Rh5DG169200
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003307
Physical Location & Seq
Forward (+)
18140118 .. 18142690
2573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG169200.1

Sequence Viewer

Length: 885 bp
ATGAAATTGTTTTCGGTTAGAGTTCTGTTAGTCACATTTCCCGCCAATTCTTTCTTTCTTTCTTTCTTGTTCTCTGTTCTCCCTCATTGCGTTTCCGCTCTGCACTCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTCTTGCCTCATCGAAATGGACGATGATCAAGATTGTCTTTGCCATGTGTTACTCAAAGCTGAAATTGCCATTTCTATAGGGCTTCTAGATGAGATTGCAATACGGTTGAGAGACTCTGATGAGCAAGTGGCAGCTGTTTTAACAGATGATGGTTTTGATGAACAATATGAACATCATTTGGAACTTTTTAAGGATGAACTAGAGATGTTGGAAGATGAAATAGAGTTAGAAGAACTCGAAAAAATGGTGGAACTTGAACAAGAATTGAAAGAACTTGAACTGTTGGAGGTTGCAGGAGAAATGGAACAACTTGAAATGTTGGCTATTGAAGGTTCATATCCGTACTTAAACAATGGTGTGAACCCTGAGGCATTTGCTTATGATAAGGCTGGTGATGGAAACAAAGAGGAGTTAGCTGATGAGGACCAGAAGGTGAAGGAGAGGATTGATGCCCATAATAGCCTGAAAACTTTTATCTACAACTTGAAGAACCAGATCAACGAAATGGACAAGCTTGAGTATGATGAGAAGGATAAGCTTGAGACCGCTGTGAAGAAGGCCCTGGAATGGATGAAGGACAACCAGACCGCTGAGAAGGAGGACTATGAGGAGAAGCTCAAGGAGGTTGAAGCAATCTGCAACGCTATCATCACAACTGTTTACCAGAGGTCAGGCCGAGCAGGCAAGTACTACAACATTCAGAGAAGTAACCTTGAATTTCATTCCAAGAAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020
Pfam Domains
Protein Families
HSP70

Protein Analysis

294

Amino Acids

33.78

Weight (kDa)

4.45

Isoelectric Point (pI)

