Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003069

Physical Location & Seq

Genomic Coordinates Forward (+)

18708955 .. 18709942

Gene Structure 988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g18570.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAGCCTTGCCCGCCAAGGGAACTATTCAAGTTTGGGTCACCGGGTGTATGTGTCGGCAATTGACGTGAACGATGTTCCTCTGAATAAATATCTGCATGGAGTAACTTGTGAACAAAATATAATTTCTCTCCAGCATGCAGGGGCTAAGTGTGTGAATCGAGCTGATTTGAGAAATGGCCATTCTCAAGGTCTTATTCCGGATTCCTTTTCATTAATGCATGGTCGTGATGCTGAGAATGGCTACTCTGCTAGAGTTGCGGTTGATAAGAGTGATATGGTTCAGGGTCCTCTGCCACGCACATGTAGAGAGGAACTGAAAGCAGACGGTCTGGTTCTAGACAAGGGATTTTCAAATGAGAATTCTGGTTTAAGACCCCAAATAGATTTATATAGATGTTTAACTGAAGAAGAAACTGAAACGACTGCCGCTTCTCCAATTATGAGGACGGAAACTGTGATCGATTTGGAGGCACCGGTAGTAGTTGAAACAGATATTTTTGAGGAAGATTCCATTGAAAGAAGAGGTAAGGACTCACCTCATGAGGGCCTTATCAGAGTAGCAGCTGAGGCTCTAGTTGCCATCTCATCGTCTCAAACTCCCAATATGCAGGACAATGCCACTGGTCACAAGATGGATTCTTCGCAAAACGACTCCCTTCTTTGGTTTGCAAAAACAATTTCTTCATGTGATGGAAATCTTGACAATGGAAGTGCGGCAGAGGTTAAGCGAACTGACAGTGAAGAGTCATTTCCTGATGTGACGAATTACTTTGAGCACATGACATTAAACTTGGTGGAAACCAAGGAAGAGTGGCCCTGCTATGTGCCTCCAAATTCAGACAACCTAATAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF863

Protein Analysis

286

Amino Acids

31.43

Weight (kDa)

4.66

Isoelectric Point (pI)

