Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003307

Physical Location & Seq

Genomic Coordinates Reverse (-)

6041222 .. 6044571

Gene Structure 3350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG083700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCTGGCTCCTGGAGAGCGCGCAATTCTCTTATCGTCTTCGCGATCGTCACATTAGATATTCTTCTCTTGGATGTTGCACCTCTTACCCTTGGTATTGAGACTGTTGGTGGAGTGATGACCAAGTTGATCCCCAGAAACACTGTGATCCCAACCAAGAAGTCCCAAGTTTTCACCACTTACCAGGATCAGCAGACTACTGTCTCCATTCAGGTCTTTGAGGGTGAAAGGAGTCTCACAAAGGATTGTAGAAACCTTGGAAAGTTCGACCTTACTGGAATTCCTCCAGCTCCAAGGGGTACTCCTCAGATCGAAGTCACATTCGAAGTGGATGCCAACGGTATCCTGAATGTCAAGGCAGAAGACAAGGGCACTGGTAAATCTGAGAAGATCACCATCACCAACGACAAGGGTCGTCTGAGCCAGGAGGAGATTGAGCGCATGGTTAAGGAGGCCGAAGAGTTCGCTGAGGAAGACAAGAAGGTTAAGGAGAGAATTGACGCCCGCAACAGCCTTGAAACCTACACTTACAACATGAAGAACCAAGTCAACGACAAGGACAAGCTTGCTGACAAGCTCGAGTCTGATGAGAAGGAGAAGATTGAGACCGCAGTGAAGGAAGCCCTTGAATGGCTGGACGACAACCAGACCGCTGAGAAGGAAGACTATGAGGAGAAGCTCAAGGAGGTCGAAGCCGTTTGCAACCCCATCATCACAGCTGTCTACCAGAGGTCAGGTGGTGCCCCAGGCGGTGAATCAGCATCCGAGGATGATGATTCTCACGATGAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0012505 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

264

Amino Acids

29.44

Weight (kDa)

4.64

Isoelectric Point (pI)

