pycom06g20580

Chaperone protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0001723
Physical Location & Seq
Reverse (-)
23544957 .. 23547612
2656 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 837 bp
ATGTCACGTAAGTTGTTATCTCAAAATAGAAATGAATCCCAGCAAGTCAATTATCACCTACTATTTTTGGTGCTCCATCAGGCTTCTTCTTCTTCTTCTTCTTCTTCACGGAAATCCCTTCACCCAAAAACCTCTGCAAAACCCCCAACACCTCCCAATCTCCATAACCCATCTCCACCGTCAATTTTCAATCTCAAAAATCGAAGTATGCCCGTGACCCAAAGCACCTGCACCTCCAATTTCCCGCCAAATCCCAACTCTGCGGTTCCACTTCCGCCCTATTCTTTGAGCTGCTCCGCCCTCAGCTCCGCCGCTTCTACATTCTTCACCAGAAGTAAAAACCCAATCTTCAAATCCAATTCAGCTCCTCTCCTCCGCGCCAAGCCCCAGCGCGGCTCTCGGTTAATCGCCAGTGCCGCGGGAACCGATTACTATAAGACCCTTAACGTCCTCAGAACTGCCACGCTGCAGGAGATCAAGTCCGCCTACCGAAAGAAATTGAAGTTTCTTGTGTTGAGATGTGATGACTGTGGTGGAACAGGTGCTAAATCTGATAAAGGAATAAAATCATGTACTGGTTGTGGAGGAAGAGGAGGGGTGATGAAAACTCAGAAAACACCATTTGGAATGATATCGCAGGTATCAACCTGTTCAAAATGTGGTGGTGATGGTATAATAATCACTGATCCTTGCCAGAGATGCAGTGGTGACGGACAAGTGCAGTCAACAAGAACTACGAACGTGATCATCCCAGTTGGTGTTAATGATGGATCCACAATGCAAATTCAAGGAGAGGGGAATTTAAGGGCAGGGGTAAAGCTGGTGATGTCTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

279

Amino Acids

29.63

Weight (kDa)

10.08

Isoelectric Point (pI)

