pycom07g23860

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0006418
Physical Location & Seq
Forward (+)
24643554 .. 24644488
935 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 726 bp
ATGTTTCCTAATTCATATCATCATGATCAAAGCAAAGATTTGGTATTCCAGACTTCCTTTATTGATGATTCCCACCATAATGATATGATGCAAGTAGAAGATCTAATGCGGGGTCATGAGGTTTTTCCAGAGGAGAAGAATCCATCCCGTAATAAGATAATGGGAAAAGGCAAGCAGCGGCAACAACATATGATATTATCACCTAATTCCAGTAATACTGGAGAAAATAATAGTGATGGTAAGACTGAAAGGAAGATCGTGCGTAGGGACAACGAACGCCAAAGAAGACAGCTTATGGCAGTTCTTAATTCATCACTTCGATCCCTCCTCCCCTGTGAATTGATCAAGGGAAAACGTTCAATCACCGAGCACATGAATGAGGCCGTCAATTATATAAATCACACGAAGGCGAAGATTGAAGAACTGAATGCCAAGAGGGAAAAGATTAAAAAGTTGTATGAATGTGATTCTAAAGATTTTGGTCTCGAAAATGAAAGTTCGGGTCACGATTTTCTTAAGTGCTCTATCATGGTTCACCCAACCTGTTTGGGGGCAGTGGAGGTTGTGATAAGTAGTAGCTGCAGCGAGCAGGAAGGGTTGCCTCTTTCGGGAGTGCTCAAAGTATTGCTTGCGGAAGGCCTTAGTGTTGTTGAGTGTGCTTCCACCAGAGTAAATGAAAGTTCGTTTCACAACATTCAGTGTGAGGTGCATACTCGTTCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

242

Amino Acids

27.41

Weight (kDa)

6.64

Isoelectric Point (pI)

