Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002116

Physical Location & Seq

Genomic Coordinates Forward (+)

18453787 .. 18455686

Gene Structure 1900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCAGGGAAGTTTCAGAAGACTAGCATGTACATCGATCAGAACCCTGCAATAATCGAAAACGGTGACTTTCGAAAGAACGTGGACGACGATGGCCGTCCCAAAAGAACTGGGACATGGATGACTGCTAGTGCACATATCATAACGGCTGTGATAGGGTCAGGGGTGTTGTCTCTGGCATGGGCAATAGCTCAGTTAGGATGGGTTGCAGGGCCTGCTGTTCTCATGGCCTTCTCTTTCATCACCTACTTCACCGCCTCTCTGCTCGCCGACTGTTACAGGTCTCCCGACCCTGTCAGCGGCAAAAGAAACTACACCTACATGGACGTCGTACGAGCCAATCTAGGAGGCAGAAAAGTGCAGCTGTGTGGATTGGCTCAGTATTCAAATCTGGTCGGTGTTACCATCGGTTACACAATCACTGCATCCATCAGCATGGGCGGTGAAGAGGTCGAATTGTTTTCACAAGCATGGCCATCATGTGAAGTGTCACACATCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001504 GO:0001505 GO:0003333 GO:0003674 GO:0005215 GO:0005310 GO:0005313 GO:0005326 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015171 GO:0015172 GO:0015175 GO:0015179 GO:0015180 GO:0015186 GO:0015193 GO:0015194 GO:0015238 GO:0015318 GO:0015711 GO:0015740 GO:0015800 GO:0015801 GO:0015804 GO:0015807 GO:0015808 GO:0015810 GO:0015813 GO:0015824 GO:0015825 GO:0015827 GO:0015849 GO:0015893 GO:0016020 GO:0022857 GO:0022858 GO:0022889 GO:0032328 GO:0032329 GO:0034220 GO:0035524 GO:0042221 GO:0042493 GO:0043090 GO:0043207 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051938 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

168

Amino Acids

18.1

Weight (kDa)

7.69

Isoelectric Point (pI)

