Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003307

Physical Location & Seq

Genomic Coordinates Forward (+)

18092034 .. 18094132

Gene Structure 2099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30365

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGAAATTGTTTTCGGTTAGAGTTCTGTTAGTCACATTTCCCGCCAATTCTTTCTTTCTTTCTTTCTTGTTCTCTGTTCTCCCTCATTGCCTTCTAGATGAGATTGCAATACGGTTGAGAGACTCTGATGAGCAAGTGGCAGCTGTTTTAACAGATGATGGTTTTGATGAACAATATGAACATCATTTGGAACTTTTTAAGGATGAACTAGAGATGTTGGAAGATGAAATAGAGTTAGAAGAACTCGAAAAAATGGTGGAACTTGAACAAGAATTGAAAGAACTTGAACTGTTGGAGGTTGCAGGAGAAATGGAACAACTTGAAATGTTGGCTATTGAAGGTTCATATCCGTACTTAAACAATGGTGTGAACCCTGAGGCATTTGCTTATGATAAGGCTGGTGATGGAAACAAAGATATCATTCTCTGGGATGTTGCACCTCTCACCCTTGGTATCGAAACTGCTGGTGGTATTATGACTAAATTGATTCCCAGAAACACTGTGATCCCAACCAAGAAATCCCAGGTTTTCACCACTTATCAGGATCAGCAGAGTACAGTCTACATTCAGGTCTATGAGGGTGAAGGGAGTCTAACAAGATATTGCAGGATCCTTGGAAAATTTGAACTTACTGGCATTCCCCCAGCCCCAAGGGGTATTCCTCGGATTGAAGTCACGTTTGAAGTGGATACCAATGGTTTCCTGAATGTCAAGGCAGAAGACAAGGGCACTGGCAAATCTGAGAAGATCACCATCACCAATGACAAGGGTTGCACAAGCCAAGAAGAAATTGAGTGCATAGTCAAAGAGGCAGAGGAGTTAGCTGATGAGGACCAGAAGGTGAAGGAGAGGATTGATGCCCATAATAGCCTGAAAACTTTTATCTACAACTTGAAGAACCAGATCAACGAAATGGACAAGCTTGAGTATGATGAGAAGGATAAGCTTGAGACCGCTGTGAAGAAGGCCCTGGAATGGATGAAGGACAACCAGACCGCTGAGAAGGAGGACTATGAGGAGAAGCTCAAGGAGGTTGAAGCAATCTGCAACGCTATCATCACAACTGTTTACCAGAGGTCAGGTGATACTCCTGTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0012505 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

366

Amino Acids

41.71

Weight (kDa)

4.43

Isoelectric Point (pI)