56.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 84 - 134 6.9e-06 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 109, 178, 632
AclI AACGTT 1 cut(s) 355
AclWI GGATC 1 cut(s) 315
AfiI CCNNNNNNNGG 2 cut(s) 549, 608
AflII CTTAAG 1 cut(s) 515
AgsI TTSAA 2 cut(s) 360, 419
AluBI AGCT 2 cut(s) 292, 579
AluI AGCT 2 cut(s) 292, 579
Alw21I GWGCWC 3 cut(s) 372, 524, 618
Alw26I GTCTC 1 cut(s) 488
AlwI GGATC 1 cut(s) 315
AoxI GGCC 2 cut(s) 381, 637
ApeKI GCWGC 3 cut(s) 175, 579, 582
Asp700I GAANNNNTTC 1 cut(s) 355
AsuHPI GGTGA 3 cut(s) 192, 355, 527
BbsI GAAGAC 1 cut(s) 292
Bbv12I GWGCWC 3 cut(s) 372, 524, 618
BbvI GCAGC 3 cut(s) 187, 566, 594
BccI CCATC 2 cut(s) 151, 230
BceAI ACGGC 1 cut(s) 368
BclI TGATCA 2 cut(s) 25, 342
BcoDI GTCTC 1 cut(s) 488
BfmI CTRYAG 1 cut(s) 580
BfrI CTTAAG 1 cut(s) 515
BglII AGATCT 1 cut(s) 100
BisI GCNGC 4 cut(s) 176, 179, 580, 583
BlsI GCNGC 4 cut(s) 177, 180, 581, 584
BmsI GCATC 1 cut(s) 78
BpiI GAAGAC 1 cut(s) 292
BpmI CTGGAG 1 cut(s) 240
BsaI GGTCTC 1 cut(s) 488
Bsc4I CCNNNNNNNGG 2 cut(s) 549, 608
Bse1I ACTGG 2 cut(s) 210, 223
BseGI GGATG 1 cut(s) 143
BseLI CCNNNNNNNGG 2 cut(s) 549, 608
BseNI ACTGG 2 cut(s) 210, 223
BseRI GAGGAG 2 cut(s) 146, 317
BseXI GCAGC 3 cut(s) 187, 566, 594
BshFI GGCC 2 cut(s) 383, 639
BsiHKAI GWGCWC 3 cut(s) 372, 524, 618
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 2 cut(s) 549, 608
BsmAI GTCTC 1 cut(s) 488
BsmFI GGGAC 1 cut(s) 281
BsmI GAATGC 1 cut(s) 433
BsnI GGCC 2 cut(s) 383, 639
Bso31I GGTCTC 1 cut(s) 488
Bsp1286I GDGCHC 3 cut(s) 372, 524, 618
Bsp143I GATC 5 cut(s) 25, 100, 255, 320, 342
BspACI CCGC 3 cut(s) 109, 178, 632
BspANI GGCC 2 cut(s) 383, 639
BspHI TCATGA 2 cut(s) 22, 115
BspMAI CTGCAG 1 cut(s) 584
BspPI GGATC 1 cut(s) 315
BspTI CTTAAG 1 cut(s) 515
BspTNI GGTCTC 1 cut(s) 488
BsrI ACTGG 2 cut(s) 210, 223
BssMI GATC 5 cut(s) 25, 100, 255, 320, 342
BstAFI CTTAAG 1 cut(s) 515
BstC8I GCNNGC 3 cut(s) 173, 587, 630
BstDEI CTNAG 1 cut(s) 641
BstF5I GGATG 1 cut(s) 143
BstKTI GATC 5 cut(s) 28, 103, 258, 323, 345
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 5 cut(s) 25, 100, 255, 320, 342
BstSFI CTRYAG 1 cut(s) 580
BstV1I GCAGC 3 cut(s) 187, 566, 594
BstV2I GAAGAC 1 cut(s) 292
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BsuRI GGCC 2 cut(s) 383, 639
BtsCI GGATG 1 cut(s) 143
BtsI GCAGTG 1 cut(s) 561
BtsIMutI CAGTG 2 cut(s) 561, 704
Cac8I GCNNGC 3 cut(s) 173, 587, 630
CciI TCATGA 2 cut(s) 22, 115
CviAII CATG 4 cut(s) 23, 116, 373, 529
CviJI RGCY 4 cut(s) 292, 383, 579, 639
CviKI_1 RGCY 4 cut(s) 292, 383, 579, 639
DdeI CTNAG 1 cut(s) 641
DpnI GATC 5 cut(s) 27, 102, 257, 322, 344
DpnII GATC 5 cut(s) 25, 100, 255, 320, 342
Eco147I AGGCCT 1 cut(s) 639
Eco31I GGTCTC 1 cut(s) 488
FaeI CATG 4 cut(s) 26, 119, 376, 532
FalI AAGNNNNNCTT 2 cut(s) 612, 644
FaqI GGGAC 1 cut(s) 281
FatI CATG 4 cut(s) 22, 115, 372, 528