29.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	19 - 243	1.5e-75	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28540 AT5G42020 AT5G42020 AT5G42020
fragaria_vesca	FvH4_3g14480 FvH4_5g11500 FvH4_5g11500
malus_domestica	MD06G1113000.v1.1 MD14G1134100.v1.1
prunus_persica	Prupe.5G125900_v2.0.a1 Prupe.5G125900_v2.0.a1 Prupe.5G125900_v2.0.a1
pyrus_communis	pycom06g10560 pycom06g10570
rosa_chinensis	RchiOBHm_Chr5g0023851 RchiOBHm_Chr7g0186301
rosa_laevigata	RLG00000004851 RLG00000032740
rosa_multiflora	Rmu_co8308791.1_g000001 Rmu_sc0001372.1_g000006 Rmu_sc0018092.1_g000001 Rmu_ssc0000027.1_g000008
rosa_roxburghii	Rroxscaffold_1G00055390 Rroxscaffold_3G00268240
rosa_rugosa	Rorug05G0079800 Rorug06G0473100
rosa_samantha	Rh5AG169800 Rh5BG167100 Rh5CG182700 Rh5DG169200 Rh7AG067900 Rh7BG083700 Rh7CG080100 Rh7DG080700
rosa_wichuraiana	Rw5G015350 Rw7G006710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	740
AccI	GTMKAC	1 cut(s)	723
AccII	CGCG	2 cut(s)	22, 44
AciI	CCGC	4 cut(s)	505, 609, 651, 750
AclWI	GGATC	3 cut(s)	124, 142, 195
AcsI	RAATTY	1 cut(s)	279
AcyI	GRCGYC	1 cut(s)	501
AfaI	GTAC	1 cut(s)	301
AfiI	CCNNNNNNNGG	1 cut(s)	630
AgsI	TTSAA	2 cut(s)	518, 629
AjnI	CCWGG	4 cut(s)	11, 183, 423, 745
AluBI	AGCT	6 cut(s)	290, 565, 577, 679, 719, 790
AluI	AGCT	6 cut(s)	290, 565, 577, 679, 719, 790
Alw21I	GWGCWC	1 cut(s)	792
Alw26I	GTCTC	4 cut(s)	95, 208, 239, 599
AlwI	GGATC	3 cut(s)	124, 142, 195
Ama87I	CYCGRG	1 cut(s)	578
AoxI	GGCC	1 cut(s)	453
ApoI	RAATTY	1 cut(s)	279
AspLEI	GCGC	3 cut(s)	22, 24, 441
AsuHPI	GGTGA	5 cut(s)	166, 236, 385, 391, 764
AsuII	TTCGAA	1 cut(s)	324
AvaI	CYCGRG	1 cut(s)	578
BaeGI	GKGCMC	2 cut(s)	374, 745
BanI	GGYRCC	1 cut(s)	740
BanII	GRGCYC	1 cut(s)	792
BbsI	GAAGAC	4 cut(s)	31, 369, 480, 669
Bbv12I	GWGCWC	1 cut(s)	792
BbvCI	CCTCAGC	1 cut(s)	468
BccI	CCATC	2 cut(s)	404, 716
BceAI	ACGGC	1 cut(s)	680
BcgI	CGANNNNNNTGC	2 cut(s)	314, 348
BciT130I	CCWGG	4 cut(s)	13, 185, 425, 747
BciVI	GTATCC	1 cut(s)	353
BcoDI	GTCTC	4 cut(s)	95, 208, 239, 599
BfuI	GTATCC	1 cut(s)	353
Bme1390I	CCNGG	4 cut(s)	13, 185, 425, 747
BmeT110I	CYCGRG	1 cut(s)	578
BmiI	GGNNCC	2 cut(s)	10, 742
BmrFI	CCNGG	4 cut(s)	13, 185, 425, 747
BmsI	GCATC	2 cut(s)	322, 770
BoxI	GACNNNNGTC	2 cut(s)	200, 411
BpiI	GAAGAC	4 cut(s)	31, 369, 480, 669
BpmI	CTGGAG	2 cut(s)	34, 270
Bpu10I	CCTNAGC	1 cut(s)	468
Bpu14I	TTCGAA	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	665
BsaBI	GATNNNNATC	1 cut(s)	395
BsaHI	GRCGYC	1 cut(s)	501
BsaI	GGTCTC	1 cut(s)	599
BsaJI	CCNNGG	5 cut(s)	91, 256, 293, 745, 765
Bsc4I	CCNNNNNNNGG	1 cut(s)	630
Bse1I	ACTGG	2 cut(s)	280, 379
Bse8I	GATNNNNATC	1 cut(s)	395
BseBI	CCWGG	4 cut(s)	13, 185, 425, 747
BseDI	CCNNGG	5 cut(s)	91, 256, 293, 745, 765
BseGI	GGATG	4 cut(s)	79, 337, 761, 775
BseJI	GATNNNNATC	1 cut(s)	395
BseLI	CCNNNNNNNGG	1 cut(s)	630
BseMII	CTCAG	5 cut(s)	320, 375, 410, 459, 645
BseNI	ACTGG	2 cut(s)	280, 379
BsePI	GCGCGC	1 cut(s)	20
BseRI	GAGGAG	3 cut(s)	294, 443, 686
BseSI	GKGCMC	2 cut(s)	374, 745
Bsh1236I	CGCG	2 cut(s)	22, 44
