Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003307

Physical Location & Seq

Genomic Coordinates Reverse (-)

76820385 .. 76822890

Gene Structure 2506 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00055390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGACGATGATGAAGATTATATTTGCTATGAGGTACTCGAAGCTGAAATTACCATTTCTATAGGGCTTCTAGATGAGATTGCAATACGGTTGAGAGACTCTGATGAGCAAGTGGCAGCTGTTTTAACAGATGATGGTTTTGATGAACAATATGAACATCATTTGGAACTTTTTAAGGATGAACTAGAGATGTTGGAAGATGAAATAGAGTTAGAAGAACTCGCAAAAATGGTGGAACTTGAACAAGAATTGAAAGAACTTGAACTGTTGGAGGTTGCAGGAGAAATGGAACAACTTGAAATGTTGGCTATTGAAGGTTCATATCCCTACTTAAACAATGGTGTGAACCCTGAGGCATTTGCTTATGATAAGGCTGGTGATGGAAAGAAAGATATCATTCTCTGGGATGTTGCACCTCTCACCCTTGGTATCGAAACTGCTGGTGGTATTATGACTAAATTGATTCCCAGAAACACTGTGATCCCAACCAAGAAATCCCAGGTTTTCACCACTTATCAGGATCAGCAGAGTACAGTCTACATTCAGGTATCACTCTTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016592 GO:0019538 GO:0019941 GO:0030054 GO:0030163 GO:0030312 GO:0030433 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034976 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046686 GO:0050896 GO:0051603 GO:0051716 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0098588 GO:0098805 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

187

Amino Acids

21.27

Weight (kDa)

4.05

Isoelectric Point (pI)

