Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002105

Physical Location & Seq

Genomic Coordinates Forward (+)

23668094 .. 23669994

Gene Structure 1901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGATTGCTCTCACTATGAAACTCACTGAGAGCTTGTTCAAGCCTCTTTTCATTAGGAGTATTGATTGGGCAGAGTCAGATGTGGAAGATGTTGCAAGTATGGGAAATATACCTAGGGCTATATCTTTCTATGGTCTGGTAAATAAACTTGCTGAGAACCATCGATCCCTTTTTGTTCCTTACTTCAAATACTTGGTGGAGGGTTGTGTGCGTTACCTTACTGTTGCTGGAGATGTGAATACTTCTGGTTCAACACGAAAAAAGAAGGCTAAAATTCAGGAAGGGAAGGACAACAGTATATTGCTTGGCAACTGGCATCTCAGGGCTTTGGTGTTATCGTCTTTACACAAGTGTTTTCTCTATGATACTGGAAGCCTGAAGTTTTTGGACTCTTCAAATTTTCAGGTTCTACTGAAACCCATTGTTTCACAGCTCGTCGCTGAACCACCATCGTCTCTAGAAGGGCATCCAGACATACCATCCATGGAGGAAGTTGATAATTTATTGGTGGTTTGTATTGGTCAAATGGCTGTGACTGCAGGAAGTGACCTTTTATGGAAGCCCTTGAATTATGAGGTGCTGATGCAGACACGCAGTGACAAGGTACGGACCCGAATTTTGGGCCTGAGAATTGTTAAGTATCTATTGGAGCATCTGAGAGAAGAATATCTGGTATTCCTGCCCGAGACCATTCCGATCTTGGGAGAACTGCTCGAGGATGTGGAGCTCCCTGTTAAATCTCTTGCGCAGTCGATTCTCAAGGATATGGAGACCATGAGTGGTGAAAGCCTCAGAGAGTACCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006355 GO:0006356 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034455 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

BP28CT U3snoRNP10

Protein Analysis

269

Amino Acids

30.23

Weight (kDa)

5.64

Isoelectric Point (pI)