33.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	36 - 147	7.4e-38	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23810 AT5G23810 AT5G23810 AT5G23810 AT5G23810
fragaria_vesca	FvH4_3g41850 FvH4_3g41850 FvH4_3g41850
malus_domestica	MD03G1040400.v1.1 MD11G1041800.v1.1
prunus_persica	Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1 Prupe.6G032700_v2.0.a1
pyrus_communis	pycom03g03110 pycom03g03120 pycom08g18190 pycom11g03550 pycom11g03570 pycom11g03580
rosa_chinensis	RchiOBHm_Chr5g0075041 RchiOBHm_Chr5g0075051
rosa_laevigata	RLG00000036520 RLG00000036521
rosa_multiflora	Rmu_co8358743.1_g000001 Rmu_sc0006984.1_g000004 Rmu_sc0006984.1_g000012
rosa_roxburghii	Rroxscaffold_1G00006590 Rroxscaffold_1G00006610
rosa_rugosa	Rorug05G0435700
rosa_samantha	Rh5AG493000 Rh5AG493100 Rh5BG514300 Rh5BG514600 Rh5CG537900 Rh5CG538200 Rh5DG526600 Rh5DG526700 Rh5DG526900
rosa_wichuraiana	Rw5G045700 Rw5G045730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	330
AciI	CCGC	3 cut(s)	255, 300, 441
AcoI	YGGCCR	2 cut(s)	94, 473
AcyI	GRCGYC	1 cut(s)	327
AfaI	GTAC	2 cut(s)	32, 333
AfiI	CCNNNNNNNGG	1 cut(s)	299
AgsI	TTSAA	1 cut(s)	387
AluBI	AGCT	2 cut(s)	191, 364
AluI	AGCT	2 cut(s)	191, 364
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	2 cut(s)	177, 288
Alw44I	GTGCAC	1 cut(s)	132
AlwNI	CAGNNNCTG	1 cut(s)	215
AoxI	GGCC	4 cut(s)	94, 212, 228, 473
ApaLI	GTGCAC	1 cut(s)	132
ApeKI	GCWGC	1 cut(s)	361
AspS9I	GGNCC	1 cut(s)	212
AsuHPI	GGTGA	4 cut(s)	77, 235, 244, 455
AsuII	TTCGAA	1 cut(s)	73
BaeGI	GKGCMC	1 cut(s)	136
BalI	TGGCCA	1 cut(s)	475
BbsI	GAAGAC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	5 cut(s)	86, 195, 413, 437, 484
BceAI	ACGGC	2 cut(s)	81, 162
BcgI	CGANNNNNNTGC	2 cut(s)	16, 50
BcoDI	GTCTC	2 cut(s)	177, 288
BfaI	CTAG	3 cut(s)	24, 129, 344
BisI	GCNGC	2 cut(s)	301, 362
BlsI	GCNGC	2 cut(s)	302, 363
BmgT120I	GGNCC	1 cut(s)	212
BmrI	ACTGGG	1 cut(s)	120
BmsI	GCATC	1 cut(s)	434
BmuI	ACTGGG	1 cut(s)	120
BpiI	GAAGAC	1 cut(s)	26
Bpu14I	TTCGAA	1 cut(s)	73
Bsa29I	ATCGAT	1 cut(s)	36
BsaHI	GRCGYC	1 cut(s)	327
BsaI	GGTCTC	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
Bse1I	ACTGG	1 cut(s)	115
BseCI	ATCGAT	1 cut(s)	36
BseGI	GGATG	3 cut(s)	126, 206, 425
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseMII	CTCAG	2 cut(s)	206, 392
BseNI	ACTGG	1 cut(s)	115
BseSI	GKGCMC	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	373
BsgI	GTGCAG	1 cut(s)	380
BshFI	GGCC	4 cut(s)	96, 214, 230, 475
BshVI	ATCGAT	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	136
BsiWI	CGTACG	1 cut(s)	331
BslFI	GGGAC	2 cut(s)	84, 127
BslI	CCNNNNNNNGG	1 cut(s)	299
BsmAI	GTCTC	2 cut(s)	177, 288
BsmFI	GGGAC	2 cut(s)	84, 127
BsnI	GGCC	4 cut(s)	96, 214, 230, 475
Bso31I	GGTCTC	1 cut(s)	288
Bsp119I	TTCGAA	1 cut(s)	73
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp1407I	TGTACA	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	37
BspACI	CCGC	3 cut(s)	255, 300, 441
BspANI	GGCC	4 cut(s)	96, 214, 230, 475
BspCNI	CTCAG	2 cut(s)	205, 391
BspDI	ATCGAT	1 cut(s)	36
BspT104I	TTCGAA	1 cut(s)	73
BspTNI	GGTCTC	1 cut(s)	288
BsrGI	TGTACA	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	115
BssMI	GATC	1 cut(s)	37
BssNI	GRCGYC	1 cut(s)	327
Bst4CI	ACNGT	2 cut(s)	65, 275
Bst6I	CTCTTC	1 cut(s)	441
BstACI	GRCGYC	1 cut(s)	327
BstAPI	GCANNNNNTGC	1 cut(s)	215
BstAUI	TGTACA	1 cut(s)	30
BstBI	TTCGAA	1 cut(s)	73
BstC8I	GCNNGC	2 cut(s)	216, 267
BstDEI	CTNAG	2 cut(s)	192, 378
BstF5I	GGATG	3 cut(s)	126, 206, 425
BstKTI	GATC	1 cut(s)	40
BstMAI	GTCTC	2 cut(s)	177, 288
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	31
BstSLI	GKGCMC	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	373
BstV2I	GAAGAC	1 cut(s)	26
BstXI	CCANNNNNNTGG	1 cut(s)	436
Bsu15I	ATCGAT	1 cut(s)	36
BsuRI	GGCC	4 cut(s)	96, 214, 230, 475
BsuTUI	ATCGAT	1 cut(s)	36
