pycom06g15550
MYB Family

Transcription factor WER-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0005570
Physical Location & Seq
Reverse (-)
20070855 .. 20072909
2055 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 942 bp
ATGAAAATGTATATCCGTACATGTATGCCAAGCAAAAGTAGTGCCGATGGCTGCAGATATAGAGAGATGGTGAAATTAGATCACCACCCACTCACTAATTCTATCACACATGAATCACACACTCTCTCCCAAGTCTCAGCACTACTAGCCACCGCATTCAGTAGACTTCCAACTAAAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTGCTTTACAACATCTGCAAGAATGGAAAGTGGGGGGAATGAGTATAAGAAAGGTCTTTGGACAGTGGAGGAAGACAGAATTCTAATGGATTATATCAGGGAGCATGGCAAGGGCAAGTGGAATCGTGTCAATAAAGTCACAGGATTGAGGAGGTGCGGCAAAAGTTGCAGATTAAGGTGGATGAACTATCTAAGTCCCAACGTGAAGAGAGGTGACTTCTCTGAGGAAGAAGATGACCTCATCATTCGACTCCATAACCTCCTTGGCAACAGATGGTCCTTGATTGCTGGACGTGTTCCTGGCAGAACTGACAACCAAGTCAAGAACCATTGGAACACTCATTTGAGCAAGAAGCTTGGTGTCAGTTCAAAGAAAGGAAAGACCAAAGCCAAGACTTATCCTGACTCAGAACGAGCAAAAAAGAACTCCTTCACGCCCTTGTCGAACTCAAACTCCGAGTTGCAGCCACTTCCCAATTCCGATTCCAATTCCAATATATTCGGTGATGATGAAGTTGCAGCTGTCATTAATGGATTTGATGATAAGATAATGAACGTCAAGGACAATAATATTGGCTTTAAAAGTGGGGTTGGTTTTAGCGAAATGTGGGAGGCGATGATGATTAGCAATGACCTTAATCTATATAGCTCTTATTTATTGGACCCTACCCTGGATGATCACTACCCTTTTCAATTTGATAATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

314

Amino Acids

35.38

Weight (kDa)

9.05

Isoelectric Point (pI)