35.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BP28CT	PF08146	1 - 125	2.1e-29	BP28CT (NUC211) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002105)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06530 AT3G06530 AT3G06530 AT3G06530 AT3G06530
fragaria_vesca	FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990 FvH4_7g26990
malus_domestica	MD07G1249300.v1.1
prunus_persica	Prupe.2G273000_v2.0.a1 Prupe.2G273000_v2.0.a1 Prupe.2G273000_v2.0.a1
pyrus_communis	pycom01g18810 pycom01g18840 pycom05g24490 pycom07g22250 pycom07g22260
rosa_chinensis	RchiOBHm_Chr1g0373711 RchiOBHm_Chr1g0373721 RchiOBHm_Chr5g0059891 RchiOBHm_Chr7g0224071
rosa_laevigata	RLG00000026806
rosa_multiflora	Rmu_co8395535.1_g000001 Rmu_sc0002606.1_g000003 Rmu_sc0002606.1_g000005 Rmu_sc0010519.1_g000004 Rmu_sc0023430.1_g000002
rosa_roxburghii	Rroxscaffold_4G00284050 Rroxscaffold_5G00353230
rosa_rugosa	Rorug01G0379200
rosa_samantha	Rh1AG388500 Rh1BG352900 Rh1CG365800 Rh1DG383300 Rh3AG266200 Rh3DG308600
rosa_wichuraiana	Rw1G034670 Rw3G029530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	747
AclWI	GGATC	1 cut(s)	159
AcsI	RAATTY	3 cut(s)	273, 397, 615
AcuI	CTGAAG	1 cut(s)	398
AdeI	CACNNNGTG	1 cut(s)	596
AfaI	GTAC	2 cut(s)	606, 800
AfiI	CCNNNNNNNGG	2 cut(s)	619, 701
AgsI	TTSAA	5 cut(s)	40, 187, 252, 396, 568
AloI	GAACNNNNNNTCC	2 cut(s)	149, 181
AluBI	AGCT	3 cut(s)	33, 433, 727
AluI	AGCT	3 cut(s)	33, 433, 727
Alw21I	GWGCWC	1 cut(s)	729
Alw26I	GTCTC	3 cut(s)	459, 680, 764
AlwI	GGATC	1 cut(s)	159
Ama87I	CYCGRG	2 cut(s)	683, 713
AoxI	GGCC	1 cut(s)	622
ApoI	RAATTY	3 cut(s)	273, 397, 615
ArsI	GACNNNNNNTTYG	2 cut(s)	601, 633
AspA2I	CCTAGG	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	748
AspS9I	GGNCC	2 cut(s)	609, 622
AsuHPI	GGTGA	1 cut(s)	794
AvaI	CYCGRG	2 cut(s)	683, 713
AvaII	GGWCC	1 cut(s)	609
AvrII	CCTAGG	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	729
Bbv12I	GWGCWC	1 cut(s)	729
BccI	CCATC	3 cut(s)	168, 457, 487
BcoDI	GTCTC	3 cut(s)	459, 680, 764
BfaI	CTAG	2 cut(s)	114, 458
BfmI	CTRYAG	1 cut(s)	537
BlnI	CCTAGG	1 cut(s)	113
Bme18I	GGWCC	1 cut(s)	609
BmeT110I	CYCGRG	2 cut(s)	683, 713
BmgT120I	GGNCC	2 cut(s)	609, 622
BmiI	GGNNCC	1 cut(s)	611
BmsI	GCATC	4 cut(s)	325, 475, 573, 661
BplI	GAGNNNNNCTC	2 cut(s)	696, 728
BpmI	CTGGAG	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	743
Bsa29I	ATCGAT	1 cut(s)	163
BsaI	GGTCTC	2 cut(s)	680, 764
BsaJI	CCNNGG	2 cut(s)	113, 483
Bsc4I	CCNNNNNNNGG	2 cut(s)	619, 701
Bse1I	ACTGG	2 cut(s)	317, 373
BseCI	ATCGAT	1 cut(s)	163
BseDI	CCNNGG	2 cut(s)	113, 483
