I	CCWGG	3 cut(s)	144, 384, 706
PspGI	CCWGG	3 cut(s)	144, 384, 706
PspN4I	GGNNCC	1 cut(s)	703
PspXI	VCTCGAGB	1 cut(s)	539
PvuII	CAGCTG	1 cut(s)	680
RsaI	GTAC	1 cut(s)	262
RsaNI	GTAC	1 cut(s)	261
SacI	GAGCTC	1 cut(s)	753
SaqAI	TTAA	2 cut(s)	408, 642
Sau3AI	GATC	5 cut(s)	90, 108, 148, 270, 351
SchI	GAGTC	2 cut(s)	202, 551
ScrFI	CCNGG	3 cut(s)	146, 386, 708
SduI	GDGCHC	2 cut(s)	335, 753
SfaNI	GCATC	2 cut(s)	283, 731
SfoI	GGCGCC	1 cut(s)	703
Sfr274I	CTCGAG	1 cut(s)	539
SfuI	TTCGAA	1 cut(s)	285
SlaI	CTCGAG	1 cut(s)	539
SmlI	CTYRAG	2 cut(s)	539, 641
SmoI	CTYRAG	2 cut(s)	539, 641
Sse9I	AATT	2 cut(s)	240, 456
SsiI	CCGC	4 cut(s)	400, 570, 612, 711
SspDI	GGCGCC	1 cut(s)	701
SstI	GAGCTC	1 cut(s)	753
StyD4I	CCNGG	3 cut(s)	144, 384, 706
StyI	CCWWGG	3 cut(s)	52, 217, 254
TaaI	ACNGT	3 cut(s)	67, 106, 163
TaqI	TCGA	5 cut(s)	228, 273, 285, 477, 540
TasI	AATT	2 cut(s)	240, 456
TfiI	GAWTC	2 cut(s)	716, 737
Tru1I	TTAA	2 cut(s)	408, 642
Tru9I	TTAA	2 cut(s)	408, 642
TscAI	CASTG	3 cut(s)	109, 340, 579
TseFI	GTSAC	1 cut(s)	277
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	2 cut(s)	512, 645
TspRI	CASTG	3 cut(s)	109, 340, 579
Vha464I	CTTAAG	1 cut(s)	641
XapI	RAATTY	1 cut(s)	240
XcmI	CCANNNNNNNNNTGG	1 cut(s)	695
XhoI	CTCGAG	1 cut(s)	539
XmiI	GTMKAC	1 cut(s)	684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.