41.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 95 - 142 2.4e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 98 - 156 9.2e-14 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 148 - 193 4e-19 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 151 - 196 1.1e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 551
AccI GTMKAC 1 cut(s) 163
AciI CCGC 2 cut(s) 153, 390
AcsI RAATTY 1 cut(s) 312
AfaI GTAC 1 cut(s) 19
AfiI CCNNNNNNNGG 1 cut(s) 904
AflIII ACRYGT 2 cut(s) 20, 526
AgsI TTSAA 2 cut(s) 603, 926
AjiI CACGTC 1 cut(s) 527
AjnI CCWGG 2 cut(s) 532, 903
AloI GAACNNNNNNTCC 2 cut(s) 671, 703
AluBI AGCT 4 cut(s) 179, 589, 755, 882
AluI AGCT 4 cut(s) 179, 589, 755, 882
Alw26I GTCTC 1 cut(s) 139
ApeKI GCWGC 3 cut(s) 51, 697, 752
ApoI RAATTY 1 cut(s) 312
AseI ATTAAT 1 cut(s) 762
Asp700I GAANNNNTTC 1 cut(s) 662
AspS9I GGNCC 2 cut(s) 510, 895
AsuHPI GGTGA 4 cut(s) 74, 82, 458, 749
AvaII GGWCC 2 cut(s) 510, 895
BbsI GAAGAC 1 cut(s) 312
BbvI GCAGC 3 cut(s) 38, 709, 764
BccI CCATC 3 cut(s) 41, 61, 501
BciT130I CCWGG 2 cut(s) 534, 905
BclI TGATCA 1 cut(s) 910
BcoDI GTCTC 1 cut(s) 139
BfaI CTAG 1 cut(s) 146
BfmI CTRYAG 1 cut(s) 52
BisI GCNGC 4 cut(s) 52, 391, 698, 753
BlsI GCNGC 4 cut(s) 53, 392, 699, 754
Bme1390I CCNGG 2 cut(s) 534, 905
Bme18I GGWCC 2 cut(s) 510, 895
BmgBI CACGTC 1 cut(s) 527
BmgT120I GGNCC 2 cut(s) 510, 895
BmiI GGNNCC 1 cut(s) 897
BmrFI CCNGG 2 cut(s) 534, 905
BpiI GAAGAC 1 cut(s) 312
BsaJI CCNNGG 2 cut(s) 496, 903
BsaXI ACNNNNNCTCC 4 cut(s) 110, 140, 671, 701
Bsc4I CCNNNNNNNGG 1 cut(s) 904
Bse3DI GCAATG 1 cut(s) 868
BseBI CCWGG 2 cut(s) 534, 905
BseDI CCNNGG 2 cut(s) 496, 903
BseGI GGATG 2 cut(s) 420, 913
BseLI CCNNNNNNNGG 1 cut(s) 904
BseMI GCAATG 1 cut(s) 868
BseMII CTCAG 3 cut(s) 150, 447, 654
BseRI GAGGAG 1 cut(s) 397
BseXI GCAGC 3 cut(s) 38, 709, 764
BslFI GGGAC 1 cut(s) 414
BslI CCNNNNNNNGG 1 cut(s) 904
BsmAI GTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 414
BsmI GAATGC 1 cut(s) 155
Bsp143I GATC 2 cut(s) 79, 910
BspACI CCGC 2 cut(s) 153, 390
BspCNI CTCAG 3 cut(s) 149, 448, 653
BspLI GGNNCC 1 cut(s) 897
BspMAI CTGCAG 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 868
BssECI CCNNGG 2 cut(s) 496, 903
BssMI GATC 2 cut(s) 79, 910
BssT1I CCWWGG 1 cut(s) 496
Bst2UI CCWGG 2 cut(s) 534, 905
Bst4CI ACNGT 1 cut(s) 298
Bst6I CTCTTC 1 cut(s) 434
BstAPI GCANNNNNTGC 1 cut(s) 399
BstDEI CTNAG 4 cut(s) 136, 425, 456, 640
BstF5I GGATG 2 cut(s) 420, 913
BstKTI GATC 2 cut(s) 82, 913
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 2 cut(s) 79, 910
BstMWI GCNNNNNNNGC 2 cut(s) 146, 399
BstNI CCWGG 2 cut(s) 534, 905
BstNSI RCATGY 1 cut(s) 24
BstSCI CCNGG 2 cut(s) 532, 903
BstSFI CTRYAG 1 cut(s) 52
BstV1I GCAGC 3 cut(s) 38, 709, 764
BstV2I GAAGAC 1 cut(s) 312
BtgZI GCGATG 1 cut(s) 863
BtrI CACGTC 1 cut(s) 527
BtsCI GGATG 2 cut(s) 420, 913
BtsIMutI CAGTG 1 cut(s) 303
Cfr13I GGNCC 2 cut(s) 510, 895
Csp6I GTAC 1 cut(s) 18
CviAII CATG 3 cut(s) 21, 110, 338
CviJI RGCY 9 cut(s) 51, 149, 179, 589, 623, 700, 755, 810, 882
CviKI_1 RGCY 9 cut(s) 51, 149, 179, 589, 623, 700, 755, 810, 882
CviQI GTAC 1 cut(s) 18
DdeI CTNAG 4 cut(s) 136, 425, 456, 640
DpnI GATC 2 cut(s) 81, 912
DpnII GATC 2 cut(s) 79, 910
DraI TTTAAA 1 cut(s) 814
DrdI GACNNNNNNGTC 1 cut(s) 551
DseDI GACNNNNNNGTC 1 cut(s) 551
Eam1104I CTCTTC 1 cut(s) 434
EarI CTCTTC 1 cut(s) 434
Eco130I CCWWGG 1 cut(s) 496
Eco47I GGWCC 2 cut(s) 510, 895
EcoRI GAATTC 1 cut(s) 312
EcoRII CCWGG 2 cut(s) 532, 903
EcoT14I CCWWGG 1 cut(s) 496
ErhI CCWWGG 1 cut(s) 496
FaeI CATG 3 cut(s) 24, 113, 341