Bsh1285I	CGRYCG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	455
BshNI	GGYRCC	1 cut(s)	740
BsiEI	CGRYCG	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	792
BsiHKCI	CYCGRG	1 cut(s)	578
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	630
BsmAI	GTCTC	4 cut(s)	95, 208, 239, 599
BsmFI	GGGAC	1 cut(s)	148
BsnI	GGCC	1 cut(s)	455
Bso31I	GGTCTC	1 cut(s)	599
BsoBI	CYCGRG	1 cut(s)	578
Bsp119I	TTCGAA	1 cut(s)	324
Bsp1286I	GDGCHC	3 cut(s)	374, 745, 792
Bsp143I	GATC	6 cut(s)	45, 129, 147, 187, 309, 390
Bsp68I	TCGCGA	1 cut(s)	44
BspACI	CCGC	4 cut(s)	505, 609, 651, 750
BspANI	GGCC	1 cut(s)	455
BspCNI	CTCAG	5 cut(s)	319, 376, 411, 460, 646
BspFNI	CGCG	2 cut(s)	22, 44
BspLI	GGNNCC	2 cut(s)	10, 742
BspPI	GGATC	3 cut(s)	124, 142, 195
BspT104I	TTCGAA	1 cut(s)	324
BspT107I	GGYRCC	1 cut(s)	740
BspTNI	GGTCTC	1 cut(s)	599
BsrI	ACTGG	2 cut(s)	280, 379
BssECI	CCNNGG	5 cut(s)	91, 256, 293, 745, 765
BssHII	GCGCGC	1 cut(s)	20
BssMI	GATC	6 cut(s)	45, 129, 147, 187, 309, 390
BssNI	GRCGYC	1 cut(s)	501
BssT1I	CCWWGG	3 cut(s)	91, 256, 293
Bst2UI	CCWGG	4 cut(s)	13, 185, 425, 747
Bst4CI	ACNGT	4 cut(s)	106, 145, 202, 341
Bst6I	CTCTTC	1 cut(s)	453
BstACI	GRCGYC	1 cut(s)	501
BstBI	TTCGAA	1 cut(s)	324
BstC8I	GCNNGC	4 cut(s)	7, 22, 505, 567
BstDEI	CTNAG	5 cut(s)	306, 384, 419, 468, 654
BstF5I	GGATG	4 cut(s)	79, 337, 761, 775
BstFNI	CGCG	2 cut(s)	22, 44
BstHHI	GCGC	3 cut(s)	22, 24, 441
BstKTI	GATC	6 cut(s)	48, 132, 150, 190, 312, 393
BstMAI	GTCTC	4 cut(s)	95, 208, 239, 599
BstMBI	GATC	6 cut(s)	45, 129, 147, 187, 309, 390
BstMCI	CGRYCG	1 cut(s)	48
BstNI	CCWGG	4 cut(s)	13, 185, 425, 747
BstPAI	GACNNNNGTC	2 cut(s)	200, 411
BstSCI	CCNGG	4 cut(s)	11, 183, 423, 745
BstSLI	GKGCMC	2 cut(s)	374, 745
BstUI	CGCG	2 cut(s)	22, 44
BstV2I	GAAGAC	4 cut(s)	31, 369, 480, 669
BsuI	GTATCC	1 cut(s)	353
BsuRI	GGCC	1 cut(s)	455
BtsCI	GGATG	4 cut(s)	79, 337, 761, 775
BtsI	GCAGTG	1 cut(s)	618
BtsIMutI	CAGTG	3 cut(s)	141, 372, 618
BtuMI	TCGCGA	1 cut(s)	44
Cac8I	GCNNGC	4 cut(s)	7, 22, 505, 567
CfoI	GCGC	3 cut(s)	22, 24, 441
CseI	GACGC	1 cut(s)	509
Csp6I	GTAC	1 cut(s)	300
CviAII	CATG	2 cut(s)	442, 535
CviQI	GTAC	1 cut(s)	300
DdeI	CTNAG	5 cut(s)	306, 384, 419, 468, 654
DpnI	GATC	6 cut(s)	47, 131, 149, 189, 311, 392
DpnII	GATC	6 cut(s)	45, 129, 147, 187, 309, 390
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
Ecl136II	GAGCTC	1 cut(s)	790
Eco130I	CCWWGG	3 cut(s)	91, 256, 293
Eco24I	GRGCYC	1 cut(s)	792
Eco31I	GGTCTC	1 cut(s)	599
Eco53kI	GAGCTC	1 cut(s)	790
Eco88I	CYCGRG	1 cut(s)	578
EcoICRI	GAGCTC	1 cut(s)	790
EcoRI	GAATTC	1 cut(s)	279
EcoRII	CCWGG	4 cut(s)	11, 183, 423, 745
EcoT14I	CCWWGG	3 cut(s)	91, 256, 293
EcoT38I	GRGCYC	1 cut(s)	792
ErhI	CCWWGG	3 cut(s)	91, 256, 293
FaeI	CATG	2 cut(s)	445, 538
FaiI	YATR	3 cut(s)	443, 536, 669
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	2 cut(s)	441, 534
FauI	CCCGC	1 cut(s)	512
FblI	GTMKAC	1 cut(s)	723
FokI	GGATG	4 cut(s)	86, 344, 748, 782
FriOI	GRGCYC	1 cut(s)	792
GlaI	GCGC	3 cut(s)	21, 23, 440
GsuI	CTGGAG	2 cut(s)	34, 270
HaeIII	GGCC	1 cut(s)	455
HgaI	GACGC	1 cut(s)	509