31.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	136 - 358	2.9e-66	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28540 AT5G42020 AT5G42020 AT5G42020
fragaria_vesca	FvH4_3g14480 FvH4_5g11500 FvH4_5g11500
malus_domestica	MD06G1113000.v1.1 MD14G1134100.v1.1
prunus_persica	Prupe.5G125900_v2.0.a1 Prupe.5G125900_v2.0.a1 Prupe.5G125900_v2.0.a1
pyrus_communis	pycom06g10560 pycom06g10570
rosa_chinensis	RchiOBHm_Chr5g0023851 RchiOBHm_Chr7g0186301
rosa_laevigata	RLG00000004851 RLG00000032740
rosa_multiflora	Rmu_co8308791.1_g000001 Rmu_sc0001372.1_g000006 Rmu_sc0018092.1_g000001 Rmu_ssc0000027.1_g000008
rosa_roxburghii	Rroxscaffold_1G00055390 Rroxscaffold_3G00268240
rosa_rugosa	Rorug05G0079800 Rorug06G0473100
rosa_samantha	Rh5AG169800 Rh5BG167100 Rh5CG182700 Rh5DG169200 Rh7AG067900 Rh7BG083700 Rh7CG080100 Rh7DG080700
rosa_wichuraiana	Rw5G015350 Rw7G006710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	561
AciI	CCGC	3 cut(s)	42, 954, 996
AclWI	GGATC	4 cut(s)	499, 552, 604, 617
AcsI	RAATTY	1 cut(s)	620
AfaI	GTAC	2 cut(s)	353, 556
AfiI	CCNNNNNNNGG	1 cut(s)	975
AjnI	CCWGG	2 cut(s)	522, 969
AluBI	AGCT	5 cut(s)	143, 824, 922, 946, 1024
AluI	AGCT	5 cut(s)	143, 824, 922, 946, 1024
Alw26I	GTCTC	2 cut(s)	114, 944
AlwI	GGATC	4 cut(s)	499, 552, 604, 617
AoxI	GGCC	1 cut(s)	966
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	620
AspS9I	GGNCC	2 cut(s)	832, 967
AsuHPI	GGTGA	8 cut(s)	413, 436, 523, 593, 742, 748, 853, 1094
AvaII	GGWCC	1 cut(s)	832
AxyI	CCTNAGG	1 cut(s)	375
BaeGI	GKGCMC	1 cut(s)	731
BaeI	ACNNNNGTAYC	1 cut(s)	1077
BamHI	GGATCC	1 cut(s)	609
BbsI	GAAGAC	1 cut(s)	726
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	3 cut(s)	152, 398, 761
BciT130I	CCWGG	2 cut(s)	524, 971
BciVI	GTATCC	1 cut(s)	682
BcoDI	GTCTC	2 cut(s)	114, 944
BfaI	CTAG	2 cut(s)	95, 209
BfuI	GTATCC	1 cut(s)	682
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme1390I	CCNGG	2 cut(s)	524, 971
Bme18I	GGWCC	1 cut(s)	832
BmgT120I	GGNCC	2 cut(s)	832, 967
BmiI	GGNNCC	1 cut(s)	611
BmrFI	CCNGG	2 cut(s)	524, 971
BmsI	GCATC	1 cut(s)	847
BpiI	GAAGAC	1 cut(s)	726
BpuEI	CTTGAG	3 cut(s)	944, 968, 1010
BsaBI	GATNNNNATC	1 cut(s)	752
BsaI	GGTCTC	1 cut(s)	944
BsaJI	CCNNGG	6 cut(s)	448, 522, 613, 650, 662, 969
Bsc4I	CCNNNNNNNGG	1 cut(s)	975
Bse1I	ACTGG	2 cut(s)	637, 736
Bse21I	CCTNAGG	1 cut(s)	375
Bse3DI	GCAATG	1 cut(s)	85
Bse8I	GATNNNNATC	1 cut(s)	752
BseBI	CCWGG	2 cut(s)	524, 971
BseDI	CCNNGG	6 cut(s)	448, 522, 613, 650, 662, 969
BseGI	GGATG	3 cut(s)	208, 436, 984
BseJI	GATNNNNATC	1 cut(s)	752
BseLI	CCNNNNNNNGG	1 cut(s)	975
BseMI	GCAATG	1 cut(s)	85
