Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005396

Physical Location & Seq

Genomic Coordinates Forward (+)

24031540 .. 24032790

Gene Structure 1251 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGCGCTTTCCTCATTGTTATTGTTTATATGTTTTTCACTATATTATTAGCTCTTTATATTCTACTTTTTTTAATTTGCTGGGTCTAGCGCACGAACTAAAATTTACCCTCAAGCTAGCGAATGAGCATTTTGGATTTTTAAAATGGCTAGCCTGGACTTCATTTATTTTTATTTTTATTTTCAAGAATGGCATCCTATCACACACAGACACACACAAACCCATCAATCCAAGACAACAAAAATGGGTGCTCAAATTTTCAAAACCCCAACTTCAAATTCACACCATCACAAACATGCAAACAACTGTGGCAACCTCCTCTTCCTCTCAAACCTACAAAACCTACGTCAAAACCGCCTGCAATTCAACCACATACCCACTCATTTGCTACAAATCCCTCTCCTCGTACGCTTCCAAAATCAAATCCAACCCTCGAAAGCTTTGTATCTATGCCCTCTCTGTGACCCTAACAGCTTCGAAAAATGCCTCTTCCGTAGTGTCAAAGCAGTCTAAGAAGGCAGGACTAACCCCAACGGAGAAAGTGGTCATCAACGATTGCTTAGAAAATATTAAGGAATCCATCGACGAGCTCAAAGATTCATTGACTTCAATGAAGAATTTGGGGGTCACGGGTGGGGACGTGCAAGCGCAATTAGATGATATAAAGACTTGGGTCAGTGCTGTCCTCACAGACGACGCTACGTGCACTGATGAATTTGATGATGTGAAGGTAAGCACGGCGATTAAGACCGCCATCAAGAACAGCATTGTGACTGCTGCTAGGTTAGCTAGCAATTTAACGCACCCTTGTAATTCCTCGACTGTATCTATTTTCTTTTTGATATTGAACTTTAAATTGCTGGTAATTAAAAGTCTGTTGTACTTTTTTTTTTTTTTAAATTTTTTTTTTATCAAACTATTGTACTATTATTTGAGGAATTTGATTTTTGAGCAACAAATAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0030234 GO:0030312 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050789 GO:0050790 GO:0050793 GO:0051239 GO:0065007 GO:0065009 GO:0071944 GO:0098772 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

322

Amino Acids

36.52

Weight (kDa)

9.33

Isoelectric Point (pI)