46.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ_CXXCXGXG PF00684 174 - 238 6.6e-14 DnaJ central domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 236
Acc36I ACCTGC 2 cut(s) 236, 628
AccI GTMKAC 1 cut(s) 830
AccII CGCG 3 cut(s) 378, 393, 419
AclWI GGATC 3 cut(s) 680, 765, 778
AcsI RAATTY 2 cut(s) 783, 799
AfaI GTAC 1 cut(s) 574
AfiI CCNNNNNNNGG 1 cut(s) 392
AgsI TTSAA 5 cut(s) 190, 352, 502, 654, 788
AluBI AGCT 4 cut(s) 291, 306, 365, 820
AluI AGCT 4 cut(s) 291, 306, 365, 820
Alw21I GWGCWC 1 cut(s) 75
AlwI GGATC 3 cut(s) 680, 765, 778
ApeKI GCWGC 2 cut(s) 291, 466
ApoI RAATTY 2 cut(s) 783, 799
AspLEI GCGC 2 cut(s) 380, 393
AsuHPI GGTGA 7 cut(s) 47, 113, 319, 610, 677, 719, 835
BamHI GGATCC 1 cut(s) 770
Bbv12I GWGCWC 1 cut(s) 75
BbvCI CCTCAGC 1 cut(s) 302
BbvI GCAGC 2 cut(s) 278, 453
BccI CCATC 4 cut(s) 84, 178, 662, 761
BclI TGATCA 1 cut(s) 744
BfmI CTRYAG 1 cut(s) 467
BfuAI ACCTGC 2 cut(s) 236, 628
BisI GCNGC 5 cut(s) 292, 312, 394, 417, 467
BlsI GCNGC 5 cut(s) 293, 313, 395, 418, 468
BmiI GGNNCC 3 cut(s) 267, 424, 772
BmrI ACTGGG 1 cut(s) 746
BmsI GCATC 1 cut(s) 689
BmuI ACTGGG 1 cut(s) 746
Bpu10I CCTNAGC 1 cut(s) 302
BsaAI YACGTR 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 417
BsaXI ACNNNNNCTCC 2 cut(s) 464, 494
Bsc4I CCNNNNNNNGG 1 cut(s) 392
Bse1I ACTGG 3 cut(s) 411, 580, 752
BseDI CCNNGG 1 cut(s) 417
BseGI GGATG 1 cut(s) 747
BseLI CCNNNNNNNGG 1 cut(s) 392
BseMII CTCAG 3 cut(s) 316, 466, 623
BseNI ACTGG 3 cut(s) 411, 580, 752
BseRI GAGGAG 3 cut(s) 357, 362, 606
BseXI GCAGC 2 cut(s) 278, 453
BseYI CCCAGC 2 cut(s) 39, 387
BsgI GTGCAG 2 cut(s) 214, 740
Bsh1236I CGCG 3 cut(s) 378, 393, 419
BsiHKAI GWGCWC 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 392
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 4 cut(s) 474, 685, 744, 770
BspCNI CTCAG 3 cut(s) 315, 465, 622
BspFNI CGCG 3 cut(s) 378, 393, 419
BspLI GGNNCC 3 cut(s) 267, 424, 772
BspMAI CTGCAG 1 cut(s) 471
BspMI ACCTGC 2 cut(s) 236, 628
BspPI GGATC 3 cut(s) 680, 765, 778
BsrI ACTGG 3 cut(s) 411, 580, 752
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 4 cut(s) 474, 685, 744, 770
Bst4CI ACNGT 2 cut(s) 180, 530
Bst6I CTCTTC 1 cut(s) 583
BstBAI YACGTR 1 cut(s) 8
BstDEI CTNAG 3 cut(s) 302, 452, 609
BstDSI CCRYGG 1 cut(s) 417
BstF5I GGATG 1 cut(s) 747
BstFNI CGCG 3 cut(s) 378, 393, 419
BstHHI GCGC 2 cut(s) 380, 393
BstKTI GATC 4 cut(s) 477, 688, 747, 773
BstMBI GATC 4 cut(s) 474, 685, 744, 770
BstMWI GCNNNNNNNGC 2 cut(s) 416, 699
BstSFI CTRYAG 1 cut(s) 467
BstUI CGCG 3 cut(s) 378, 393, 419
BstV1I GCAGC 2 cut(s) 278, 453
BstX2I RGATCY 1 cut(s) 770
BstYI RGATCY 1 cut(s) 770
BtgI CCRYGG 1 cut(s) 417
BtsCI GGATG 1 cut(s) 747
BtsI GCAGTG 1 cut(s) 709
BtsIMutI CAGTG 3 cut(s) 418, 681, 709
BveI ACCTGC 2 cut(s) 236, 628
CfoI GCGC 2 cut(s) 380, 393
Cfr42I CCGCGG 1 cut(s) 420
Csp6I GTAC 1 cut(s) 573
CviAII CATG 1 cut(s) 570
CviJI RGCY 7 cut(s) 83, 291, 306, 365, 385, 396, 820
CviKI_1 RGCY 7 cut(s) 83, 291, 306, 365, 385, 396, 820
CviQI GTAC 1 cut(s) 573
DdeI CTNAG 3 cut(s) 302, 452, 609
DpnI GATC 4 cut(s) 476, 687, 746, 772
DpnII GATC 4 cut(s) 474, 685, 744, 770
Eam1104I CTCTTC 1 cut(s) 583
EarI CTCTTC 1 cut(s) 583