BseMII	CTCAG	3 cut(s)	366, 732, 990
BseNI	ACTGG	2 cut(s)	637, 736
BseRI	GAGGAG	2 cut(s)	830, 1031
BseSI	GKGCMC	1 cut(s)	731
BseXI	GCAGC	1 cut(s)	152
BseYI	CCCAGC	1 cut(s)	643
BshFI	GGCC	1 cut(s)	968
BslI	CCNNNNNNNGG	1 cut(s)	975
BsmAI	GTCTC	2 cut(s)	114, 944
BsmI	GAATGC	1 cut(s)	636
BsnI	GGCC	1 cut(s)	968
Bso31I	GGTCTC	1 cut(s)	944
Bsp1286I	GDGCHC	1 cut(s)	731
Bsp143I	GATC	5 cut(s)	504, 544, 609, 747, 903
BspACI	CCGC	3 cut(s)	42, 954, 996
BspANI	GGCC	1 cut(s)	968
BspCNI	CTCAG	3 cut(s)	367, 733, 991
BspLI	GGNNCC	1 cut(s)	611
BspPI	GGATC	4 cut(s)	499, 552, 604, 617
BspTNI	GGTCTC	1 cut(s)	944
BsrDI	GCAATG	1 cut(s)	85
BsrI	ACTGG	2 cut(s)	637, 736
BssECI	CCNNGG	6 cut(s)	448, 522, 613, 650, 662, 969
BssMI	GATC	5 cut(s)	504, 544, 609, 747, 903
BssT1I	CCWWGG	3 cut(s)	448, 613, 650
Bst2UI	CCWGG	2 cut(s)	524, 971
Bst4CI	ACNGT	5 cut(s)	114, 291, 502, 559, 1066
BstDEI	CTNAG	3 cut(s)	375, 741, 999
BstF5I	GGATG	3 cut(s)	208, 436, 984
BstKTI	GATC	5 cut(s)	507, 547, 612, 750, 906
BstMAI	GTCTC	2 cut(s)	114, 944
BstMBI	GATC	5 cut(s)	504, 544, 609, 747, 903
BstNI	CCWGG	2 cut(s)	524, 971
BstSCI	CCNGG	2 cut(s)	522, 969
BstSLI	GKGCMC	1 cut(s)	731
BstV1I	GCAGC	1 cut(s)	152
BstV2I	GAAGAC	1 cut(s)	726
BstX2I	RGATCY	1 cut(s)	609
BstYI	RGATCY	1 cut(s)	609
Bsu36I	CCTNAGG	1 cut(s)	375
BsuI	GTATCC	1 cut(s)	682
BsuRI	GGCC	1 cut(s)	968
BtsCI	GGATG	3 cut(s)	208, 436, 984
BtsIMutI	CAGTG	2 cut(s)	498, 729
Cfr13I	GGNCC	2 cut(s)	832, 967
Csp6I	GTAC	2 cut(s)	352, 555
CviQI	GTAC	2 cut(s)	352, 555
DdeI	CTNAG	3 cut(s)	375, 741, 999
DpnI	GATC	5 cut(s)	506, 546, 611, 749, 905
DpnII	GATC	5 cut(s)	504, 544, 609, 747, 903
Eco130I	CCWWGG	3 cut(s)	448, 613, 650
Eco31I	GGTCTC	1 cut(s)	944
Eco32I	GATATC	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	832
Eco81I	CCTNAGG	1 cut(s)	375
EcoO109I	RGGNCCY	1 cut(s)	967
EcoRII	CCWGG	2 cut(s)	522, 969
EcoRV	GATATC	1 cut(s)	418
EcoT14I	CCWWGG	3 cut(s)	448, 613, 650
ErhI	CCWWGG	3 cut(s)	448, 613, 650
FaiI	YATR	9 cut(s)	177, 346, 390, 476, 576, 800, 864, 930, 1014
FauI	CCCGC	1 cut(s)	49
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	1 cut(s)	141
FokI	GGATG	3 cut(s)	215, 443, 991
Fsp4HI	GCNGC	1 cut(s)	141
FspBI	CTAG	2 cut(s)	95, 209
GluI	GCNGC	1 cut(s)	141
GsaI	CCCAGC	1 cut(s)	647
HaeIII	GGCC	1 cut(s)	968
HindIII	AAGCTT	2 cut(s)	920, 944
HinfI	GANTC	3 cut(s)	122, 487, 589
HphI	GGTGA	8 cut(s)	413, 436, 523, 593, 742, 748, 853, 1094
Hpy166II	GTNNAC	3 cut(s)	370, 562, 1069
Hpy188I	TCNGA	3 cut(s)	127, 666, 742
Hpy188III	TCNNGA	3 cut(s)	95, 542, 703
Hpy8I	GTNNAC	3 cut(s)	370, 562, 1069
HpyAV	CCTTC	9 cut(s)	101, 332, 578, 832, 838, 931, 958, 976, 997