BseGI	GGATG	3 cut(s)	466, 479, 724
BseLI	CCNNNNNNNGG	2 cut(s)	619, 701
BseMII	CTCAG	6 cut(s)	18, 144, 334, 617, 647, 805
BseNI	ACTGG	2 cut(s)	317, 373
BshFI	GGCC	1 cut(s)	624
BshVI	ATCGAT	1 cut(s)	163
BsiHKAI	GWGCWC	1 cut(s)	729
BsiHKCI	CYCGRG	2 cut(s)	683, 713
BslI	CCNNNNNNNGG	2 cut(s)	619, 701
BsmAI	GTCTC	3 cut(s)	459, 680, 764
BsmBI	CGTCTC	1 cut(s)	459
BsnI	GGCC	1 cut(s)	624
Bso31I	GGTCTC	2 cut(s)	680, 764
BsoBI	CYCGRG	2 cut(s)	683, 713
Bsp1286I	GDGCHC	1 cut(s)	729
Bsp143I	GATC	2 cut(s)	164, 696
Bsp19I	CCATGG	1 cut(s)	483
BspANI	GGCC	1 cut(s)	624
BspCNI	CTCAG	6 cut(s)	19, 145, 333, 618, 648, 804
BspDI	ATCGAT	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	611
BspMAI	CTGCAG	1 cut(s)	541
BspPI	GGATC	1 cut(s)	159
BspTNI	GGTCTC	2 cut(s)	680, 764
BsrI	ACTGG	2 cut(s)	317, 373
BssECI	CCNNGG	2 cut(s)	113, 483
BssMI	GATC	2 cut(s)	164, 696
BssT1I	CCWWGG	2 cut(s)	113, 483
Bst4CI	ACNGT	2 cut(s)	223, 296
Bst6I	CTCTTC	1 cut(s)	397
BstDEI	CTNAG	6 cut(s)	27, 153, 320, 626, 656, 791
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	3 cut(s)	466, 479, 724
BstHHI	GCGC	1 cut(s)	748
BstKTI	GATC	2 cut(s)	167, 699
BstMAI	GTCTC	3 cut(s)	459, 680, 764
BstMBI	GATC	2 cut(s)	164, 696
BstMWI	GCNNNNNNNGC	1 cut(s)	536
BstSFI	CTRYAG	1 cut(s)	537
Bsu15I	ATCGAT	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	624
BsuTUI	ATCGAT	1 cut(s)	163
BtgI	CCRYGG	1 cut(s)	483
BtsCI	GGATG	3 cut(s)	466, 479, 724
BtsI	GCAGTG	1 cut(s)	601
BtsIMutI	CAGTG	2 cut(s)	24, 601
CfoI	GCGC	1 cut(s)	748
Cfr13I	GGNCC	2 cut(s)	609, 622
ClaI	ATCGAT	1 cut(s)	163
Csp6I	GTAC	2 cut(s)	605, 799
CviAII	CATG	2 cut(s)	484, 775
CviQI	GTAC	2 cut(s)	605, 799
DdeI	CTNAG	6 cut(s)	27, 153, 320, 626, 656, 791
DpnI	GATC	2 cut(s)	166, 698
DpnII	GATC	2 cut(s)	164, 696
DraIII	CACNNNGTG	1 cut(s)	596
Eam1104I	CTCTTC	1 cut(s)	397
EarI	CTCTTC	1 cut(s)	397
Ecl136II	GAGCTC	1 cut(s)	727
Eco130I	CCWWGG	2 cut(s)	113, 483
Eco24I	GRGCYC	1 cut(s)	729
Eco31I	GGTCTC	2 cut(s)	680, 764
Eco47I	GGWCC	1 cut(s)	609
Eco53kI	GAGCTC	1 cut(s)	727
Eco57I	CTGAAG	1 cut(s)	398
Eco88I	CYCGRG	2 cut(s)	683, 713
EcoICRI	GAGCTC	1 cut(s)	727
EcoT14I	CCWWGG	2 cut(s)	113, 483
EcoT38I	GRGCYC	1 cut(s)	729
ErhI	CCWWGG	2 cut(s)	113, 483
Esp3I	CGTCTC	1 cut(s)	459
FaeI	CATG	2 cut(s)	487, 778
FatI	CATG	2 cut(s)	483, 774
FokI	GGATG	3 cut(s)	453, 466, 731
FriOI	GRGCYC	1 cut(s)	729
FspBI	CTAG	2 cut(s)	114, 458
FspI	TGCGCA	1 cut(s)	747
GlaI	GCGC	1 cut(s)	747
GsuI	CTGGAG	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	624
HhaI	GCGC	1 cut(s)	748
Hin1II	CATG	2 cut(s)	487, 778