22.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	115 - 265	4.5e-31	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25250 AT5G51520
fragaria_vesca	FvH4_7g27830 FvH4_7g27840
malus_domestica	MD00G1105100.v1.1 MD07G1255600.v1.1
prunus_persica	Prupe.2G279800_v2.0.a1
pyrus_communis	pycom07g22870
rosa_chinensis	RchiOBHm_Chr1g0374701 RchiOBHm_Chr1g0374711
rosa_laevigata	RLG00000026720 RLG00000026721
rosa_multiflora	Rmu_sc0004947.1_g000017 Rmu_sc0004947.1_g000018
rosa_roxburghii	Rroxscaffold_4G00283290 Rroxscaffold_4G00283300
rosa_rugosa	Rorug01G0384300 Rorug01G0384400 Rorug01G0384500
rosa_samantha	Rh1AG396000 Rh1AG396100 Rh1BG360100 Rh1BG360200 Rh1CG373500 Rh1CG373600 Rh1DG391100 Rh1DG391200
rosa_wichuraiana	Rw1G035110 Rw1G035120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	354, 750
AcsI	RAATTY	7 cut(s)	101, 254, 276, 616, 713, 898, 937
AfaI	GTAC	3 cut(s)	407, 881, 923
AgsI	TTSAA	6 cut(s)	184, 261, 275, 366, 609, 847
AjiI	CACGTC	1 cut(s)	640
AjnI	CCWGG	1 cut(s)	152
AjuI	GAANNNNNNNTTGG	2 cut(s)	261, 293
AluBI	AGCT	7 cut(s)	51, 115, 439, 473, 589, 788, 963
AluI	AGCT	7 cut(s)	51, 115, 439, 473, 589, 788, 963
Alw21I	GWGCWC	3 cut(s)	252, 591, 707
Alw44I	GTGCAC	1 cut(s)	703
ApaLI	GTGCAC	1 cut(s)	703
ApeKI	GCWGC	1 cut(s)	776
ApoI	RAATTY	7 cut(s)	101, 254, 276, 616, 713, 898, 937
ArsI	GACNNNNNNTTYG	2 cut(s)	330, 362
AspLEI	GCGC	3 cut(s)	6, 91, 649
AsuII	TTCGAA	1 cut(s)	476
AsuNHI	GCTAGC	3 cut(s)	115, 148, 788
BaeGI	GKGCMC	1 cut(s)	707
BanII	GRGCYC	1 cut(s)	591
Bbv12I	GWGCWC	3 cut(s)	252, 591, 707
BbvI	GCAGC	1 cut(s)	763
BccI	CCATC	4 cut(s)	230, 293, 587, 761
BceAI	ACGGC	1 cut(s)	753
BciT130I	CCWGG	1 cut(s)	154
BfaI	CTAG	5 cut(s)	86, 116, 149, 780, 789
BisI	GCNGC	1 cut(s)	777
BlsI	GCNGC	1 cut(s)	778
Bme1390I	CCNGG	1 cut(s)	154
BmgBI	CACGTC	1 cut(s)	640
BmrFI	CCNGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	201
BmtI	GCTAGC	3 cut(s)	119, 152, 792
BoxI	GACNNNNGTC	1 cut(s)	671
Bpu14I	TTCGAA	1 cut(s)	476
BpuEI	CTTGAG	1 cut(s)	95
BsaAI	YACGTR	1 cut(s)	702
BseBI	CCWGG	1 cut(s)	154
BseGI	GGATG	1 cut(s)	192
BseRI	GAGGAG	2 cut(s)	307, 391
BseSI	GKGCMC	1 cut(s)	707
BseXI	GCAGC	1 cut(s)	763
BseYI	CCCAGC	1 cut(s)	79
BsiHKAI	GWGCWC	3 cut(s)	252, 591, 707
BsiWI	CGTACG	1 cut(s)	405
BslFI	GGGAC	1 cut(s)	650
BsmFI	GGGAC	1 cut(s)	650
Bsp119I	TTCGAA	1 cut(s)	476
Bsp1286I	GDGCHC	3 cut(s)	252, 591, 707
BspACI	CCGC	2 cut(s)	354, 750
BspOI	GCTAGC	3 cut(s)	119, 152, 792
BspT104I	TTCGAA	1 cut(s)	476
Bst2UI	CCWGG	1 cut(s)	154
Bst4CI	ACNGT	2 cut(s)	307, 823
Bst6I	CTCTTC	2 cut(s)	325, 493
BstBAI	YACGTR	1 cut(s)	702
BstBI	TTCGAA	1 cut(s)	476
BstC8I	GCNNGC	5 cut(s)	117, 150, 358, 645, 790
BstDEI	CTNAG	2 cut(s)	510, 559
BstF5I	GGATG	1 cut(s)	192
BstHHI	GCGC	3 cut(s)	6, 91, 649
BstMWI	GCNNNNNNNGC	1 cut(s)	785
BstNI	CCWGG	1 cut(s)	154
BstNSI	RCATGY	1 cut(s)	298
BstPAI	GACNNNNGTC	1 cut(s)	671
BstSCI	CCNGG	1 cut(s)	152
BstSLI	GKGCMC	1 cut(s)	707
BstV1I	GCAGC	1 cut(s)	763
BtrI	CACGTC	1 cut(s)	640
BtsCI	GGATG	1 cut(s)	192
BtsIMutI	CAGTG	2 cut(s)	682, 705
Cac8I	GCNNGC	5 cut(s)	117, 150, 358, 645, 790
CfoI	GCGC	3 cut(s)	6, 91, 649
CseI	GACGC	1 cut(s)	704
Csp6I	GTAC	3 cut(s)	406, 880, 922
CviAII	CATG	1 cut(s)	295
CviJI	RGCY	9 cut(s)	51, 115, 148, 152, 439, 473, 589, 788, 963
CviKI_1	RGCY	9 cut(s)	51, 115, 148, 152, 439, 473, 589, 788, 963
CviQI	GTAC	3 cut(s)	406, 880, 922
DdeI	CTNAG	2 cut(s)	510, 559
DraI	TTTAAA	3 cut(s)	141, 853, 897
