Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003307

Physical Location & Seq

Genomic Coordinates Forward (+)

17565586 .. 17566496

Gene Structure 911 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG167100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGGTTGTTCTACCACAAATGATTACTTTGATGCCAAGGAACCAAACAAGGGTGTGAACCCTGAGGCATTTGCTTATGATAAGGCTGGTGATGGAAAGAATGATATCCTTCTCTGGGATGTTACACCTCTCACCCTTGGTATTGAAAATGCCGGTGGTATTATGACTAAATTATTGATTCCCAGATACACTTTGAGCCCAGGTTTTCACCACTTATCAGGATCAGCAGAGTACAATCTACTTTCAGGGTGCAGGATCCTTGGAAAATTTGAACTTACTGGCATTCCCCCAACCCCAAGGGGTATTCCTCGGATTGAAGTCACGTTTGAAGTGGATACCAATGGTATCCTGAATGTCAAGGCAGAAGACAAGGGCACTGGCCAATCTGAGAAGATCACCATCACCAATGATAAGGGTTGTGCAAGCCAAGAGGAAATTGAGTGCATAGTCAAAGAGGCAGAGGAGTTAGCTGATGAGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0012505 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

160

Amino Acids

17.36

Weight (kDa)

4.66

Isoelectric Point (pI)

28.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	8 - 159	6.8e-29	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28540 AT5G42020 AT5G42020 AT5G42020
fragaria_vesca	FvH4_3g14480 FvH4_5g11500 FvH4_5g11500
malus_domestica	MD06G1113000.v1.1 MD14G1134100.v1.1
prunus_persica	Prupe.5G125900_v2.0.a1 Prupe.5G125900_v2.0.a1 Prupe.5G125900_v2.0.a1
pyrus_communis	pycom06g10560 pycom06g10570
rosa_chinensis	RchiOBHm_Chr5g0023851 RchiOBHm_Chr7g0186301
rosa_laevigata	RLG00000004851 RLG00000032740
rosa_multiflora	Rmu_co8308791.1_g000001 Rmu_sc0001372.1_g000006 Rmu_sc0018092.1_g000001 Rmu_ssc0000027.1_g000008
rosa_roxburghii	Rroxscaffold_1G00055390 Rroxscaffold_3G00268240
rosa_rugosa	Rorug05G0079800 Rorug06G0473100
rosa_samantha	Rh5AG169800 Rh5BG167100 Rh5CG182700 Rh5DG169200 Rh7AG067900 Rh7BG083700 Rh7CG080100 Rh7DG080700
rosa_wichuraiana	Rw5G015350 Rw7G006710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	229, 250, 263
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	1 cut(s)	266
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	2 cut(s)	50, 115
AgsI	TTSAA	4 cut(s)	146, 272, 317, 329
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	1 cut(s)	470
AluI	AGCT	1 cut(s)	470
AlwI	GGATC	3 cut(s)	229, 250, 263
AoxI	GGCC	1 cut(s)	379
ApoI	RAATTY	1 cut(s)	266
AsuHPI	GGTGA	5 cut(s)	101, 124, 200, 388, 394
AxyI	CCTNAGG	1 cut(s)	63
BaeGI	GKGCMC	1 cut(s)	377
BalI	TGGCCA	1 cut(s)	381
BamHI	GGATCC	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	372
BccI	CCATC	2 cut(s)	86, 407
BciT130I	CCWGG	1 cut(s)	201
BciVI	GTATCC	2 cut(s)	328, 356
BfuI	GTATCC	2 cut(s)	328, 356
Bme1390I	CCNGG	1 cut(s)	201
BmiI	GGNNCC	2 cut(s)	42, 257
BmrFI	CCNGG	1 cut(s)	201
BmsI	GCATC	1 cut(s)	22
BpiI	GAAGAC	1 cut(s)	372
BsaBI	GATNNNNATC	1 cut(s)	398
BsaJI	CCNNGG	6 cut(s)	36, 136, 199, 259, 296, 308
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 115
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	2 cut(s)	283, 382
Bse21I	CCTNAGG	1 cut(s)	63
Bse8I	GATNNNNATC	1 cut(s)	398
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	6 cut(s)	36, 136, 199, 259, 296, 308
BseGI	GGATG	1 cut(s)	124
BseJI	GATNNNNATC	1 cut(s)	398
BseLI	CCNNNNNNNGG	2 cut(s)	50, 115
BseMII	CTCAG	2 cut(s)	54, 378
BseNI	ACTGG	2 cut(s)	283, 382
BseRI	GAGGAG	1 cut(s)	476
BseSI	GKGCMC	1 cut(s)	377
BsgI	GTGCAG	1 cut(s)	271
BshFI	GGCC	1 cut(s)	381
BsiSI	CCGG	1 cut(s)	153
BslI	CCNNNNNNNGG	2 cut(s)	50, 115
BsmI	GAATGC	1 cut(s)	282
BsnI	GGCC	1 cut(s)	381
Bsp1286I	GDGCHC	2 cut(s)	200, 377
Bsp143I	GATC	3 cut(s)	221, 255, 393
BspANI	GGCC	1 cut(s)	381