Hin6I	GCGC	1 cut(s)	746
HinP1I	GCGC	1 cut(s)	746
HinfI	GANTC	3 cut(s)	74, 389, 754
HphI	GGTGA	1 cut(s)	794
Hpy188I	TCNGA	4 cut(s)	79, 657, 696, 794
Hpy188III	TCNNGA	3 cut(s)	278, 458, 470
Hpy99I	CGWCG	1 cut(s)	440
HpyAV	CCTTC	4 cut(s)	259, 275, 280, 455
HpyCH4III	ACNGT	2 cut(s)	223, 296
HpyCH4V	TGCA	3 cut(s)	95, 539, 586
HpyF10VI	GCNNNNNNNGC	1 cut(s)	536
HpyF3I	CTNAG	6 cut(s)	27, 153, 320, 626, 656, 791
Hsp92II	CATG	2 cut(s)	487, 778
HspAI	GCGC	1 cut(s)	746
Kzo9I	GATC	2 cut(s)	164, 696
LmnI	GCTCC	3 cut(s)	649, 724, 732
LweI	GCATC	4 cut(s)	325, 475, 573, 661
MaeI	CTAG	2 cut(s)	114, 458
MaeIII	GTNAC	4 cut(s)	212, 532, 545, 596
MalI	GATC	2 cut(s)	166, 698
MboI	GATC	2 cut(s)	164, 696
MboII	GAAGA	3 cut(s)	98, 384, 674
MhlI	GDGCHC	1 cut(s)	729
MluCI	AATT	6 cut(s)	273, 397, 499, 568, 615, 630
MlyI	GAGTC	2 cut(s)	83, 383
MnlI	CCTC	6 cut(s)	54, 193, 481, 568, 709, 800
MseI	TTAA	2 cut(s)	636, 735
MwoI	GCNNNNNNNGC	1 cut(s)	536
NcoI	CCATGG	1 cut(s)	483
NdeII	GATC	2 cut(s)	164, 696
NlaIII	CATG	2 cut(s)	487, 778
NlaIV	GGNNCC	1 cut(s)	611
NmuCI	GTSAC	3 cut(s)	532, 545, 596
NsbI	TGCGCA	1 cut(s)	747
PaeR7I	CTCGAG	1 cut(s)	713
PfeI	GAWTC	1 cut(s)	754
PleI	GAGTC	2 cut(s)	82, 383
PpsI	GAGTC	2 cut(s)	82, 383
Psp124BI	GAGCTC	1 cut(s)	729
PspN4I	GGNNCC	1 cut(s)	611
PspPI	GGNCC	2 cut(s)	609, 622
PspXI	VCTCGAGB	1 cut(s)	713
PstI	CTGCAG	1 cut(s)	541
RsaI	GTAC	2 cut(s)	606, 800
RsaNI	GTAC	2 cut(s)	605, 799
SacI	GAGCTC	1 cut(s)	729
SaqAI	TTAA	2 cut(s)	636, 735
Sau3AI	GATC	2 cut(s)	164, 696
Sau96I	GGNCC	2 cut(s)	609, 622
SchI	GAGTC	2 cut(s)	83, 383
SduI	GDGCHC	1 cut(s)	729
SfaNI	GCATC	4 cut(s)	325, 475, 573, 661
SfcI	CTRYAG	1 cut(s)	537
Sfr274I	CTCGAG	1 cut(s)	713
SinI	GGWCC	1 cut(s)	609
SlaI	CTCGAG	1 cut(s)	713
SmlI	CTYRAG	2 cut(s)	713, 758
SmoI	CTYRAG	2 cut(s)	713, 758
Sse9I	AATT	6 cut(s)	273, 397, 499, 568, 615, 630
SspMI	CTAG	2 cut(s)	114, 458
SstI	GAGCTC	1 cut(s)	729
StyI	CCWWGG	2 cut(s)	113, 483
TaaI	ACNGT	2 cut(s)	223, 296
TaqI	TCGA	3 cut(s)	163, 714, 752
TasI	AATT	6 cut(s)	273, 397, 499, 568, 615, 630
TfiI	GAWTC	1 cut(s)	754
Tru1I	TTAA	2 cut(s)	636, 735
Tru9I	TTAA	2 cut(s)	636, 735
TscAI	CASTG	2 cut(s)	31, 601
TseFI	GTSAC	3 cut(s)	532, 545, 596
Tsp45I	GTSAC	3 cut(s)	532, 545, 596
TspDTI	ATGAA	2 cut(s)	32, 40
TspGWI	ACGGA	1 cut(s)	622
TspRI	CASTG	2 cut(s)	31, 601
VpaK11BI	GGWCC	1 cut(s)	609
XapI	RAATTY	3 cut(s)	273, 397, 615
XbaI	TCTAGA	1 cut(s)	457
XcmI	CCANNNNNNNNNTGG	1 cut(s)	697
XhoI	CTCGAG	1 cut(s)	713
XmaJI	CCTAGG	1 cut(s)	113
XspI	CTAG	2 cut(s)	114, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.