35.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 183 - 271 2.6e-07 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 98
AciI CCGC 4 cut(s) 42, 96, 693, 735
AcsI RAATTY 1 cut(s) 863
AfaI GTAC 2 cut(s) 491, 836
AfiI CCNNNNNNNGG 1 cut(s) 714
AgsI TTSAA 8 cut(s) 404, 415, 425, 461, 476, 634, 776, 863
AjnI CCWGG 1 cut(s) 708
AluBI AGCT 6 cut(s) 206, 281, 563, 661, 685, 763
AluI AGCT 6 cut(s) 206, 281, 563, 661, 685, 763
Alw26I GTCTC 2 cut(s) 252, 683
AoxI GGCC 2 cut(s) 705, 820
ApeKI GCWGC 1 cut(s) 278
ApoI RAATTY 1 cut(s) 863
AspS9I GGNCC 2 cut(s) 571, 706
AsuHPI GGTGA 2 cut(s) 551, 592
AvaII GGWCC 1 cut(s) 571
AxyI CCTNAGG 1 cut(s) 513
BbvI GCAGC 1 cut(s) 290
BccI CCATC 2 cut(s) 290, 536
BciT130I CCWGG 1 cut(s) 710
BclI TGATCA 1 cut(s) 172
BcoDI GTCTC 2 cut(s) 252, 683
BfaI CTAG 2 cut(s) 233, 347
BfmI CTRYAG 1 cut(s) 222
BglI GCCNNNNNGGC 1 cut(s) 828
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
BmcAI AGTACT 1 cut(s) 836
Bme1390I CCNGG 1 cut(s) 710
Bme18I GGWCC 1 cut(s) 571
BmgT120I GGNCC 2 cut(s) 571, 706
BmrFI CCNGG 1 cut(s) 710
BmsI GCATC 1 cut(s) 586
BpuEI CTTGAG 3 cut(s) 683, 707, 749
BsaI GGTCTC 1 cut(s) 683
BsaJI CCNNGG 1 cut(s) 708
Bsc4I CCNNNNNNNGG 1 cut(s) 714
Bse21I CCTNAGG 1 cut(s) 513
Bse3DI GCAATG 1 cut(s) 85
BseBI CCWGG 1 cut(s) 710
BseDI CCNNGG 1 cut(s) 708
BseGI GGATG 2 cut(s) 346, 723
BseLI CCNNNNNNNGG 1 cut(s) 714
BseMI GCAATG 1 cut(s) 85
BseMII CTCAG 2 cut(s) 504, 729
BseRI GAGGAG 2 cut(s) 569, 770
BseXI GCAGC 1 cut(s) 290
BsgI GTGCAG 1 cut(s) 86
BshFI GGCC 2 cut(s) 707, 822
BslI CCNNNNNNNGG 1 cut(s) 714
BsmAI GTCTC 2 cut(s) 252, 683
BsnI GGCC 2 cut(s) 707, 822
Bso31I GGTCTC 1 cut(s) 683
Bsp143I GATC 2 cut(s) 172, 642
BspACI CCGC 4 cut(s) 42, 96, 693, 735
BspANI GGCC 2 cut(s) 707, 822
BspCNI CTCAG 2 cut(s) 505, 730
BspTNI GGTCTC 1 cut(s) 683
BsrBI CCGCTC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 85
BssECI CCNNGG 1 cut(s) 708
BssMI GATC 2 cut(s) 172, 642
Bst2UI CCWGG 1 cut(s) 710
Bst4CI ACNGT 3 cut(s) 252, 429, 805
BstC8I GCNNGC 1 cut(s) 829
BstDEI CTNAG 2 cut(s) 513, 738
BstF5I GGATG 2 cut(s) 346, 723
BstKTI GATC 2 cut(s) 175, 645
BstMAI GTCTC 2 cut(s) 252, 683
BstMBI GATC 2 cut(s) 172, 642
BstMWI GCNNNNNNNGC 2 cut(s) 212, 828
BstNI CCWGG 1 cut(s) 710
BstSCI CCNGG 1 cut(s) 708
BstSFI CTRYAG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 290
Bsu36I CCTNAGG 1 cut(s) 513
BsuRI GGCC 2 cut(s) 707, 822
BtsCI GGATG 2 cut(s) 346, 723
Cac8I GCNNGC 1 cut(s) 829
Cfr13I GGNCC 2 cut(s) 571, 706
Csp6I GTAC 2 cut(s) 490, 835
CviAII CATG 1 cut(s) 191
CviQI GTAC 2 cut(s) 490, 835
DdeI CTNAG 2 cut(s) 513, 738
DpnI GATC 2 cut(s) 174, 644
DpnII GATC 2 cut(s) 172, 642
Eco31I GGTCTC 1 cut(s) 683
Eco47I GGWCC 1 cut(s) 571
Eco81I CCTNAGG 1 cut(s) 513
EcoO109I RGGNCCY 1 cut(s) 706
EcoRII CCWGG 1 cut(s) 708
FaeI CATG 1 cut(s) 194
FaiI YATR 8 cut(s) 192, 224, 315, 484, 528, 603, 669, 753