FalI AAGNNNNNCTT 2 cut(s) 647, 679
FaqI GGGAC 1 cut(s) 414
FatI CATG 3 cut(s) 20, 109, 337
FbaI TGATCA 1 cut(s) 910
FblI GTMKAC 1 cut(s) 163
Fnu4HI GCNGC 4 cut(s) 52, 391, 698, 753
FokI GGATG 2 cut(s) 427, 920
Fsp4HI GCNGC 4 cut(s) 52, 391, 698, 753
FspBI CTAG 1 cut(s) 146
GluI GCNGC 4 cut(s) 52, 391, 698, 753
Hin1II CATG 3 cut(s) 24, 113, 341
HindIII AAGCTT 1 cut(s) 587
HinfI GANTC 5 cut(s) 113, 355, 483, 638, 716
HphI GGTGA 4 cut(s) 74, 82, 458, 749
Hpy166II GTNNAC 1 cut(s) 164
Hpy188I TCNGA 4 cut(s) 457, 643, 691, 715
Hpy188III TCNNGA 2 cut(s) 556, 635
Hpy8I GTNNAC 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 673
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4IV ACGT 3 cut(s) 435, 526, 789
HpyCH4V TGCA 5 cut(s) 54, 251, 402, 697, 752
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 399
HpyF3I CTNAG 4 cut(s) 136, 425, 456, 640
HpySE526I ACGT 3 cut(s) 435, 526, 789
Hsp92II CATG 3 cut(s) 24, 113, 341
Ksp22I TGATCA 1 cut(s) 910
Kzo9I GATC 2 cut(s) 79, 910
LmnI GCTCC 1 cut(s) 334
LpnPI CCDG 9 cut(s) 247, 316, 360, 507, 519, 546, 648, 890, 917
Lsp1109I GCAGC 3 cut(s) 38, 709, 764
MaeI CTAG 1 cut(s) 146
MaeII ACGT 3 cut(s) 435, 526, 789
MaeIII GTNAC 2 cut(s) 370, 446
MalI GATC 2 cut(s) 81, 912
MboI GATC 2 cut(s) 79, 910
MboII GAAGA 4 cut(s) 317, 451, 473, 476
MluCI AATT 7 cut(s) 74, 97, 312, 709, 721, 926, 934
MlyI GAGTC 2 cut(s) 477, 632
MmeI TCCRAC 1 cut(s) 194
MnlI CCTC 8 cut(s) 295, 375, 378, 437, 451, 482, 503, 838
MroXI GAANNNNTTC 1 cut(s) 662
MseI TTAA 4 cut(s) 407, 762, 813, 870
MspA1I CMGCKG 1 cut(s) 755
MspR9I CCNGG 2 cut(s) 534, 905
Mva1269I GAATGC 1 cut(s) 155
MvaI CCWGG 2 cut(s) 534, 905
MwoI GCNNNNNNNGC 2 cut(s) 146, 399
NdeII GATC 2 cut(s) 79, 910
NlaIII CATG 3 cut(s) 24, 113, 341
NlaIV GGNNCC 1 cut(s) 897
NmuCI GTSAC 2 cut(s) 370, 446
NspI RCATGY 1 cut(s) 24
PciI ACATGT 1 cut(s) 20
PcsI WCGNNNNNNNCGW 1 cut(s) 674
PctI GAATGC 1 cut(s) 155
PdmI GAANNNNTTC 1 cut(s) 662
PfeI GAWTC 3 cut(s) 113, 355, 716
PkrI GCNGC 4 cut(s) 53, 392, 699, 754
PleI GAGTC 2 cut(s) 477, 632
PpsI GAGTC 2 cut(s) 477, 632
PscI ACATGT 1 cut(s) 20
PshBI ATTAAT 1 cut(s) 762
Psp6I CCWGG 2 cut(s) 532, 903
PspGI CCWGG 2 cut(s) 532, 903
PspN4I GGNNCC 1 cut(s) 897
PspPI GGNCC 2 cut(s) 510, 895
PstI CTGCAG 1 cut(s) 56
PvuII CAGCTG 1 cut(s) 755
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
SaqAI TTAA 4 cut(s) 407, 762, 813, 870
SatI GCNGC 4 cut(s) 52, 391, 698, 753
Sau3AI GATC 2 cut(s) 79, 910
Sau96I GGNCC 2 cut(s) 510, 895
SchI GAGTC 2 cut(s) 477, 632
ScrFI CCNGG 2 cut(s) 534, 905
SfcI CTRYAG 1 cut(s) 52
SinI GGWCC 2 cut(s) 510, 895
Sse9I AATT 7 cut(s) 74, 97, 312, 709, 721, 926, 934
SsiI CCGC 2 cut(s) 153, 390
SspI AATATT 1 cut(s) 805
SspMI CTAG 1 cut(s) 146
StyD4I CCNGG 2 cut(s) 532, 903
StyI CCWWGG 1 cut(s) 496
TaaI ACNGT 1 cut(s) 298
TaiI ACGT 3 cut(s) 438, 529, 792
TaqI TCGA 2 cut(s) 481, 677
TasI AATT 7 cut(s) 74, 97, 312, 709, 721, 926, 934
TauI GCSGC 1 cut(s) 393
TfiI GAWTC 3 cut(s) 113, 355, 716
Tru1I TTAA 4 cut(s) 407, 762, 813, 870
Tru9I TTAA 4 cut(s) 407, 762, 813, 870
TscAI CASTG 1 cut(s) 303
TseFI GTSAC 2 cut(s) 370, 446
TseI GCWGC 3 cut(s) 51, 697, 752
Tsp45I GTSAC 2 cut(s) 370, 446
TspDTI ATGAA 5 cut(s) 17, 126, 431, 759, 800
TspGWI ACGGA 1 cut(s) 5
TspRI CASTG 1 cut(s) 303
VpaK11BI GGWCC 2 cut(s) 510, 895
VspI ATTAAT 1 cut(s) 762
XapI RAATTY 1 cut(s) 312
XceI RCATGY 1 cut(s) 24
XcmI CCANNNNNNNNNTGG 1 cut(s) 494
XmiI GTMKAC 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 662
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.