HpyCH4III	ACNGT	5 cut(s)	114, 291, 502, 559, 1066
HpyCH4IV	ACGT	1 cut(s)	677
HpyCH4V	TGCA	7 cut(s)	107, 302, 437, 606, 774, 798, 1047
HpyF3I	CTNAG	3 cut(s)	375, 741, 999
HpySE526I	ACGT	1 cut(s)	677
Kzo9I	GATC	5 cut(s)	504, 544, 609, 747, 903
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	1 cut(s)	847
MaeI	CTAG	2 cut(s)	95, 209
MaeII	ACGT	1 cut(s)	677
MaeIII	GTNAC	2 cut(s)	31, 673
MalI	GATC	5 cut(s)	506, 546, 611, 749, 905
MboI	GATC	5 cut(s)	504, 544, 609, 747, 903
MboII	GAAGA	7 cut(s)	233, 251, 731, 757, 797, 907, 973
MflI	RGATCY	1 cut(s)	609
MhlI	GDGCHC	1 cut(s)	731
MluCI	AATT	6 cut(s)	5, 46, 272, 482, 620, 789
MlyI	GAGTC	2 cut(s)	116, 598
MmeI	TCCRAC	2 cut(s)	198, 273
MseI	TTAA	4 cut(s)	149, 198, 356, 1099
MspA1I	CMGCKG	3 cut(s)	143, 956, 998
MspR9I	CCNGG	2 cut(s)	524, 971
Mva1269I	GAATGC	1 cut(s)	636
MvaI	CCWGG	2 cut(s)	524, 971
NdeII	GATC	5 cut(s)	504, 544, 609, 747, 903
NlaIV	GGNNCC	1 cut(s)	611
NmuCI	GTSAC	2 cut(s)	31, 673
PctI	GAATGC	1 cut(s)	636
PfeI	GAWTC	1 cut(s)	487
PkrI	GCNGC	1 cut(s)	142
PleI	GAGTC	2 cut(s)	116, 597
PpsI	GAGTC	2 cut(s)	116, 597
Psp6I	CCWGG	2 cut(s)	522, 969
PspFI	CCCAGC	1 cut(s)	643
PspGI	CCWGG	2 cut(s)	522, 969
PspN4I	GGNNCC	1 cut(s)	611
PspPI	GGNCC	2 cut(s)	832, 967
PsuI	RGATCY	1 cut(s)	609
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	2 cut(s)	353, 556
RsaNI	GTAC	2 cut(s)	352, 555
SaqAI	TTAA	4 cut(s)	149, 198, 356, 1099
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	5 cut(s)	504, 544, 609, 747, 903
Sau96I	GGNCC	2 cut(s)	832, 967
SchI	GAGTC	2 cut(s)	116, 598
ScrFI	CCNGG	2 cut(s)	524, 971
SduI	GDGCHC	1 cut(s)	731
SfaNI	GCATC	1 cut(s)	847
SinI	GGWCC	1 cut(s)	832
SmlI	CTYRAG	3 cut(s)	923, 947, 1025
SmoI	CTYRAG	3 cut(s)	923, 947, 1025
Sse9I	AATT	6 cut(s)	5, 46, 272, 482, 620, 789
SsiI	CCGC	3 cut(s)	42, 954, 996
SspMI	CTAG	2 cut(s)	95, 209
StyD4I	CCNGG	2 cut(s)	522, 969
StyI	CCWWGG	3 cut(s)	448, 613, 650
TaaI	ACNGT	5 cut(s)	114, 291, 502, 559, 1066
TaiI	ACGT	1 cut(s)	680
TaqI	TCGA	2 cut(s)	246, 456
TasI	AATT	6 cut(s)	5, 46, 272, 482, 620, 789
TatI	WGTACW	1 cut(s)	554
TfiI	GAWTC	1 cut(s)	487
Tru1I	TTAA	4 cut(s)	149, 198, 356, 1099
Tru9I	TTAA	4 cut(s)	149, 198, 356, 1099
TscAI	CASTG	2 cut(s)	505, 736
TseFI	GTSAC	2 cut(s)	31, 673
TseI	GCWGC	1 cut(s)	140
Tsp45I	GTSAC	2 cut(s)	31, 673
TspDTI	ATGAA	7 cut(s)	17, 183, 192, 219, 240, 333, 995
TspGWI	ACGGA	1 cut(s)	339
TspRI	CASTG	2 cut(s)	505, 736
VpaK11BI	GGWCC	1 cut(s)	832
XapI	RAATTY	1 cut(s)	620
XbaI	TCTAGA	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	561
XspI	CTAG	2 cut(s)	95, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.