EciI GGCGGA 4 cut(s) 264, 286, 298, 472
Eco32I GATATC 1 cut(s) 633
EcoRV GATATC 1 cut(s) 633
FaeI CATG 1 cut(s) 573
FaiI YATR 6 cut(s) 165, 209, 435, 571, 674, 835
FatI CATG 1 cut(s) 569
FauI CCCGC 2 cut(s) 252, 412
FbaI TGATCA 1 cut(s) 744
FblI GTMKAC 1 cut(s) 830
Fnu4HI GCNGC 5 cut(s) 292, 312, 394, 417, 467
FokI GGATG 1 cut(s) 734
Fsp4HI GCNGC 5 cut(s) 292, 312, 394, 417, 467
GlaI GCGC 2 cut(s) 379, 392
GluI GCNGC 5 cut(s) 292, 312, 394, 417, 467
GsaI CCCAGC 2 cut(s) 43, 391
HhaI GCGC 2 cut(s) 380, 393
Hin1II CATG 1 cut(s) 573
Hin6I GCGC 2 cut(s) 378, 391
HinP1I GCGC 2 cut(s) 378, 391
HincII GTYRAC 1 cut(s) 726
HindII GTYRAC 1 cut(s) 726
HinfI GANTC 1 cut(s) 35
HphI GGTGA 7 cut(s) 47, 113, 319, 610, 677, 719, 835
Hpy166II GTNNAC 2 cut(s) 726, 831
Hpy188I TCNGA 3 cut(s) 455, 553, 612
Hpy8I GTNNAC 2 cut(s) 726, 831
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 2 cut(s) 180, 530
HpyCH4IV ACGT 3 cut(s) 7, 447, 741
HpyCH4V TGCA 6 cut(s) 137, 231, 469, 702, 721, 781
HpyF10VI GCNNNNNNNGC 2 cut(s) 416, 699
HpyF3I CTNAG 3 cut(s) 302, 452, 609
HpySE526I ACGT 3 cut(s) 7, 447, 741
Hsp92II CATG 1 cut(s) 573
HspAI GCGC 2 cut(s) 378, 391
Ksp22I TGATCA 1 cut(s) 744
KspI CCGCGG 1 cut(s) 420
Kzo9I GATC 4 cut(s) 474, 685, 744, 770
LmnI GCTCC 4 cut(s) 78, 299, 311, 370
Lsp1109I GCAGC 2 cut(s) 278, 453
LweI GCATC 1 cut(s) 689
MaeII ACGT 3 cut(s) 7, 447, 741
MaeIII GTNAC 3 cut(s) 3, 214, 707
MalI GATC 4 cut(s) 476, 687, 746, 772
MboI GATC 4 cut(s) 474, 685, 744, 770
MflI RGATCY 1 cut(s) 770
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 7 cut(s) 49, 183, 238, 358, 497, 783, 799
MseI TTAA 4 cut(s) 404, 444, 762, 803
MspA1I CMGCKG 1 cut(s) 419
MvnI CGCG 3 cut(s) 378, 393, 419
MwoI GCNNNNNNNGC 2 cut(s) 416, 699
NdeII GATC 4 cut(s) 474, 685, 744, 770
NlaIII CATG 1 cut(s) 573
NlaIV GGNNCC 3 cut(s) 267, 424, 772
NmuCI GTSAC 3 cut(s) 3, 214, 707
PaqCI CACCTGC 1 cut(s) 236
PfeI GAWTC 1 cut(s) 35
PkrI GCNGC 5 cut(s) 293, 313, 395, 418, 468
Ppu21I YACGTR 1 cut(s) 8
PspFI CCCAGC 2 cut(s) 39, 387
PspN4I GGNNCC 3 cut(s) 267, 424, 772
PstI CTGCAG 1 cut(s) 471
PsuI RGATCY 1 cut(s) 770
RsaI GTAC 1 cut(s) 574
RsaNI GTAC 1 cut(s) 573
SacII CCGCGG 1 cut(s) 420
SaqAI TTAA 4 cut(s) 404, 444, 762, 803
SatI GCNGC 5 cut(s) 292, 312, 394, 417, 467
Sau3AI GATC 4 cut(s) 474, 685, 744, 770
SduI GDGCHC 1 cut(s) 75
SfaNI GCATC 1 cut(s) 689
SfcI CTRYAG 1 cut(s) 467
Sfr303I CCGCGG 1 cut(s) 420
SgrBI CCGCGG 1 cut(s) 420
Sse9I AATT 7 cut(s) 49, 183, 238, 358, 497, 783, 799
TaaI ACNGT 2 cut(s) 180, 530
TaiI ACGT 3 cut(s) 10, 450, 744
TaqI TCGA 1 cut(s) 202
TasI AATT 7 cut(s) 49, 183, 238, 358, 497, 783, 799
TatI WGTACW 1 cut(s) 572
TauI GCSGC 3 cut(s) 314, 396, 419
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 4 cut(s) 404, 444, 762, 803
Tru9I TTAA 4 cut(s) 404, 444, 762, 803
TscAI CASTG 3 cut(s) 418, 688, 709
TseFI GTSAC 3 cut(s) 3, 214, 707
TseI GCWGC 2 cut(s) 291, 466
Tsp45I GTSAC 3 cut(s) 3, 214, 707
TspDTI ATGAA 2 cut(s) 48, 617
TspGWI ACGGA 2 cut(s) 124, 726
TspRI CASTG 3 cut(s) 418, 688, 709
XapI RAATTY 2 cut(s) 783, 799
XcmI CCANNNNNNNNNTGG 1 cut(s) 701
XmiI GTMKAC 1 cut(s) 830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.