BspCNI	CTCAG	2 cut(s)	55, 379
BspLI	GGNNCC	2 cut(s)	42, 257
BspPI	GGATC	3 cut(s)	229, 250, 263
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	2 cut(s)	283, 382
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	6 cut(s)	36, 136, 199, 259, 296, 308
BssMI	GATC	3 cut(s)	221, 255, 393
BssT1I	CCWWGG	4 cut(s)	36, 136, 259, 296
Bst2UI	CCWGG	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	2 cut(s)	63, 387
BstF5I	GGATG	1 cut(s)	124
BstKTI	GATC	3 cut(s)	224, 258, 396
BstMBI	GATC	3 cut(s)	221, 255, 393
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	199
BstSLI	GKGCMC	1 cut(s)	377
BstV2I	GAAGAC	1 cut(s)	372
BstX2I	RGATCY	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	255
Bsu36I	CCTNAGG	1 cut(s)	63
BsuI	GTATCC	2 cut(s)	328, 356
BsuRI	GGCC	1 cut(s)	381
BtsCI	GGATG	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	375
Cac8I	GCNNGC	1 cut(s)	424
Cfr10I	RCCGGY	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	232
CviJI	RGCY	5 cut(s)	86, 198, 381, 426, 470
CviKI_1	RGCY	5 cut(s)	86, 198, 381, 426, 470
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	2 cut(s)	63, 387
DpnI	GATC	3 cut(s)	223, 257, 395
DpnII	GATC	3 cut(s)	221, 255, 393
EaeI	YGGCCR	1 cut(s)	379
Eco130I	CCWWGG	4 cut(s)	36, 136, 259, 296
Eco24I	GRGCYC	1 cut(s)	200
Eco32I	GATATC	1 cut(s)	106
Eco81I	CCTNAGG	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	199
EcoRV	GATATC	1 cut(s)	106
EcoT14I	CCWWGG	4 cut(s)	36, 136, 259, 296
EcoT38I	GRGCYC	1 cut(s)	200
ErhI	CCWWGG	4 cut(s)	36, 136, 259, 296
FaiI	YATR	3 cut(s)	78, 164, 446
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	381
HapII	CCGG	1 cut(s)	153
HinfI	GANTC	1 cut(s)	178
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	5 cut(s)	101, 124, 200, 388, 394
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	2 cut(s)	312, 388
Hpy188III	TCNNGA	2 cut(s)	219, 349
Hpy8I	GTNNAC	1 cut(s)	58
HpyAV	CCTTC	1 cut(s)	119
HpyCH4IV	ACGT	1 cut(s)	323
HpyCH4V	TGCA	3 cut(s)	252, 422, 444
HpyF3I	CTNAG	2 cut(s)	63, 387
HpySE526I	ACGT	1 cut(s)	323
Kzo9I	GATC	3 cut(s)	221, 255, 393
LweI	GCATC	1 cut(s)	22
MaeII	ACGT	1 cut(s)	323
MaeIII	GTNAC	2 cut(s)	121, 319
MalI	GATC	3 cut(s)	223, 257, 395
MboI	GATC	3 cut(s)	221, 255, 393
MboII	GAAGA	2 cut(s)	377, 403
MflI	RGATCY	1 cut(s)	255
MhlI	GDGCHC	2 cut(s)	200, 377
MlsI	TGGCCA	1 cut(s)	381
MluCI	AATT	3 cut(s)	170, 266, 435
MluNI	TGGCCA	1 cut(s)	381
MnlI	CCTC	6 cut(s)	58, 138, 318, 424, 448, 454
Mox20I	TGGCCA	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	381
Msp20I	TGGCCA	1 cut(s)	381
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	1 cut(s)	201
Mva1269I	GAATGC	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	201
NdeII	GATC	3 cut(s)	221, 255, 393
NlaIV	GGNNCC	2 cut(s)	42, 257
NmuCI	GTSAC	1 cut(s)	319
PctI	GAATGC	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	2 cut(s)	42, 257
PsuI	RGATCY	1 cut(s)	255
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
Sau3AI	GATC	3 cut(s)	221, 255, 393
ScrFI	CCNGG	1 cut(s)	201
SduI	GDGCHC	2 cut(s)	200, 377
SetI	ASST	4 cut(s)	130, 205, 326, 472
SfaNI	GCATC	1 cut(s)	22
Sse9I	AATT	3 cut(s)	170, 266, 435
StyD4I	CCNGG	1 cut(s)	199
StyI	CCWWGG	4 cut(s)	36, 136, 259, 296
TaiI	ACGT	1 cut(s)	326
TasI	AATT	3 cut(s)	170, 266, 435
TatI	WGTACW	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	178
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	1 cut(s)	319
Tsp45I	GTSAC	1 cut(s)	319
TspRI	CASTG	1 cut(s)	382
XapI	RAATTY	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.