Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003307

Physical Location & Seq

Genomic Coordinates Forward (+)

18531546 .. 18533334

Gene Structure 1789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032740

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGACGATGATCAAGATCGTCTTTGCCATGTGTTACTCGAAGCTGAAATTGCCATTTCTATAGGGCTTGTAGATGAGATTGCAAAATGGTTGAGAGACTCTGATGAGCAAGTGGCAGCTGTTTTAACAGATGATGGTTTTGATGAACAATATGAACATCATTTGGAACTTTTTAAGGATGAACTAGAGATGTTGGAAGCTGAAATAGAGTTAGAAGAACTCGAAAAAATGGTGGAACTTGAACAAGAATTGAAAGAACTTGAACTGTTGGAGGTTGCAGGAGAAATGGAACAACTTGAAATGTTGGCTATTGAAGGTTCATATCCGTACTTAAACAATGGTGTGAACCCTGAGGCATTTGCTTATGATAAGGCTGGTGATGGAAAGAAAGATATCATTCTCTGGGATGTTGCACCTCTCACCCTTGGTATCGAAACTGCTGGTGGTATTATGACTAAATTGATTCCCAGAAACACTGTGATCCCAACCAAGAAATCCCAGGTTTTCACCACTTATCAGGATCAGCAGAGTACAGTCTACATTCAGGTCTATGGGGGTGAAGGGAGTCTAACAAGATATTGCAGGATCCTTGGAAAATTTGAACTTACTGGCATTCCCCCAGCCCCAAGGTTTGTTTCTGCTCCAAAGTGTATGAGGAGATTTAATTGTAACTCATTACTCCATTGGACGGGTATTCCTCGGATTGAAGTCACGTTTGAAGTGGATACCAATGGTATCCTGAATGTCAAGGCAGAAGACAAGGGCACTGGCAAATCTGAGAAGATCACCATCACCAATGACAAGGGTTGCACAAGCCAAGAAGAAATTGACTGCATAGTCAAACAGGCAGAGGAGTTAGCTGATGAGGACCAGAAGGTGAAGGAGAGGATTGATGCCCATAACAGCCTGAAAAGTTTTATCTACAACTTGAAGAACCAGATCAACGAAATGGACAAGCTTGAGTATGATGAGAAGGATGAGCTTGAGACCGCTTTGAAGAAGGCCCTGGAATGGATGAAGGACAACCAGACCGCTGAGAAGGAGGACTATGAGGAGAAGCTCAAGGAGGTTGAAGCAATCTGCAATGCTATCATCACAACTGTTTACCAGAGGTCAGGTGATGCTCCTGTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0012505 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

379

Amino Acids

42.95

Weight (kDa)

4.44

Isoelectric Point (pI)