FauI CCCGC 1 cut(s) 102
FauNDI CATATG 1 cut(s) 189
FbaI TGATCA 2 cut(s) 25, 342
Fnu4HI GCNGC 4 cut(s) 176, 179, 580, 583
FokI GGATG 1 cut(s) 130
Fsp4HI GCNGC 4 cut(s) 176, 179, 580, 583
GluI GCNGC 4 cut(s) 176, 179, 580, 583
GsuI CTGGAG 1 cut(s) 240
HaeIII GGCC 2 cut(s) 383, 639
Hin1II CATG 4 cut(s) 26, 119, 376, 532
HinfI GANTC 3 cut(s) 68, 139, 467
HphI GGTGA 3 cut(s) 192, 355, 527
Hpy166II GTNNAC 1 cut(s) 535
Hpy188III TCNNGA 7 cut(s) 23, 49, 116, 128, 485, 506, 609
Hpy8I GTNNAC 1 cut(s) 535
HpyAV CCTTC 3 cut(s) 400, 587, 629
HpyCH4IV ACGT 1 cut(s) 355
HpyCH4V TGCA 3 cut(s) 91, 582, 709
HpyF3I CTNAG 1 cut(s) 641
HpySE526I ACGT 1 cut(s) 355
Hsp92II CATG 4 cut(s) 26, 119, 376, 532
Ksp22I TGATCA 2 cut(s) 25, 342
Kzo9I GATC 5 cut(s) 25, 100, 255, 320, 342
LpnPI CCDG 8 cut(s) 62, 141, 204, 223, 346, 556, 575, 679
Lsp1109I GCAGC 3 cut(s) 187, 566, 594
LweI GCATC 1 cut(s) 78
MaeII ACGT 1 cut(s) 355
MaeIII GTNAC 1 cut(s) 503
MalI GATC 5 cut(s) 27, 102, 257, 322, 344
MboI GATC 5 cut(s) 25, 100, 255, 320, 342
MboII GAAGA 6 cut(s) 110, 148, 265, 297, 424, 431
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 3 cut(s) 372, 524, 618
MluCI AATT 5 cut(s) 10, 205, 307, 338, 388
MnlI CCTC 9 cut(s) 112, 124, 335, 338, 373, 429, 553, 612, 697
MroXI GAANNNNTTC 1 cut(s) 355
MseI TTAA 3 cut(s) 306, 447, 516
MslI CAYNNNNRTG 2 cut(s) 78, 375
MspA1I CMGCKG 1 cut(s) 178
MspCI CTTAAG 1 cut(s) 515
Mva1269I GAATGC 1 cut(s) 433
NdeI CATATG 1 cut(s) 189
NdeII GATC 5 cut(s) 25, 100, 255, 320, 342
NlaIII CATG 4 cut(s) 26, 119, 376, 532
NmuCI GTSAC 1 cut(s) 503
PagI TCATGA 2 cut(s) 22, 115
PceI AGGCCT 1 cut(s) 639
PctI GAATGC 1 cut(s) 433
PdmI GAANNNNTTC 1 cut(s) 355
PfeI GAWTC 3 cut(s) 68, 139, 467
PkrI GCNGC 4 cut(s) 177, 180, 581, 584
Psp1406I AACGTT 1 cut(s) 355
PstI CTGCAG 1 cut(s) 584
PsuI RGATCY 1 cut(s) 100
RseI CAYNNNNRTG 2 cut(s) 78, 375
SaqAI TTAA 3 cut(s) 306, 447, 516
SatI GCNGC 4 cut(s) 176, 179, 580, 583
Sau3AI GATC 5 cut(s) 25, 100, 255, 320, 342
SduI GDGCHC 3 cut(s) 372, 524, 618
SetI ASST 8 cut(s) 123, 205, 294, 358, 545, 564, 581, 708
SfaNI GCATC 1 cut(s) 78
SfcI CTRYAG 1 cut(s) 580
SmiMI CAYNNNNRTG 2 cut(s) 78, 375
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
Sse9I AATT 5 cut(s) 10, 205, 307, 338, 388
SseBI AGGCCT 1 cut(s) 639
SsiI CCGC 3 cut(s) 109, 178, 632
StuI AGGCCT 1 cut(s) 639
TaiI ACGT 1 cut(s) 358
TaqI TCGA 2 cut(s) 319, 486
TasI AATT 5 cut(s) 10, 205, 307, 338, 388
TauI GCSGC 1 cut(s) 181
TfiI GAWTC 3 cut(s) 68, 139, 467
Tru1I TTAA 3 cut(s) 306, 447, 516
Tru9I TTAA 3 cut(s) 306, 447, 516
TscAI CASTG 2 cut(s) 561, 704
TseFI GTSAC 1 cut(s) 503
TseI GCWGC 3 cut(s) 175, 579, 582
Tsp45I GTSAC 1 cut(s) 503
TspDTI ATGAA 5 cut(s) 300, 389, 474, 507, 690
TspRI CASTG 2 cut(s) 561, 704
Vha464I CTTAAG 1 cut(s) 515
XmnI GAANNNNTTC 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.