BtsCI	GGATG	3 cut(s)	126, 206, 425
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	1 cut(s)	420
Cac8I	GCNNGC	2 cut(s)	216, 267
CaiI	CAGNNNCTG	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	212
ClaI	ATCGAT	1 cut(s)	36
Csp6I	GTAC	2 cut(s)	31, 332
CviAII	CATG	8 cut(s)	28, 117, 180, 226, 322, 436, 471, 480
CviJI	RGCY	9 cut(s)	96, 149, 191, 214, 230, 338, 364, 377, 475
CviKI_1	RGCY	9 cut(s)	96, 149, 191, 214, 230, 338, 364, 377, 475
CviQI	GTAC	2 cut(s)	31, 332
DdeI	CTNAG	2 cut(s)	192, 378
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
EaeI	YGGCCR	2 cut(s)	94, 473
Eam1104I	CTCTTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	441
Eco31I	GGTCTC	1 cut(s)	288
EcoO109I	RGGNCCY	1 cut(s)	212
FaeI	CATG	8 cut(s)	31, 120, 183, 229, 325, 439, 474, 483
FaqI	GGGAC	2 cut(s)	84, 127
FatI	CATG	8 cut(s)	27, 116, 179, 225, 321, 435, 470, 479
Fnu4HI	GCNGC	2 cut(s)	301, 362
FokI	GGATG	3 cut(s)	133, 213, 412
Fsp4HI	GCNGC	2 cut(s)	301, 362
FspBI	CTAG	3 cut(s)	24, 129, 344
GluI	GCNGC	2 cut(s)	301, 362
HaeIII	GGCC	4 cut(s)	96, 214, 230, 475
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	8 cut(s)	31, 120, 183, 229, 325, 439, 474, 483
HphI	GGTGA	4 cut(s)	77, 235, 244, 455
Hpy166II	GTNNAC	2 cut(s)	85, 134
Hpy188I	TCNGA	2 cut(s)	18, 42
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	2 cut(s)	85, 134
Hpy99I	CGWCG	2 cut(s)	92, 332
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	2 cut(s)	65, 275
HpyCH4IV	ACGT	2 cut(s)	81, 327
HpyCH4V	TGCA	5 cut(s)	50, 134, 209, 361, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	2 cut(s)	192, 378
HpySE526I	ACGT	2 cut(s)	81, 327
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	8 cut(s)	31, 120, 183, 229, 325, 439, 474, 483
Kzo9I	GATC	1 cut(s)	37
LpnPI	CCDG	9 cut(s)	60, 96, 147, 161, 195, 228, 265, 306, 377
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	1 cut(s)	434
MaeI	CTAG	3 cut(s)	24, 129, 344
MaeII	ACGT	2 cut(s)	81, 327
MaeIII	GTNAC	5 cut(s)	65, 275, 400, 410, 489
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	2 cut(s)	31, 458
MhlI	GDGCHC	1 cut(s)	136
MlsI	TGGCCA	1 cut(s)	475
MluCI	AATT	1 cut(s)	455
MluNI	TGGCCA	1 cut(s)	475
MnlI	CCTC	3 cut(s)	268, 341, 442
Mox20I	TGGCCA	1 cut(s)	475
MscI	TGGCCA	1 cut(s)	475
MslI	CAYNNNNRTG	3 cut(s)	320, 434, 469
Msp20I	TGGCCA	1 cut(s)	475
MspA1I	CMGCKG	2 cut(s)	300, 364
MwoI	GCNNNNNNNGC	1 cut(s)	215
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	8 cut(s)	31, 120, 183, 229, 325, 439, 474, 483
NmuCI	GTSAC	2 cut(s)	65, 489
NspI	RCATGY	1 cut(s)	31
NspV	TTCGAA	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
Pfl23II	CGTACG	1 cut(s)	331
PflFI	GACNNNGTC	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	302, 363
PspLI	CGTACG	1 cut(s)	331
PspPI	GGNCC	1 cut(s)	212
PstNI	CAGNNNCTG	1 cut(s)	215
PsyI	GACNNNGTC	1 cut(s)	293
PvuII	CAGCTG	1 cut(s)	364
RsaI	GTAC	2 cut(s)	32, 333
RsaNI	GTAC	2 cut(s)	31, 332
RseI	CAYNNNNRTG	3 cut(s)	320, 434, 469
SatI	GCNGC	2 cut(s)	301, 362
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	8 cut(s)	84, 193, 248, 284, 320, 330, 366, 453
SfaNI	GCATC	1 cut(s)	434
SfuI	TTCGAA	1 cut(s)	73
SmiMI	CAYNNNNRTG	3 cut(s)	320, 434, 469
Sse9I	AATT	1 cut(s)	455
SsiI	CCGC	3 cut(s)	255, 300, 441
SspMI	CTAG	3 cut(s)	24, 129, 344
TaaI	ACNGT	2 cut(s)	65, 275
TaiI	ACGT	2 cut(s)	84, 330
TaqI	TCGA	4 cut(s)	36, 57, 73, 453
TasI	AATT	1 cut(s)	455
TatI	WGTACW	1 cut(s)	30
TauI	GCSGC	1 cut(s)	303
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	2 cut(s)	65, 489
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	2 cut(s)	65, 489
TspDTI	ATGAA	1 cut(s)	229
TspRI	CASTG	1 cut(s)	427
Tth111I	GACNNNGTC	1 cut(s)	293
VneI	GTGCAC	1 cut(s)	132
XceI	RCATGY	1 cut(s)	31
XspI	CTAG	3 cut(s)	24, 129, 344
ZraI	GACGTC	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.