30.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	129 - 370	7.2e-56	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28540 AT5G42020 AT5G42020 AT5G42020
fragaria_vesca	FvH4_3g14480 FvH4_5g11500 FvH4_5g11500
malus_domestica	MD06G1113000.v1.1 MD14G1134100.v1.1
prunus_persica	Prupe.5G125900_v2.0.a1 Prupe.5G125900_v2.0.a1 Prupe.5G125900_v2.0.a1
pyrus_communis	pycom06g10560 pycom06g10570
rosa_chinensis	RchiOBHm_Chr5g0023851 RchiOBHm_Chr7g0186301
rosa_laevigata	RLG00000004851 RLG00000032740
rosa_multiflora	Rmu_co8308791.1_g000001 Rmu_sc0001372.1_g000006 Rmu_sc0018092.1_g000001 Rmu_ssc0000027.1_g000008
rosa_roxburghii	Rroxscaffold_1G00055390 Rroxscaffold_3G00268240
rosa_rugosa	Rorug05G0079800 Rorug06G0473100
rosa_samantha	Rh5AG169800 Rh5BG167100 Rh5CG182700 Rh5DG169200 Rh7AG067900 Rh7BG083700 Rh7CG080100 Rh7DG080700
rosa_wichuraiana	Rw5G015350 Rw7G006710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	836
AccI	GTMKAC	1 cut(s)	537
AciI	CCGC	2 cut(s)	990, 1032
AclWI	GGATC	4 cut(s)	475, 528, 580, 593
AcsI	RAATTY	1 cut(s)	596
AfaI	GTAC	2 cut(s)	329, 532
AfiI	CCNNNNNNNGG	2 cut(s)	688, 1011
AjnI	CCWGG	2 cut(s)	498, 1005
AjuI	GAANNNNNNNTTGG	2 cut(s)	619, 651
AluBI	AGCT	7 cut(s)	44, 119, 200, 860, 958, 982, 1060
AluI	AGCT	7 cut(s)	44, 119, 200, 860, 958, 982, 1060
Alw26I	GTCTC	2 cut(s)	90, 980
AlwI	GGATC	4 cut(s)	475, 528, 580, 593
AoxI	GGCC	1 cut(s)	1002
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	596
AspS9I	GGNCC	2 cut(s)	868, 1003
AsuHPI	GGTGA	8 cut(s)	389, 412, 499, 569, 778, 784, 889, 1130
AvaII	GGWCC	1 cut(s)	868
AxyI	CCTNAGG	1 cut(s)	351
BaeGI	GKGCMC	1 cut(s)	767
BamHI	GGATCC	1 cut(s)	585
BbsI	GAAGAC	1 cut(s)	762
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	3 cut(s)	128, 374, 797
BciT130I	CCWGG	2 cut(s)	500, 1007
BciVI	GTATCC	2 cut(s)	718, 746
BclI	TGATCA	1 cut(s)	10
BcoDI	GTCTC	2 cut(s)	90, 980
BfaI	CTAG	1 cut(s)	185
BfmI	CTRYAG	1 cut(s)	60
BfuI	GTATCC	2 cut(s)	718, 746
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	2 cut(s)	500, 1007
Bme18I	GGWCC	1 cut(s)	868
BmgT120I	GGNCC	2 cut(s)	868, 1003
BmiI	GGNNCC	1 cut(s)	587
BmrFI	CCNGG	2 cut(s)	500, 1007
BmsI	GCATC	2 cut(s)	883, 1111
BpiI	GAAGAC	1 cut(s)	762
BpuEI	CTTGAG	3 cut(s)	980, 1004, 1046
BsaBI	GATNNNNATC	2 cut(s)	15, 788
BsaI	GGTCTC	1 cut(s)	980
BsaJI	CCNNGG	6 cut(s)	424, 498, 589, 626, 698, 1005
Bsc4I	CCNNNNNNNGG	2 cut(s)	688, 1011
Bse1I	ACTGG	2 cut(s)	613, 772
Bse21I	CCTNAGG	1 cut(s)	351
Bse3DI	GCAATG	1 cut(s)	1090
Bse8I	GATNNNNATC	2 cut(s)	15, 788
BseBI	CCWGG	2 cut(s)	500, 1007
BseDI	CCNNGG	6 cut(s)	424, 498, 589, 626, 698, 1005
BseGI	GGATG	4 cut(s)	184, 412, 982, 1020
BseJI	GATNNNNATC	2 cut(s)	15, 788
BseLI	CCNNNNNNNGG	2 cut(s)	688, 1011
BseMI	GCAATG	1 cut(s)	1090
BseMII	CTCAG	3 cut(s)	342, 768, 1026
BseNI	ACTGG	2 cut(s)	613, 772