FalI AAGNNNNNCTT 2 cut(s) 168, 200
FatI CATG 1 cut(s) 190
FauI CCCGC 1 cut(s) 49
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 279
FokI GGATG 2 cut(s) 353, 730
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 2 cut(s) 233, 347
GluI GCNGC 1 cut(s) 279
HaeIII GGCC 2 cut(s) 707, 822
Hin1II CATG 1 cut(s) 194
HindIII AAGCTT 2 cut(s) 659, 683
HinfI GANTC 1 cut(s) 260
HphI GGTGA 2 cut(s) 551, 592
Hpy166II GTNNAC 2 cut(s) 508, 808
Hpy188I TCNGA 2 cut(s) 265, 849
Hpy188III TCNNGA 2 cut(s) 176, 233
Hpy8I GTNNAC 2 cut(s) 508, 808
HpyAV CCTTC 7 cut(s) 470, 571, 577, 670, 697, 715, 736
HpyCH4III ACNGT 3 cut(s) 252, 429, 805
HpyCH4V TGCA 4 cut(s) 103, 245, 440, 786
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 828
HpyF3I CTNAG 2 cut(s) 513, 738
Hsp92II CATG 1 cut(s) 194
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 2 cut(s) 172, 642
Lsp1109I GCAGC 1 cut(s) 290
LweI GCATC 1 cut(s) 586
MaeI CTAG 2 cut(s) 233, 347
MaeIII GTNAC 3 cut(s) 31, 195, 854
MalI GATC 2 cut(s) 174, 644
MbiI CCGCTC 1 cut(s) 98
MboI GATC 2 cut(s) 172, 642
MboII GAAGA 4 cut(s) 371, 389, 646, 712
MluCI AATT 5 cut(s) 5, 46, 210, 410, 863
MlyI GAGTC 1 cut(s) 254
MmeI TCCRAC 2 cut(s) 336, 411
MseI TTAA 3 cut(s) 287, 336, 494
MslI CAYNNNNRTG 1 cut(s) 161
MspA1I CMGCKG 3 cut(s) 281, 695, 737
MspR9I CCNGG 1 cut(s) 710
MvaI CCWGG 1 cut(s) 710
MwoI GCNNNNNNNGC 2 cut(s) 212, 828
NdeII GATC 2 cut(s) 172, 642
NlaIII CATG 1 cut(s) 194
NmeAIII GCCGAG 1 cut(s) 848
NmuCI GTSAC 1 cut(s) 31
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PkrI GCNGC 1 cut(s) 280
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
Psp6I CCWGG 1 cut(s) 708
PspGI CCWGG 1 cut(s) 708
PspPI GGNCC 2 cut(s) 571, 706
PvuII CAGCTG 1 cut(s) 281
RsaI GTAC 2 cut(s) 491, 836
RsaNI GTAC 2 cut(s) 490, 835
RseI CAYNNNNRTG 1 cut(s) 161
SaqAI TTAA 3 cut(s) 287, 336, 494
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 2 cut(s) 172, 642
Sau96I GGNCC 2 cut(s) 571, 706
ScaI AGTACT 1 cut(s) 836
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 1 cut(s) 710
SfaNI GCATC 1 cut(s) 586
SfcI CTRYAG 1 cut(s) 222
SinI GGWCC 1 cut(s) 571
SmiMI CAYNNNNRTG 1 cut(s) 161
SmlI CTYRAG 3 cut(s) 662, 686, 764
SmoI CTYRAG 3 cut(s) 662, 686, 764
Sse9I AATT 5 cut(s) 5, 46, 210, 410, 863
SsiI CCGC 4 cut(s) 42, 96, 693, 735
SspMI CTAG 2 cut(s) 233, 347
StyD4I CCNGG 1 cut(s) 708
TaaI ACNGT 3 cut(s) 252, 429, 805
TaqI TCGA 2 cut(s) 159, 384
TasI AATT 5 cut(s) 5, 46, 210, 410, 863
TatI WGTACW 1 cut(s) 834
Tru1I TTAA 3 cut(s) 287, 336, 494
Tru9I TTAA 3 cut(s) 287, 336, 494
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 8 cut(s) 17, 321, 330, 357, 378, 471, 734, 857
TspGWI ACGGA 1 cut(s) 477
VpaK11BI GGWCC 1 cut(s) 571
XapI RAATTY 1 cut(s) 863
XbaI TCTAGA 1 cut(s) 232
XspI CTAG 2 cut(s) 233, 347
ZrmI AGTACT 1 cut(s) 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.