50.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003069)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47740 FvH4_6g47740 FvH4_6g47740 FvH4_6g47740
malus_domestica	MD09G1059300.v1.1 MD17G1054900.v1.1
prunus_persica	Prupe.3G261200_v2.0.a1
pyrus_communis	pycom08g18570 pycom111g05020 pycom111g05040 pycom111g05060 pycom17g05270 pycom17g05290
rosa_chinensis	RchiOBHm_Chr2g0166861 RchiOBHm_Chr4g0401141 RchiOBHm_Chr5g0037041 RchiOBHm_Chr7g0237831
rosa_laevigata	RLG00000021662 RLG00000021675
rosa_multiflora	Rmu_sc0005344.1_g000006
rosa_roxburghii	Rroxscaffold_2G00084060 Rroxscaffold_2G00084090 Rroxscaffold_2G00084470 Rroxscaffold_4G00327630
rosa_rugosa	Rorug02G0525900 Rorug02G0526000
rosa_samantha	Rh2AG592900 Rh2BG604100 Rh2BG604300 Rh2CG575000 Rh2CG575200 Rh2DG615600 Rh2DG615800 Rh3DG312900 Rh4DG186200 Rh5DG059300 Rh5DG383900
rosa_wichuraiana	Rw2G049350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	472
AccIII	TCCGGA	1 cut(s)	199
AciI	CCGC	4 cut(s)	13, 260, 429, 716
AcoI	YGGCCR	1 cut(s)	178
AcsI	RAATTY	2 cut(s)	361, 835
AcuI	CTGAAG	1 cut(s)	426
AdeI	CACNNNGTG	1 cut(s)	46
AfiI	CCNNNNNNNGG	3 cut(s)	18, 545, 663
AflIII	ACRYGT	1 cut(s)	302
AgeI	ACCGGT	1 cut(s)	475
AgsI	TTSAA	4 cut(s)	30, 354, 488, 518
AjiI	CACGTC	1 cut(s)	67
AluBI	AGCT	2 cut(s)	164, 566
AluI	AGCT	2 cut(s)	164, 566
Alw21I	GWGCWC	1 cut(s)	780
Alw26I	GTCTC	1 cut(s)	597
Aor13HI	TCCGGA	1 cut(s)	199
AoxI	GGCC	3 cut(s)	178, 547, 815
ApeKI	GCWGC	1 cut(s)	563
ApoI	RAATTY	2 cut(s)	361, 835
AseI	ATTAAT	1 cut(s)	215
AsiGI	ACCGGT	1 cut(s)	475
AspS9I	GGNCC	3 cut(s)	287, 547, 816
AsuC2I	CCSGG	1 cut(s)	44
AsuHPI	GGTGA	2 cut(s)	32, 528
AvaII	GGWCC	1 cut(s)	287
BalI	TGGCCA	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	472
Bbv12I	GWGCWC	1 cut(s)	780
BbvCI	CCTCAGC	1 cut(s)	567
BbvI	GCAGC	1 cut(s)	575
BccI	CCATC	3 cut(s)	590, 628, 686
BcnI	CCSGG	1 cut(s)	44
BcoDI	GTCTC	1 cut(s)	597
BfaI	CTAG	3 cut(s)	252, 338, 575
BisI	GCNGC	3 cut(s)	429, 564, 717
BlsI	GCNGC	3 cut(s)	430, 565, 718
Bme1390I	CCNGG	1 cut(s)	44
Bme18I	GGWCC	1 cut(s)	287
BmgBI	CACGTC	1 cut(s)	67
BmgT120I	GGNCC	3 cut(s)	287, 547, 816
BmiI	GGNNCC	2 cut(s)	288, 474
BmrFI	CCNGG	1 cut(s)	44
BmsI	GCATC	1 cut(s)	220
BpmI	CTGGAG	1 cut(s)	116
Bpu10I	CCTNAGC	1 cut(s)	567
BpuEI	CTTGAG	1 cut(s)	171
BpuMI	CCSGG	1 cut(s)	44
Bsa29I	ATCGAT	1 cut(s)	462
BsaBI	GATNNNNATC	1 cut(s)	696
BsaJI	CCNNGG	2 cut(s)	16, 804
BsaWI	WCCGGW	2 cut(s)	199, 475
Bsc4I	CCNNNNNNNGG	3 cut(s)	18, 545, 663
Bse118I	RCCGGY	1 cut(s)	475
Bse1I	ACTGG	1 cut(s)	628
Bse8I	GATNNNNATC	1 cut(s)	696
BseAI	TCCGGA	1 cut(s)	199
BseCI	ATCGAT	1 cut(s)	462
BseDI	CCNNGG	2 cut(s)	16, 804
BseJI	GATNNNNATC	1 cut(s)	696
BseLI	CCNNNNNNNGG	3 cut(s)	18, 545, 663
BseMII	CTCAG	2 cut(s)	225, 558
BseNI	ACTGG	1 cut(s)	628
BseXI	GCAGC	1 cut(s)	575
BshFI	GGCC	3 cut(s)	180, 549, 817
BshNI	GGYRCC	1 cut(s)	472
BshTI	ACCGGT	1 cut(s)	475
BshVI	ATCGAT	1 cut(s)	462
BsiHKAI	GWGCWC	1 cut(s)	780
BsiSI	CCGG	3 cut(s)	43, 200, 476
BslI	CCNNNNNNNGG	3 cut(s)	18, 545, 663
BsmAI	GTCTC	1 cut(s)	597
BsmBI	CGTCTC	1 cut(s)	597