BseRI	GAGGAG	3 cut(s)	670, 866, 1067
BseSI	GKGCMC	1 cut(s)	767
BseXI	GCAGC	1 cut(s)	128
BseYI	CCCAGC	1 cut(s)	619
BshFI	GGCC	1 cut(s)	1004
BslI	CCNNNNNNNGG	2 cut(s)	688, 1011
BsmAI	GTCTC	2 cut(s)	90, 980
BsmI	GAATGC	1 cut(s)	612
BsnI	GGCC	1 cut(s)	1004
Bso31I	GGTCTC	1 cut(s)	980
Bsp1286I	GDGCHC	1 cut(s)	767
Bsp143I	GATC	7 cut(s)	10, 16, 480, 520, 585, 783, 939
BspACI	CCGC	2 cut(s)	990, 1032
BspANI	GGCC	1 cut(s)	1004
BspCNI	CTCAG	3 cut(s)	343, 769, 1027
BspLI	GGNNCC	1 cut(s)	587
BspPI	GGATC	4 cut(s)	475, 528, 580, 593
BspTNI	GGTCTC	1 cut(s)	980
BsrDI	GCAATG	1 cut(s)	1090
BsrI	ACTGG	2 cut(s)	613, 772
BssECI	CCNNGG	6 cut(s)	424, 498, 589, 626, 698, 1005
BssMI	GATC	7 cut(s)	10, 16, 480, 520, 585, 783, 939
BssT1I	CCWWGG	3 cut(s)	424, 589, 626
Bst2UI	CCWGG	2 cut(s)	500, 1007
Bst4CI	ACNGT	4 cut(s)	267, 478, 535, 1102
BstDEI	CTNAG	3 cut(s)	351, 777, 1035
BstF5I	GGATG	4 cut(s)	184, 412, 982, 1020
BstKTI	GATC	7 cut(s)	13, 19, 483, 523, 588, 786, 942
BstMAI	GTCTC	2 cut(s)	90, 980
BstMBI	GATC	7 cut(s)	10, 16, 480, 520, 585, 783, 939
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	2 cut(s)	500, 1007
BstSCI	CCNGG	2 cut(s)	498, 1005
BstSFI	CTRYAG	1 cut(s)	60
BstSLI	GKGCMC	1 cut(s)	767
BstV1I	GCAGC	1 cut(s)	128
BstV2I	GAAGAC	1 cut(s)	762
BstX2I	RGATCY	1 cut(s)	585
BstYI	RGATCY	1 cut(s)	585
Bsu36I	CCTNAGG	1 cut(s)	351
BsuI	GTATCC	2 cut(s)	718, 746
BsuRI	GGCC	1 cut(s)	1004
BtsCI	GGATG	4 cut(s)	184, 412, 982, 1020
BtsIMutI	CAGTG	2 cut(s)	474, 765
Cfr13I	GGNCC	2 cut(s)	868, 1003
Csp6I	GTAC	2 cut(s)	328, 531
CviAII	CATG	1 cut(s)	29
CviQI	GTAC	2 cut(s)	328, 531
DdeI	CTNAG	3 cut(s)	351, 777, 1035
DpnI	GATC	7 cut(s)	12, 18, 482, 522, 587, 785, 941
DpnII	GATC	7 cut(s)	10, 16, 480, 520, 585, 783, 939
DrdI	GACNNNNNNGTC	1 cut(s)	836
DseDI	GACNNNNNNGTC	1 cut(s)	836
Eco130I	CCWWGG	3 cut(s)	424, 589, 626
Eco31I	GGTCTC	1 cut(s)	980
Eco32I	GATATC	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	868
Eco81I	CCTNAGG	1 cut(s)	351
EcoO109I	RGGNCCY	1 cut(s)	1003
EcoRII	CCWGG	2 cut(s)	498, 1005
EcoRV	GATATC	1 cut(s)	394
EcoT14I	CCWWGG	3 cut(s)	424, 589, 626
ErhI	CCWWGG	3 cut(s)	424, 589, 626
FaeI	CATG	1 cut(s)	32
FalI	AAGNNNNNCTT	1 cut(s)	38
FatI	CATG	1 cut(s)	28
FbaI	TGATCA	1 cut(s)	10
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	4 cut(s)	191, 419, 989, 1027
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	1 cut(s)	117
GsaI	CCCAGC	1 cut(s)	623
HaeIII	GGCC	1 cut(s)	1004
Hin1II	CATG	1 cut(s)	32
HindIII	AAGCTT	1 cut(s)	956
HinfI	GANTC	3 cut(s)	98, 463, 565
HphI	GGTGA	8 cut(s)	389, 412, 499, 569, 778, 784, 889, 1130
Hpy166II	GTNNAC	3 cut(s)	346, 538, 1105
Hpy188I	TCNGA	3 cut(s)	103, 702, 778
Hpy188III	TCNNGA	3 cut(s)	14, 518, 739
Hpy8I	GTNNAC	3 cut(s)	346, 538, 1105
HpyAV	CCTTC	8 cut(s)	308, 554, 868, 874, 967, 994, 1012, 1033
HpyCH4III	ACNGT	4 cut(s)	267, 478, 535, 1102