Eam1104I	CTCTTC	2 cut(s)	325, 493
EarI	CTCTTC	2 cut(s)	325, 493
Ecl136II	GAGCTC	1 cut(s)	589
Eco24I	GRGCYC	1 cut(s)	591
Eco53kI	GAGCTC	1 cut(s)	589
EcoICRI	GAGCTC	1 cut(s)	589
EcoRII	CCWGG	1 cut(s)	152
EcoT38I	GRGCYC	1 cut(s)	591
FaeI	CATG	1 cut(s)	298
FaiI	YATR	8 cut(s)	28, 30, 42, 58, 296, 373, 450, 662
FaqI	GGGAC	1 cut(s)	650
FatI	CATG	1 cut(s)	294
Fnu4HI	GCNGC	1 cut(s)	777
FokI	GGATG	1 cut(s)	179
FriOI	GRGCYC	1 cut(s)	591
Fsp4HI	GCNGC	1 cut(s)	777
FspBI	CTAG	5 cut(s)	86, 116, 149, 780, 789
GlaI	GCGC	3 cut(s)	5, 90, 648
GluI	GCNGC	1 cut(s)	777
GsaI	CCCAGC	1 cut(s)	83
HgaI	GACGC	1 cut(s)	704
HhaI	GCGC	3 cut(s)	6, 91, 649
Hin1II	CATG	1 cut(s)	298
Hin6I	GCGC	3 cut(s)	4, 89, 647
HinP1I	GCGC	3 cut(s)	4, 89, 647
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	2 cut(s)	575, 596
Hpy166II	GTNNAC	1 cut(s)	705
Hpy188III	TCNNGA	2 cut(s)	184, 757
Hpy8I	GTNNAC	1 cut(s)	705
Hpy99I	CGWCG	2 cut(s)	587, 698
HpyAV	CCTTC	2 cut(s)	508, 721
HpyCH4III	ACNGT	2 cut(s)	307, 823
HpyCH4IV	ACGT	3 cut(s)	345, 639, 701
HpyCH4V	TGCA	4 cut(s)	298, 360, 643, 705
HpyF10VI	GCNNNNNNNGC	1 cut(s)	785
HpyF3I	CTNAG	2 cut(s)	510, 559
HpySE526I	ACGT	3 cut(s)	345, 639, 701
Hsp92II	CATG	1 cut(s)	298
HspAI	GCGC	3 cut(s)	4, 89, 647
LpnPI	CCDG	6 cut(s)	65, 139, 166, 370, 504, 845
Lsp1109I	GCAGC	1 cut(s)	763
LweI	GCATC	1 cut(s)	201
MaeI	CTAG	5 cut(s)	86, 116, 149, 780, 789
MaeII	ACGT	3 cut(s)	345, 639, 701
MaeIII	GTNAC	3 cut(s)	460, 625, 769
MboII	GAAGA	3 cut(s)	312, 480, 625
MhlI	GDGCHC	3 cut(s)	252, 591, 707
MmeI	TCCRAC	1 cut(s)	450
MseI	TTAA	8 cut(s)	72, 140, 570, 744, 797, 852, 867, 896
MslI	CAYNNNNRTG	1 cut(s)	293
MspR9I	CCNGG	1 cut(s)	154
MvaI	CCWGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	1 cut(s)	785
NheI	GCTAGC	3 cut(s)	115, 148, 788
NlaIII	CATG	1 cut(s)	298
NmuCI	GTSAC	3 cut(s)	460, 625, 769
NspI	RCATGY	1 cut(s)	298
NspV	TTCGAA	1 cut(s)	476
PfeI	GAWTC	2 cut(s)	575, 596
Pfl23II	CGTACG	1 cut(s)	405
PkrI	GCNGC	1 cut(s)	778
Ppu21I	YACGTR	1 cut(s)	702
PshAI	GACNNNNGTC	1 cut(s)	671
Psp124BI	GAGCTC	1 cut(s)	591
Psp6I	CCWGG	1 cut(s)	152
PspFI	CCCAGC	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	152
PspLI	CGTACG	1 cut(s)	405
RsaI	GTAC	3 cut(s)	407, 881, 923
RsaNI	GTAC	3 cut(s)	406, 880, 922
RseI	CAYNNNNRTG	1 cut(s)	293
SacI	GAGCTC	1 cut(s)	591
SaqAI	TTAA	8 cut(s)	72, 140, 570, 744, 797, 852, 867, 896
SatI	GCNGC	1 cut(s)	777
ScrFI	CCNGG	1 cut(s)	154
SduI	GDGCHC	3 cut(s)	252, 591, 707
SfaNI	GCATC	1 cut(s)	201
SfuI	TTCGAA	1 cut(s)	476
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SsiI	CCGC	2 cut(s)	354, 750
SspI	AATATT	1 cut(s)	568
SspMI	CTAG	5 cut(s)	86, 116, 149, 780, 789
SstI	GAGCTC	1 cut(s)	591
StyD4I	CCNGG	1 cut(s)	152
TaaI	ACNGT	2 cut(s)	307, 823
TaiI	ACGT	3 cut(s)	348, 642, 704
TaqI	TCGA	4 cut(s)	433, 476, 582, 818
TatI	WGTACW	2 cut(s)	879, 921
TfiI	GAWTC	2 cut(s)	575, 596
Tru1I	TTAA	8 cut(s)	72, 140, 570, 744, 797, 852, 867, 896
Tru9I	TTAA	8 cut(s)	72, 140, 570, 744, 797, 852, 867, 896
TscAI	CASTG	2 cut(s)	682, 712
TseFI	GTSAC	3 cut(s)	460, 625, 769
TseI	GCWGC	1 cut(s)	776
Tsp45I	GTSAC	3 cut(s)	460, 625, 769
TspDTI	ATGAA	4 cut(s)	150, 588, 626, 726
TspGWI	ACGGA	2 cut(s)	481, 548
TspRI	CASTG	2 cut(s)	682, 712
VneI	GTGCAC	1 cut(s)	703
XapI	RAATTY	7 cut(s)	101, 254, 276, 616, 713, 898, 937
XceI	RCATGY	1 cut(s)	298
XspI	CTAG	5 cut(s)	86, 116, 149, 780, 789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.