BsnI	GGCC	3 cut(s)	180, 549, 817
Bsp1286I	GDGCHC	1 cut(s)	780
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	1 cut(s)	459
BspACI	CCGC	4 cut(s)	13, 260, 429, 716
BspANI	GGCC	3 cut(s)	180, 549, 817
BspCNI	CTCAG	2 cut(s)	226, 559
BspDI	ATCGAT	1 cut(s)	462
BspEI	TCCGGA	1 cut(s)	199
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	2 cut(s)	288, 474
BspT107I	GGYRCC	1 cut(s)	472
BsrFI	RCCGGY	1 cut(s)	475
BsrI	ACTGG	1 cut(s)	628
BssAI	RCCGGY	1 cut(s)	475
BssECI	CCNNGG	2 cut(s)	16, 804
BssMI	GATC	1 cut(s)	459
BssT1I	CCWWGG	2 cut(s)	16, 804
Bst4CI	ACNGT	3 cut(s)	329, 457, 740
Bst6I	CTCTTC	3 cut(s)	517, 738, 804
BstC8I	GCNNGC	2 cut(s)	13, 138
BstDEI	CTNAG	3 cut(s)	147, 234, 567
BstEII	GGTNACC	1 cut(s)	38
BstKTI	GATC	1 cut(s)	462
BstMAI	GTCTC	1 cut(s)	597
BstMBI	GATC	1 cut(s)	459
BstMWI	GCNNNNNNNGC	4 cut(s)	12, 257, 569, 578
BstNSI	RCATGY	2 cut(s)	140, 306
BstPI	GGTNACC	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	42
BstV1I	GCAGC	1 cut(s)	575
Bsu15I	ATCGAT	1 cut(s)	462
BsuRI	GGCC	3 cut(s)	180, 549, 817
BsuTUI	ATCGAT	1 cut(s)	462
BtrI	CACGTC	1 cut(s)	67
BtsIMutI	CAGTG	2 cut(s)	621, 745
Cac8I	GCNNGC	2 cut(s)	13, 138
CciI	TCATGA	1 cut(s)	541
Cfr10I	RCCGGY	1 cut(s)	475
Cfr13I	GGNCC	3 cut(s)	287, 547, 816
ClaI	ATCGAT	1 cut(s)	462
CspAI	ACCGGT	1 cut(s)	475
CviAII	CATG	7 cut(s)	98, 137, 221, 303, 542, 687, 781
CviJI	RGCY	9 cut(s)	6, 146, 164, 180, 243, 549, 566, 572, 817
CviKI_1	RGCY	9 cut(s)	6, 146, 164, 180, 243, 549, 566, 572, 817
DdeI	CTNAG	3 cut(s)	147, 234, 567
DpnI	GATC	1 cut(s)	461
DpnII	GATC	1 cut(s)	459
DraIII	CACNNNGTG	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	178
Eam1104I	CTCTTC	3 cut(s)	517, 738, 804
EarI	CTCTTC	3 cut(s)	517, 738, 804
Eco130I	CCWWGG	2 cut(s)	16, 804
Eco47I	GGWCC	1 cut(s)	287
Eco57I	CTGAAG	1 cut(s)	426
Eco91I	GGTNACC	1 cut(s)	38
EcoO109I	RGGNCCY	2 cut(s)	287, 547
EcoO65I	GGTNACC	1 cut(s)	38
EcoRI	GAATTC	1 cut(s)	361
EcoT14I	CCWWGG	2 cut(s)	16, 804
EcoT22I	ATGCAT	1 cut(s)	222
ErhI	CCWWGG	2 cut(s)	16, 804
Esp3I	CGTCTC	1 cut(s)	597
FaeI	CATG	7 cut(s)	101, 140, 224, 306, 545, 690, 784
FatI	CATG	7 cut(s)	97, 136, 220, 302, 541, 686, 780
FauI	CCCGC	1 cut(s)	20
Fnu4HI	GCNGC	3 cut(s)	429, 564, 717
Fsp4HI	GCNGC	3 cut(s)	429, 564, 717
FspBI	CTAG	3 cut(s)	252, 338, 575
GluI	GCNGC	3 cut(s)	429, 564, 717
GsuI	CTGGAG	1 cut(s)	116
HaeIII	GGCC	3 cut(s)	180, 549, 817
HapII	CCGG	3 cut(s)	43, 200, 476
Hin1II	CATG	7 cut(s)	101, 140, 224, 306, 545, 690, 784
HinfI	GANTC	7 cut(s)	157, 203, 509, 533, 638, 653, 746
HpaII	CCGG	3 cut(s)	43, 200, 476
HphI	GGTGA	2 cut(s)	32, 528
Hpy166II	GTNNAC	2 cut(s)	70, 113
Hpy188I	TCNGA	3 cut(s)	84, 557, 841
Hpy188III	TCNNGA	6 cut(s)	200, 227, 338, 542, 701, 755
Hpy8I	GTNNAC	2 cut(s)	70, 113
HpyAV	CCTTC	1 cut(s)	668
HpyCH4III	ACNGT	3 cut(s)	329, 457, 740
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	5 cut(s)	97, 140, 220, 610, 671
HpyF10VI	GCNNNNNNNGC	4 cut(s)	12, 257, 569, 578
HpyF3I	CTNAG	3 cut(s)	147, 234, 567
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	7 cut(s)	101, 140, 224, 306, 545, 690, 784