HpyCH4IV	ACGT	1 cut(s)	713
HpyCH4V	TGCA	7 cut(s)	83, 278, 413, 582, 810, 834, 1083
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	3 cut(s)	351, 777, 1035
HpySE526I	ACGT	1 cut(s)	713
Hsp92II	CATG	1 cut(s)	32
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	7 cut(s)	10, 16, 480, 520, 585, 783, 939
LmnI	GCTCC	2 cut(s)	646, 1129
Lsp1109I	GCAGC	1 cut(s)	128
LweI	GCATC	2 cut(s)	883, 1111
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	1 cut(s)	713
MaeIII	GTNAC	3 cut(s)	33, 668, 709
MalI	GATC	7 cut(s)	12, 18, 482, 522, 587, 785, 941
MboI	GATC	7 cut(s)	10, 16, 480, 520, 585, 783, 939
MboII	GAAGA	6 cut(s)	227, 767, 793, 833, 943, 1009
MflI	RGATCY	1 cut(s)	585
MhlI	GDGCHC	1 cut(s)	767
MluCI	AATT	6 cut(s)	48, 248, 458, 596, 664, 825
MlyI	GAGTC	2 cut(s)	92, 574
MmeI	TCCRAC	2 cut(s)	174, 249
MseI	TTAA	5 cut(s)	125, 174, 332, 663, 1135
MspA1I	CMGCKG	2 cut(s)	119, 1034
MspR9I	CCNGG	2 cut(s)	500, 1007
Mva1269I	GAATGC	1 cut(s)	612
MvaI	CCWGG	2 cut(s)	500, 1007
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	7 cut(s)	10, 16, 480, 520, 585, 783, 939
NlaIII	CATG	1 cut(s)	32
NlaIV	GGNNCC	1 cut(s)	587
NmuCI	GTSAC	1 cut(s)	709
PctI	GAATGC	1 cut(s)	612
PfeI	GAWTC	1 cut(s)	463
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	2 cut(s)	92, 573
PpsI	GAGTC	2 cut(s)	92, 573
Psp6I	CCWGG	2 cut(s)	498, 1005
PspFI	CCCAGC	1 cut(s)	619
PspGI	CCWGG	2 cut(s)	498, 1005
PspN4I	GGNNCC	1 cut(s)	587
PspPI	GGNCC	2 cut(s)	868, 1003
PsuI	RGATCY	1 cut(s)	585
PvuII	CAGCTG	1 cut(s)	119
RsaI	GTAC	2 cut(s)	329, 532
RsaNI	GTAC	2 cut(s)	328, 531
SaqAI	TTAA	5 cut(s)	125, 174, 332, 663, 1135
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	7 cut(s)	10, 16, 480, 520, 585, 783, 939
Sau96I	GGNCC	2 cut(s)	868, 1003
SchI	GAGTC	2 cut(s)	92, 574
ScrFI	CCNGG	2 cut(s)	500, 1007
SduI	GDGCHC	1 cut(s)	767
SfaNI	GCATC	2 cut(s)	883, 1111
SfcI	CTRYAG	1 cut(s)	60
SinI	GGWCC	1 cut(s)	868
SmlI	CTYRAG	3 cut(s)	959, 983, 1061
SmoI	CTYRAG	3 cut(s)	959, 983, 1061
Sse9I	AATT	6 cut(s)	48, 248, 458, 596, 664, 825
SsiI	CCGC	2 cut(s)	990, 1032
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	2 cut(s)	498, 1005
StyI	CCWWGG	3 cut(s)	424, 589, 626
TaaI	ACNGT	4 cut(s)	267, 478, 535, 1102
TaiI	ACGT	1 cut(s)	716
TaqI	TCGA	3 cut(s)	39, 222, 432
TasI	AATT	6 cut(s)	48, 248, 458, 596, 664, 825
TatI	WGTACW	1 cut(s)	530
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	5 cut(s)	125, 174, 332, 663, 1135
Tru9I	TTAA	5 cut(s)	125, 174, 332, 663, 1135
TscAI	CASTG	2 cut(s)	481, 772
TseFI	GTSAC	1 cut(s)	709
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	709
TspDTI	ATGAA	5 cut(s)	159, 168, 195, 309, 1031
TspGWI	ACGGA	1 cut(s)	315
TspRI	CASTG	2 cut(s)	481, 772
VpaK11BI	GGWCC	1 cut(s)	868
XapI	RAATTY	1 cut(s)	596
XmiI	GTMKAC	1 cut(s)	537
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.