HhaI	GCGC	3 cut(s)	22, 24, 441
Hin1I	GRCGYC	1 cut(s)	501
Hin1II	CATG	2 cut(s)	445, 538
Hin6I	GCGC	3 cut(s)	20, 22, 439
HinP1I	GCGC	3 cut(s)	20, 22, 439
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	4 cut(s)	232, 581, 755, 776
HphI	GGTGA	5 cut(s)	166, 236, 385, 391, 764
Hpy166II	GTNNAC	2 cut(s)	550, 724
Hpy188I	TCNGA	5 cut(s)	309, 385, 420, 586, 766
Hpy188III	TCNNGA	3 cut(s)	43, 346, 782
Hpy8I	GTNNAC	2 cut(s)	550, 724
HpyAV	CCTTC	4 cut(s)	475, 586, 610, 652
HpyCH4III	ACNGT	4 cut(s)	106, 145, 202, 341
HpyCH4V	TGCA	2 cut(s)	80, 702
HpyF3I	CTNAG	5 cut(s)	306, 384, 419, 468, 654
Hsp92I	GRCGYC	1 cut(s)	501
Hsp92II	CATG	2 cut(s)	445, 538
HspAI	GCGC	3 cut(s)	20, 22, 439
Kzo9I	GATC	6 cut(s)	45, 129, 147, 187, 309, 390
LmnI	GCTCC	2 cut(s)	14, 295
LweI	GCATC	2 cut(s)	322, 770
MaeIII	GTNAC	2 cut(s)	49, 316
MalI	GATC	6 cut(s)	47, 131, 149, 189, 311, 392
MboI	GATC	6 cut(s)	45, 129, 147, 187, 309, 390
MboII	GAAGA	9 cut(s)	31, 56, 374, 400, 470, 485, 550, 610, 674
MhlI	GDGCHC	3 cut(s)	374, 745, 792
MluCI	AATT	3 cut(s)	25, 279, 495
MlyI	GAGTC	2 cut(s)	241, 590
MseI	TTAA	2 cut(s)	447, 486
MspA1I	CMGCKG	2 cut(s)	653, 719
MspR9I	CCNGG	4 cut(s)	13, 185, 425, 747
MvaI	CCWGG	4 cut(s)	13, 185, 425, 747
MvnI	CGCG	2 cut(s)	22, 44
NdeII	GATC	6 cut(s)	45, 129, 147, 187, 309, 390
NlaIII	CATG	2 cut(s)	445, 538
NlaIV	GGNNCC	2 cut(s)	10, 742
NmuCI	GTSAC	2 cut(s)	49, 316
NruI	TCGCGA	1 cut(s)	44
NspV	TTCGAA	1 cut(s)	324
PaeR7I	CTCGAG	1 cut(s)	578
PauI	GCGCGC	1 cut(s)	20
PfeI	GAWTC	2 cut(s)	755, 776
PfoI	TCCNGGA	1 cut(s)	11
Ple19I	CGATCG	1 cut(s)	48
PleI	GAGTC	2 cut(s)	240, 589
PpsI	GAGTC	2 cut(s)	240, 589
PshAI	GACNNNNGTC	2 cut(s)	200, 411
Psp124BI	GAGCTC	1 cut(s)	792
Psp6I	CCWGG	4 cut(s)	11, 183, 423, 745
PspGI	CCWGG	4 cut(s)	11, 183, 423, 745
PspN4I	GGNNCC	2 cut(s)	10, 742
PspXI	VCTCGAGB	1 cut(s)	578
PteI	GCGCGC	1 cut(s)	20
PvuI	CGATCG	1 cut(s)	48
PvuII	CAGCTG	1 cut(s)	719
RruI	TCGCGA	1 cut(s)	44
RsaI	GTAC	1 cut(s)	301
RsaNI	GTAC	1 cut(s)	300
SacI	GAGCTC	1 cut(s)	792
SaqAI	TTAA	2 cut(s)	447, 486
Sau3AI	GATC	6 cut(s)	45, 129, 147, 187, 309, 390
SchI	GAGTC	2 cut(s)	241, 590
ScrFI	CCNGG	4 cut(s)	13, 185, 425, 747
SduI	GDGCHC	3 cut(s)	374, 745, 792
SfaNI	GCATC	2 cut(s)	322, 770
Sfr274I	CTCGAG	1 cut(s)	578
SfuI	TTCGAA	1 cut(s)	324
SlaI	CTCGAG	1 cut(s)	578
SmlI	CTYRAG	2 cut(s)	578, 680
SmoI	CTYRAG	2 cut(s)	578, 680
Sse9I	AATT	3 cut(s)	25, 279, 495
SsiI	CCGC	4 cut(s)	505, 609, 651, 750
SstI	GAGCTC	1 cut(s)	792
StyD4I	CCNGG	4 cut(s)	11, 183, 423, 745
StyI	CCWWGG	3 cut(s)	91, 256, 293
TaaI	ACNGT	4 cut(s)	106, 145, 202, 341
TaqI	TCGA	5 cut(s)	267, 312, 324, 579, 690
TasI	AATT	3 cut(s)	25, 279, 495
TfiI	GAWTC	2 cut(s)	755, 776
Tru1I	TTAA	2 cut(s)	447, 486
Tru9I	TTAA	2 cut(s)	447, 486
TscAI	CASTG	3 cut(s)	148, 379, 618
TseFI	GTSAC	2 cut(s)	49, 316
Tsp45I	GTSAC	2 cut(s)	49, 316
TspDTI	ATGAA	1 cut(s)	551
TspRI	CASTG	3 cut(s)	148, 379, 618
XapI	RAATTY	1 cut(s)	279
XcmI	CCANNNNNNNNNTGG	1 cut(s)	734
XhoI	CTCGAG	1 cut(s)	578
XmiI	GTMKAC	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.