37.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	128 - 184	6.9e-18	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28540 AT5G42020 AT5G42020 AT5G42020
fragaria_vesca	FvH4_3g14480 FvH4_5g11500 FvH4_5g11500
malus_domestica	MD06G1113000.v1.1 MD14G1134100.v1.1
prunus_persica	Prupe.5G125900_v2.0.a1 Prupe.5G125900_v2.0.a1 Prupe.5G125900_v2.0.a1
pyrus_communis	pycom06g10560 pycom06g10570
rosa_chinensis	RchiOBHm_Chr5g0023851 RchiOBHm_Chr7g0186301
rosa_laevigata	RLG00000004851 RLG00000032740
rosa_multiflora	Rmu_co8308791.1_g000001 Rmu_sc0001372.1_g000006 Rmu_sc0018092.1_g000001 Rmu_ssc0000027.1_g000008
rosa_roxburghii	Rroxscaffold_1G00055390 Rroxscaffold_3G00268240
rosa_rugosa	Rorug05G0079800 Rorug06G0473100
rosa_samantha	Rh5AG169800 Rh5BG167100 Rh5CG182700 Rh5DG169200 Rh7AG067900 Rh7BG083700 Rh7CG080100 Rh7DG080700
rosa_wichuraiana	Rw5G015350 Rw7G006710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	537
AclWI	GGATC	2 cut(s)	475, 528
AfaI	GTAC	2 cut(s)	36, 532
AgsI	TTSAA	5 cut(s)	242, 253, 263, 299, 314
AjnI	CCWGG	1 cut(s)	498
AluBI	AGCT	2 cut(s)	44, 119
AluI	AGCT	2 cut(s)	44, 119
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	2 cut(s)	475, 528
ApeKI	GCWGC	1 cut(s)	116
AsuHPI	GGTGA	3 cut(s)	389, 412, 499
AxyI	CCTNAGG	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	2 cut(s)	128, 374
BciT130I	CCWGG	1 cut(s)	500
BcoDI	GTCTC	1 cut(s)	90
BfaI	CTAG	2 cut(s)	71, 185
BfmI	CTRYAG	1 cut(s)	60
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	1 cut(s)	500
BmrFI	CCNGG	1 cut(s)	500
BsaJI	CCNNGG	2 cut(s)	424, 498
Bse21I	CCTNAGG	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	500
BseDI	CCNNGG	2 cut(s)	424, 498
BseGI	GGATG	2 cut(s)	184, 412
BseMII	CTCAG	1 cut(s)	342
BseXI	GCAGC	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	90
Bsp143I	GATC	2 cut(s)	480, 520
BspCNI	CTCAG	1 cut(s)	343
BspPI	GGATC	2 cut(s)	475, 528
BssECI	CCNNGG	2 cut(s)	424, 498
BssMI	GATC	2 cut(s)	480, 520
BssT1I	CCWWGG	1 cut(s)	424
Bst2UI	CCWGG	1 cut(s)	500
Bst4CI	ACNGT	4 cut(s)	90, 267, 478, 535
BstDEI	CTNAG	1 cut(s)	351
BstF5I	GGATG	2 cut(s)	184, 412
BstKTI	GATC	2 cut(s)	483, 523
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	2 cut(s)	480, 520
BstNI	CCWGG	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	498
BstSFI	CTRYAG	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	128
Bsu36I	CCTNAGG	1 cut(s)	351
BtsCI	GGATG	2 cut(s)	184, 412
BtsIMutI	CAGTG	1 cut(s)	474
Csp6I	GTAC	2 cut(s)	35, 531
CspCI	CAANNNNNGTGG	2 cut(s)	213, 248
CviJI	RGCY	5 cut(s)	44, 67, 119, 308, 374
CviKI_1	RGCY	5 cut(s)	44, 67, 119, 308, 374
CviQI	GTAC	2 cut(s)	35, 531
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	2 cut(s)	482, 522
DpnII	GATC	2 cut(s)	480, 520
Eco130I	CCWWGG	1 cut(s)	424
Eco32I	GATATC	1 cut(s)	394
Eco81I	CCTNAGG	1 cut(s)	351
EcoRII	CCWGG	1 cut(s)	498
EcoRV	GATATC	1 cut(s)	394
EcoT14I	CCWWGG	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	424
FaiI	YATR	7 cut(s)	21, 30, 62, 153, 322, 366, 452
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	2 cut(s)	191, 419
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	2 cut(s)	71, 185
GluI	GCNGC	1 cut(s)	117
HinfI	GANTC	2 cut(s)	98, 463
HphI	GGTGA	3 cut(s)	389, 412, 499
Hpy166II	GTNNAC	2 cut(s)	346, 538
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	2 cut(s)	71, 518
Hpy8I	GTNNAC	2 cut(s)	346, 538
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	4 cut(s)	90, 267, 478, 535
HpyCH4V	TGCA	3 cut(s)	83, 278, 413
HpyF3I	CTNAG	1 cut(s)	351
Kzo9I	GATC	2 cut(s)	480, 520
Lsp1109I	GCAGC	1 cut(s)	128
MaeI	CTAG	2 cut(s)	71, 185
MalI	GATC	2 cut(s)	482, 522
MboI	GATC	2 cut(s)	480, 520
MboII	GAAGA	3 cut(s)	26, 209, 227
MluCI	AATT	3 cut(s)	48, 248, 458
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	2 cut(s)	174, 249
MnlI	CCTC	4 cut(s)	25, 265, 346, 426
MseI	TTAA	3 cut(s)	125, 174, 332
MspA1I	CMGCKG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	500
MvaI	CCWGG	1 cut(s)	500
NdeII	GATC	2 cut(s)	480, 520
PfeI	GAWTC	1 cut(s)	463
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	498
PspGI	CCWGG	1 cut(s)	498
PvuII	CAGCTG	1 cut(s)	119
RsaI	GTAC	2 cut(s)	36, 532
RsaNI	GTAC	2 cut(s)	35, 531
SaqAI	TTAA	3 cut(s)	125, 174, 332
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	2 cut(s)	480, 520
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	500
SetI	ASST	8 cut(s)	36, 46, 121, 276, 319, 418, 504, 549
SfcI	CTRYAG	1 cut(s)	60
Sse9I	AATT	3 cut(s)	48, 248, 458
SspMI	CTAG	2 cut(s)	71, 185
StyD4I	CCNGG	1 cut(s)	498
StyI	CCWWGG	1 cut(s)	424
TaaI	ACNGT	4 cut(s)	90, 267, 478, 535
TaqI	TCGA	2 cut(s)	39, 432
TasI	AATT	3 cut(s)	48, 248, 458
TatI	WGTACW	1 cut(s)	530
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	3 cut(s)	125, 174, 332
Tru9I	TTAA	3 cut(s)	125, 174, 332
TscAI	CASTG	1 cut(s)	481
TseI	GCWGC	1 cut(s)	116
TspDTI	ATGAA	6 cut(s)	27, 159, 168, 195, 216, 309
TspRI	CASTG	1 cut(s)	481
XbaI	TCTAGA	1 cut(s)	70
XmiI	GTMKAC	1 cut(s)	537
XspI	CTAG	2 cut(s)	71, 185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.