Kpn2I	TCCGGA	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	459
Lsp1109I	GCAGC	1 cut(s)	575
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	3 cut(s)	252, 338, 575
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	4 cut(s)	38, 103, 626, 760
MalI	GATC	1 cut(s)	461
MboI	GATC	1 cut(s)	459
MboII	GAAGA	8 cut(s)	419, 422, 518, 534, 633, 675, 755, 821
MfeI	CAATTG	1 cut(s)	60
MhlI	GDGCHC	1 cut(s)	780
MlsI	TGGCCA	1 cut(s)	180
MluCI	AATT	7 cut(s)	60, 123, 361, 438, 678, 766, 835
MluNI	TGGCCA	1 cut(s)	180
MlyI	GAGTC	3 cut(s)	527, 647, 755
Mox20I	TGGCCA	1 cut(s)	180
Mph1103I	ATGCAT	1 cut(s)	222
MroI	TCCGGA	1 cut(s)	199
MscI	TGGCCA	1 cut(s)	180
MseI	TTAA	5 cut(s)	215, 371, 401, 726, 788
MslI	CAYNNNNRTG	2 cut(s)	225, 301
Msp20I	TGGCCA	1 cut(s)	180
MspA1I	CMGCKG	1 cut(s)	566
MspI	CCGG	3 cut(s)	43, 200, 476
MspR9I	CCNGG	1 cut(s)	44
MunI	CAATTG	1 cut(s)	60
MwoI	GCNNNNNNNGC	4 cut(s)	12, 257, 569, 578
NciI	CCSGG	1 cut(s)	44
NdeII	GATC	1 cut(s)	459
NlaIII	CATG	7 cut(s)	101, 140, 224, 306, 545, 690, 784
NlaIV	GGNNCC	2 cut(s)	288, 474
NmuCI	GTSAC	3 cut(s)	38, 626, 760
NsiI	ATGCAT	1 cut(s)	222
NspI	RCATGY	2 cut(s)	140, 306
PaeI	GCATGC	1 cut(s)	140
PagI	TCATGA	1 cut(s)	541
PciI	ACATGT	1 cut(s)	302
PfeI	GAWTC	4 cut(s)	157, 203, 509, 638
PinAI	ACCGGT	1 cut(s)	475
PkrI	GCNGC	3 cut(s)	430, 565, 718
PleI	GAGTC	3 cut(s)	527, 647, 754
PpsI	GAGTC	3 cut(s)	527, 647, 754
PpuMI	RGGWCCY	1 cut(s)	287
PscI	ACATGT	1 cut(s)	302
PshBI	ATTAAT	1 cut(s)	215
Psp5II	RGGWCCY	1 cut(s)	287
PspEI	GGTNACC	1 cut(s)	38
PspN4I	GGNNCC	2 cut(s)	288, 474
PspPI	GGNCC	3 cut(s)	287, 547, 816
PspPPI	RGGWCCY	1 cut(s)	287
PvuII	CAGCTG	1 cut(s)	566
RseI	CAYNNNNRTG	2 cut(s)	225, 301
SaqAI	TTAA	5 cut(s)	215, 371, 401, 726, 788
SatI	GCNGC	3 cut(s)	429, 564, 717
Sau3AI	GATC	1 cut(s)	459
Sau96I	GGNCC	3 cut(s)	287, 547, 816
SchI	GAGTC	3 cut(s)	527, 647, 755
ScrFI	CCNGG	1 cut(s)	44
SduI	GDGCHC	1 cut(s)	780
SetI	ASST	8 cut(s)	69, 166, 193, 529, 541, 568, 726, 849
SfaNI	GCATC	1 cut(s)	220
SinI	GGWCC	1 cut(s)	287
SmiMI	CAYNNNNRTG	2 cut(s)	225, 301
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
SphI	GCATGC	1 cut(s)	140
Sse9I	AATT	7 cut(s)	60, 123, 361, 438, 678, 766, 835
SsiI	CCGC	4 cut(s)	13, 260, 429, 716
SspMI	CTAG	3 cut(s)	252, 338, 575
StyD4I	CCNGG	1 cut(s)	42
StyI	CCWWGG	2 cut(s)	16, 804
TaaI	ACNGT	3 cut(s)	329, 457, 740
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	2 cut(s)	160, 462
TasI	AATT	7 cut(s)	60, 123, 361, 438, 678, 766, 835
TauI	GCSGC	2 cut(s)	431, 719
TfiI	GAWTC	4 cut(s)	157, 203, 509, 638
Tru1I	TTAA	5 cut(s)	215, 371, 401, 726, 788
Tru9I	TTAA	5 cut(s)	215, 371, 401, 726, 788
TscAI	CASTG	2 cut(s)	628, 745
TseFI	GTSAC	3 cut(s)	38, 626, 760
TseI	GCWGC	1 cut(s)	563
Tsp45I	GTSAC	3 cut(s)	38, 626, 760
TspDTI	ATGAA	2 cut(s)	201, 675
TspGWI	ACGGA	1 cut(s)	464
TspRI	CASTG	2 cut(s)	628, 745
VpaK11BI	GGWCC	1 cut(s)	287
VspI	ATTAAT	1 cut(s)	215
XapI	RAATTY	2 cut(s)	361, 835
XbaI	TCTAGA	1 cut(s)	337
XceI	RCATGY	2 cut(s)	140, 306
XspI	CTAG	3 cut(s)	252, 338, 575
Zsp2I	ATGCAT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.